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Bayer, Range D.. "Seabirds near an Oregon estuarine salmon hatchery in 1982 and during the 1983 El Nino." Fishery Bulletin 84 (1986): p.279-286.
Oregon Department of Fish and Wildlife. Shellfish and Estuarine Assessment of Coastal Oregon(SEACOR),,. SEACOR Findings – Yaquina Bay [web page]. Oregon Department of Fish and Wildlife, 2014.
Engelhart, Simon E., Matteo Vacchi, Benjamin P. Horton, Alan R. Nelson, and Robert E. Kopp. "A sea-level database for the Pacific coast of central North America." Quaternary Science Reviews 113 (2015): p.78-92.
Crandell, George F.. Seasonal and Spatial Distribution of Harpacticoid Copepods in Relation to Salinity and Temperature in Yaquina Bay, Oregon. Ph. D. ed. Corvallis, Or.: Oregon State University, 1967.
Nickelson, Thomas E., Jeffrey D. Rodgers, Steven L. Johnson, and Mario F. Solazzi. "Seasonal changes in habitat use by juvenile coho salmon (Oncorhynchus kisutch) in Oregon coastal streams." Canadian Journal of Fisheries and Aquatic Sciences 49 (1992): 783-789.
Malouf, Robert E., and Wilbur P. Breese. "Seasonal changes in the effects of temperature and water flow rate on the growth of juvenile Pacific oysters, Crassostreea gigas (Thunberg)." Aquaculture 12 (1977): p.1-13.
Frolander, Herbert F., Charles B. Miller, M. J. Flynn, S. C. Myers, and S. T. Zimmerman. "Seasonal cycles of abundance in zooplankton populations of Yaquina Bay, Oregon." Marine Biology 21 (1973): p.277-288.
Seavy, Donald Keith. Seasonal Gametogenesis and Egg Laying in the Prosobranch Gastropods Nucella lamellosa, Nucella emarginata, Searlesia dira and Amphissa columbiana on the Oregon coast. Ph. D. ed. Corvallis, Or.: Oregon State University, 1977.
Bayer, Range D.. "Seasonal occurances of ten waterbird species at Yaquina estuary, Oregon." The Murrelet 64 (1983): p.78-86.
Kreeger, Daniel A.. "Seasonal patterns in utilization of dietary protein by the mussel, Mytilus trossulus." Marine Ecology Progress Series 95 (1993): 215-232.
Fritz, Cara E.. A Seasonal Study of Sediment Reworking by Neotrypaea californiensis in Yaquina Bay, Oregon. M.S. ed. Corvallis, Or.: Oregon State University, 2002.
Zimmerman, Steven T.. Seasonal Succession of Zooplankton Populations in Two Dissimilar Marine Embayments on the Oregon Coast. Ph. D. ed. Corvallis, Or.: Oregon State University, 1972.
Kreeger, Daniel A., and Christopher J. Langdon. "Seasonal variation in the utilization of dietary protein by the mussel, Mytilus trossulus." Journal of Shellfish Research 11 (1992): 199-200.
Specht, David T.. "Seasonal variation of algal biomass production potential and nutrient limitation in Yaquina Bay, Oregon." In Biostimulation and Nutrient Assessment Symposium, edited by E. J. Middlebrooks, D. H. Falkenborg and T. E. Maloney, p.149-174. Ann Arbor, Mi: Ann Arbor Science, 1970.
Specht, David T.. "Seasonal variation of algal biomass production potential and nutrient limitation in Yaquina Bay, Oregon." In Biostimulation and Nutrient Assessment Symposium. , edited by E. J. Middlebrooks, D. H. Falkenborg and T. E. Maloney, p.149-174. Logan, Utah: Utah State University, 1975.
Specht, David T.. "Seasonal variation of algal biomass production potential and nutrient limitation in Yaquina Bay, Oregon." In Biostimulation and Nutrient Assessment, p.149-174. Ann Arbor, MI: Ann Arbor Science, 1976.
Sigleo, Anne C., and Walter E. Frick. Seasonal variations in nutrient concentrations and river flow in a northwestern USA watershed In First Interagency Conference on Research in the Watersheds, Edited by K. G. McElroy Renard, S. A. Gburek, W. J. Canfield, H. Evan and (eds.) S. L. Russell. Vol. 753. Benson, AZ: U.S. Department of Agriculture, Agricultural Research Service, 2003.
Sigleo, Anne C., and Walter E. Frick. "Seasonal variations in river discharge and nutrient export to a Northeastern Pacific estuary." Estuarine, Coastal and Shelf Science 73 (2007): p.368-378.
Burreson, Eugene M., and Robert E. Olson. "Seasonal variations in the populations of two hemiurid trematodes from the pacific staghorn sculpin Leptocottus armatus Girard, in an Oregon estuary." Journal of Parasitology 60 (1974): p.764-767.
LaTouche, Y.David, and Michael C. Mix. "Seasonal variations of arsenic and other trace elements in bay mussels (Mytilus edulis)." Bulletin of Environmental Contamination and Toxicology 29 (1982): p.665-670.
Anonymous. "The season's hatchery operations." Pacific Fisherman 3, no. 5 (1905): p.16, 25.
Armstrong, David A., Donald Gunderson, and Chris Rooper. "Secondary production in coastal estuaries: Dungess crab and English sole as bioindicators." In Pacific Northwest Coastal Ecosystems Regional Study Annual Report, edited by J. K. Parrish and Kate Litle, p.79-90. PNCERS Annual Report 2001. Coastal Ocean Programs, NOAA, 2001.
Hankin, Shanon L., Christine L. Weilhoefer, James E. Kaldy, and Theodore H. DeWitt. "Sediment diatom species and community response to nitrogen addition in Oregon (USA) estuarine tidal wetlands." Wetlands 32 (2012): p.1023-1031.
Swartz, Richard C., G. R. Ditsworth, D. W. Schults, and Janet O. Lamberson. "Sediment toxicity to a marine infaunal amphipod: cadmium and its interaction with sewage sludge." Marine Environmental Research 18 (1986): 133-153.
Kulm, Laverne D., and John V. Byrne. "Sedimentary response to hydrography in an Oregon estuary." Marine Geology: International Journal of Marine Geology, Geochemistry and Geophysics 4 (1966): p.85-118.

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