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2013
Brophy, Laura S., Deborah A. Reusser, Christopher N. Janousek, Green Point Consulting, U.S. Geological Survey, and U.S.Environmental Protection Agency. Tidal wetlands of the Yaquina and Alsea River estuaries, Oregon: Geographic Information Systems layer development and recommendations for National Wetlands Inventory revisions In Open-File Report (Geological Survey (U.S.)). Vol. no.2012–1038. Reston, Va.: U.S. Geological Survey, 2013.
→ pubs.usgs.gov/of/2012/1038/pdf/ofr2012-1038.pdf
2000
Castillo, Gonzalo C.. Benthic Biological Invasions in Two Temperate Estuaries and Their Effects on Trophic Relations of Native Fish and Community Stability. Ph. D. ed. Corvallis, Or.: Oregon State University, 2000.
→ ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/mc87pt10t
1999
Brophy, Laura, Oregon. Governor's Watershed Enhancement Board, and MidCoast Watersheds Council.. Yaquina and Alsea River Basins Estuarine Wetland Site Prioritization Project: Final Report for MidCoast Watersheds Council. Corvallis, OR: Green Point Consulting,, 1999.
→ ir.library.oregonstate.edu/concern/defaults/5x21tk796
1995
Peterson, Curt D., and George R. Priest. "Preliminary reconnaissance survey of Cascadia paleotsunami deposits in Yaquina Bay, Oregon." Oregon Geology 57 (1995): 33-40.
→ pubs.oregon.gov/dogami/og/OGv57n02.pdf
1994
Darienzo, Mark E., Curt D. Peterson, and Charles Clough. "Stratigraphic evidence for great subduction-zone earthquakes at four estuaries in northern Oregon, USA." Journal of Coastal Research 10 (1994): 850-876.
1989
Oregon. Division of State Lands. Heads of Tide for Coastal Streams in Oregon. Salem, Or.: Oregon. Division of State Lands. Engineering Section, 1989.
→ digital.osl.state.or.us/islandora/object/osl%3A14095
1983
U.S. Geological Survey. Analyses of elutriates, native water, and bottom material in selected rivers and estuaries in western Oregon and Washington In U.S. Geological Survey Open File Report , Edited by Gregory J. Fuhrer and Frank A. Rinella. Vol. no.82-922. Portland, Or., 1983.
→ pubs.usgs.gov/of/1982/0922/report.pdf
1980
Proctor, Charles M., John C. Garcia, David V. Galvin, Gary B. Lewis, Lincoln C. Loehr, Alison M. Massa, and Ryckman Edgerly Tomlinson & Associates Inc. An Ecological Characterization of the Pacific Northwest Coastal Region. Volume 4: Characterization Atlas - Watershed Unit Descriptions In FWS/OBS. Vol. no.79/14. United States Fish and Wildlife Service. Biological Services Program, 1980.
→ babel.hathitrust.org/cgi/pt?id=mdp.39015086411835;view=1up;seq=3
1977
Morgan, John B., and Robert L. Holton. A bibliography of estuarine research in Oregon: a geographic review of research conducted in Oregon's estuaries, their drainage basins and the coastal beaches, dunes and headlands In ORESU-L. Vol. no.77-001. Oregon Estuarine Research Council, 1977.
1968
U.S. Department of the Interior. Fish and Wildlife Service. Bureau of Sport Fisheries and Wildlife. Preliminary Survey of Fish and Wildlife in Relation to the Ecological and Biological Aspects of Yaquina Bay Oregon. Portland, Or., 1968.
→ ir.library.oregonstate.edu/concern/defaults/mw22v631f
1967
Gnose, Charles E.. Ecology of the Striped Seaperch, Embiotoca lateralis, in Yaquina Bay, Oregon. M.S. ed. Corvallis, Or.: Oregon State University, 1967.
→ ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/x346d793w
1939
Dimick, R. E.. The History of the Yaquina Bay Oyster According to Proffessor Dimick OSU., 1939.
→ ir.library.oregonstate.edu/concern/technical_reports/xw42n8388
1931
Fasten, Nathan. "The Yaquina oyster beds of Oregon." The American Naturalist 65 (1931): p.434-468.