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2007
Brown, Cheryl A., and National Health and Environmental Effects Research Laboratory(U.S.). Western Ecology Division.. An Approach to Developing Nutrient Criteria for Pacific Northwest Estuaries : a Case Study of Yaquina Estuary, Oregon. Vol. EPA 600/R-07/046. Washington, DC: U.S. Environmental Protection Agency, Office of Research and Development, 2007.
→ www.biodiversitylibrary.org/bibliography/149777#/summary
Johnson, Lyndal L., Gina M. Ylitalo, Mary R. Arkoosh, Anna N. Kagley, Coral Stafford, Jennie L. Bolton, Jon Buzitis, Bernadita F. Anulacion, and Tracy K. Collier. "Contaminant exposure in outmigrant juvenile salmon from Pacific Northwest estuaries of the United States." Environmental Monitoring and Assessment 124 (2007): p.167-194.
Berry, Richard L., and Ashley A. Rowden. "An examination of the spatial and temporal generality of the influence of ecosystem engineers on the composition of associated assemblages." Aquatic Ecology 41 (2007): p.129-147.
Sin, Yongsik, Anne C. Sigleo, and Eunsook Song. "Nutrient fluxes in the microalgal-dominated intertidal regions of the lower Yaquina estuary, Oregon (USA)." Northwest Science 81, no. 1 (2007): p.50-61.
Hebert, Andrew B., John W. Morse, and Peter M. Eldridge. "Small-scale heterogeneity in the geochemistry of seagrass vegetated and non-vegetated estuarine sediments: causes and consequences." Aquatic Geochemistry 13 (2007): p.19-39.
2006
Schlosser, Susan, and Jennifer Bloeser. The Collaborative Study of Juvenile Rockfish, Cabezon, and Kelp Greenling Habitat Associations between Morro Bay, California and Newport, Oregon: Final report to: Pacific States Marine Fisheries Commission Summarizing Data for 2003, 2004 and 2005., 2006.
→ escholarship.org/uc/item/35m8147x
Holm, C. E., Z. Chase, K. S. Johnson, and H. W. Jannasch. "Development of an autonomous in-situ analyzer for dissolved copper in the marine environment." EOS, Transactions of the American Geophysical Union 87 (2006): np.
Rooper, Christopher N., Donald R. Gunderson, and David A. Armstrong. "Evidence for resource partitioning and competition in nursery estuaries by juvenile flatfish in Oregon and Washington." Fishery Bulletin 104 (2006): p.616-622.
→ spo.nmfs.noaa.gov/sites/default/files/pdf-content/2006/1044/rooper.pdf
Davidson, Timothy Mathias. The Invasion of the Australasian Burrowing Isopod (Sphaeroma quoianum) in Coos Bay, Oregon. M.S. ed. Eugene, Or.: University of Oregon, 2006.
→ scholarsbank.uoregon.edu/xmlui/handle/1794/3774
Petrie, M. E., and C. H. Ryer. "Laboratory and field evidence for structural habitat affinity of young-of-the-year lingcod." Transactions of the American Fisheries Society 135 (2006): p.1622-1630.
Petersen, Christine. "Range expansion in the northeast Pacific by an estuary mud crab -- a molecular study." Biological Invasions 8 (2006): p.565-576.
Courter, Ian I.. Salmon Recovery in the Pacific Northwest: Defining What Constitutes a Wild Salmon. M.S ed. Corvallis, Or.: Oregon State University, 2006.
→ ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/2227ms50f
2005
MdCrae, Jean, and Oregon. Dept. of Fish and Wildlife. Developmental Fisheries. Bay Clam Dive Fishery., 2005.
→ ir.library.oregonstate.edu/concern/technical_reports/sj139262c
Boese, Bruce L., Bradley D. Robbins, and G. B. Thursby. "Dessication is a limiting factor for ellgrass (Zostera marina L.) distribution in the intertidal zone of a northeastern Pacific (USA) estuary." Botanica Marina. 48 (2005): 274-283.
Parametrix, Inc.. Hatfield Marine Science Center Trail Erosion Study: Technical Report. Bellevue, Wa., 2005.
→ ir.library.oregonstate.edu/concern/administrative_report_or_publications/4j03d0096
Sigleo, Anne C., C. W. Mordy, P. Stabeno, and Walter E. Frick. "Nitrate variability along the Oregon coast: Estuarine–coastal exchange." Estuarine, Coastal and Shelf Science 64 (2005): p.211-222.
Meengs, Chad C.. The Size of the Oregon Coastal Salmon Runs in the Mid-1800s . M.S. ed. Corvallis, Or.: Oregon State University, 2005.
→ ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/3r074x21m
Power, James H., Steven L. Johnson, and Derek Wilson. "A telemetry study of downstream coho smolt movement in the Yaquina River and estuary [abstract only]." American Fisheries Society. Oregon Chapter. Meeting & Symposium. Annual meeting & symposium (2005): 80-81.
Giannico, Guillermo R., and Jon A. Souder. Tide gates in the Pacific Northwest: operation, types, and environmental effects In ORESU-T. Vol. no.05-001. Corvallis, Or.: Sea Grant Oregon, Oregon State University , 2005.
→ seagrant.oregonstate.edu/sites/seagrant.oregonstate.edu/files/sgpubs/onlinepubs/t05001.pdf
Sherman, Tim, and U.S. Army. Corps of Engineers. Portland District. Yaquina Bay and South Beach Marine Sediment Quality Evaluation Report. Portland, Or.: U.S. Army Corps of Engineers. Portland District, 2005.
→ ir.library.oregonstate.edu/concern/technical_reports/cf95jb88v
Northwest Area Committees. Yaquina Bay, Oregon Geographic Response Plan (GRP). [Portland, Or.], 2005.
→ www.oregon.gov/deq/FilterDocs/YaquinaBayGeoResponsePlan.pdf
2004
Scranton, Russell W.. The Application of Geographic Information Systems for Delineation and Classification of Tidal Wetlands for Resource Management of Oregon’s Coastal Watersheds. M.S. ed. Corvallis, Or.: Oregon State University, 2004.
→ ir.library.oregonstate.edu/concern/graduate_projects/5999n7779
Giannico, Guillermo R., and Jon A. Souder. The effects of tide gates on estuarine habitats and migratory fish In ORESU-G. Vol. no.04-002. Corvallis, Or.: Sea Grant Oregon, Oregon State University , 2004.
→ seagrant.oregonstate.edu/sites/seagrant.oregonstate.edu/files/sgpubs/onlinepubs/g04002.pdf
Evans III, Sanford. Improving Pacific Oyster (Crassostrea gigas) Production through Selective Breeding. Ph. D. ed. Corvallis, Or.: Oregon State University, 2004.
→ ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/1v53k0335
Query, Charles Floyd. "Yaquina Bay." In Oregon Ferries: a History of the Ferries on Oregon's Major Waterways Since 1826, p.57-58. Santa Cruz, CA?, 2004.

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