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McIntire, David C., and Barry L. Wulff. Ecological-Physiological Investigations of Littoral Diatom Communities of the Yaquina River Estuary, Oregon. National Science Foundation Research Grant GB-7203. Corvallis, Or.: Department of Botany and Plant Pathology, Oregon State University, 1969.
Wainwright, Thomas C., Thomas H. Williams, Kurt L. Fresh, Brian K. Wells, P. S. Levin, B. K. Wells, and M. B. Sheer. "Ecosystem components, protected species – salmon: Chinook and coho salmon." In Integrated Ecosystem Assessment of the California Current. Phase II Report 2012. , p.244-294. U.S. National Oceanographic and Atmospheric Administration. National Marine Fisheries Service,, 2013.
Brown, Cheryl A., Darrin Sharp, and Chris Mochon T. Collura. "Effect of climate change on water temperature and attainment of water temperature criteria in the Yaquina Estuary, Oregon (USA)." Estuarine, Coastal and Shelf Science 169 (2016): p.136-146.
Brophy, Laura S., and Green Point Consulting. Effectiveness Monitoring at Tidal Wetland Restoration and Reference Sites in the Siuslaw River Estuary: a Tidal Swamp Focus. Corvallis, Or.: Green Point Consulting, 2009.
Walker, John D.. Effects of Bark Debris on Benthic Macrofauna of Yaquina Bay, Oregon. M.S. ed. Corvallis, Or.: Oregon State University, 1973.
O'Neal, Gary, Jack Sceva, and U.S. Environmental Protection Agency. Office of Water Programs. Region X. The Effects of Dredging on Water Quality in the Northwest. Seattle, Washington: United States Environmental Protection Agency, 1971.
Bottom, Daniel L., P. J. Howell, J. D. Rogers, and Oregon. Dept. of Fish and Wildlife. The Effects of Stream Alterations on Salmon and Trout Habitat in Oregon. Portland, Or.: Oregon Department of Fish and Wildlife, 1985.
Kjeldsen, Chris K.. Effects of Variations in Salinity and Temperature on Some Estuarine Macro-Algae. Ph. D. ed. Corvallis, Or.: Oregon State University, 1966.
Anonymous. "Electrofishing on coastal rivers part of wild fall Chinook research." Oregon Wildlife 34, no. 11 (1979): p.12-13.
Johnson, Kelsey K.. Empirical Analyses of Forestry Interactions with Climate Uncertainty and Threatened Species. Ph. D. ed. Corvallis, Or.: Oregon State University, 2022.
Schliker, Herbert G., Robert J. Deacon, Gordon W. Olcott, and John D. Beaulieu. Environmental geology of Lincoln County, Oregon In Bulletin (Oregon. Dept. of Geology and Mineral Industries). Vol. no.81. Portland, OR: State of Oregon. Department of Geology and Mineral Industries, 1973.
Kenaston, Ken R.. Estimated run size of winter steelhead in Oregon coastal streams, 1980-85 In Information Reports / Fish Division, Oregon Department of Fish and Wildlife. Vol. no.89-1. Portland, Or.: Oregon Dept. of Fish and Wildlife, Research and Development Section, 1989.
Meengs, Chad C., and Robert T. Lackey. "Estimating the size of historical Oregon salmon runs." Reviews in Fisheries Science 13 (2006): p.51-66.
Cooper, Richard M.. Estimation of Peak Discharges for Rural, Unregulated Streams in Western Oregon In Scientific Investigations Report / U.S. Geological Survey., 2005.
Goodwin, Carl R.. Estuarine Tidal Hydraulics: One Dimensional Model and Predictive Algorithm. Ph. D. ed. Corvallis, Or.: Oregon State University , 1974.
Borgerson, L. A., and Oregon. Dept. of Fish and Wildlife. "Evaluation and Development of Techniques for Salmon and Steelhead Culture: Yaquina River Fish Management Plan." Progress Reports (1989).
Stewart, Richard Lee. An Evaluation of Grain Size, Shape, and Roundness Parameters in Determining Depositional Environment in Pleistocene Sediments from Newport, Oregon. M.S. ed. Eugene, Or.: University of Oregon, 1967.
McCormick, J. L., and M. R. Falcy. "Evaluation of non-traditional modelling techniques for forecasting salmon returns." Fisheries Management and Ecology 22 , no. 4 (2015): p.269-348.
McGie, Alan M., Oregon. Fish Commission, U.S. Fish and Wildlife Service, and United States. Bureau of Commercial Fisheries. "Evaluation of stocking adult coho above barriers." In Research and Management Studies of Oregon Coastal Salmon, p.8-15., 1970.
Schroeder, Kirk. "Evaluation of straying by coastal stocks of hatchery winter steelhead." In Proceedings of the Steelhead Management Workshop, edited by Tom Murtaugh, p.10-12. Portland, Or.: Oregon Dept. of Fish and Wildlife, 1994.
Beidler, W. M., T. E. Nickelson, and Oregon. Dept. of Fish and Wildlife. Fish Division. An evaluation of the Oregon Department of Fish and Wildlife Standard Spawning Fish Suvery System for coho salmon In Information Report Series. Fisheries.. Vol. no. 80-9. [Portland, Or.]: Oregon Department of Fish and Wildlife, 1980.
Scully-Engelmeyer, Kaegan, Elise F. Granek, Max Nielsen-Pincus, Andy Lanier, Steven S. Rumrill, Patrick Moran, Elena Nilsen, Michelle L. Hladik, and Lori Pillsbury. "Exploring biophysical linkages between coastal forestry management practices and aquatic bivalve contaminant exposure." Toxics 9 (2021): article 46, 25 p.

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