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Adamus, Paul R., Jennifer Larsen, and Russell Scranton. Wetland Profiles of Oregon’s Coastal Watersheds and Estuaries: Part 3 of a Hydrogeomorphic Guidebook. Report to Coos Watershed Association, US Environmental Protection Agency, and Oregon Depart. of State Lands, Salem.., 2005.
Adamus, Paul R.. Science Review and Data Analysis for Tidal Wetlands of the Oregon Coast. Part 2 of a Hydrogeomorphic Guidebook. Report to Coos Watershed Association, US Environmental Protection Agency, and Oregon Dept. of State Lands, Salem., 2005.
Adamus, Paul R.. Hydrogeomorphic (HGM) Assessment Guidebook for Tidal Wetlands of the Oregon Coast, Part 1: Rapid Assessment Method. Charleston, Or.: Coos Watershed Association, 2006.
Aldous, Allison, Jenny Brown, Adrien Elseroad, and The Nature Conservancy in Oregon. The Coastal Connection: Assessing Oregon Estuaries for Conservation Planning. Portland, Or.: The Nature Conservancy in Oregon, 2008.
Angel, Tiah, Zasha Bassett, Brian Chipman, Kimberly Cleveland, Tamisha Cronick, Janette Ehlig, Dan Frerich, Chris Hunt, Todd Ison, Angela McGuire et al. The European Green Crab (Carcinus maenas) in Oregon: A Preliminary Survey of Yaquina, Coos, Winchester and Siletz Bays. Corvallis, Or.: Oregon State University, 1997.
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Barton, Michael G.. Influence of Temperature and Salinity on the Adaptation of Anoplarchus purpurescens and Pholis ornata to an Intertidal Habitat. Ph. D. ed. Corvallis, Or.: Oregon State University, 1978.
Bayer, Range D.. "Waterbird records for West and East ponds, South Beach peninsula, Lincoln County." Journal of Oregon Ornithology 1 (1993): p.35-70.
Boehlert, George W., and Bruce C. Mundy. "Recrutiment dynamics of metamorphosing English sole Parophyrs vetulus to Yaquina Bay, Oregon." Estuarine, Coastal and Shelf Science 25 (1987): p.261-281.
Bourke, Robert H.. Monitoring Coastal Upwelling by Measuring its Effects within an Estuary. M.S. ed. Corvallis, Or.: Oregon State University, 1969.
Brooks, Christopher. Is the Laboratory Growth of Pacific Oyster Spat, Crassostrea gigas, Exposed to Varying Salinities, Predictive of Their Growth in the Estuary?. M.S. ed. Corvallis, Or.: Oregon State University, 1999.
Brophy, Laura S., and Michael J. Ewald. Modeling Sea Level Rise Impacts to Oregon's Tidal Wetlands: Maps and Prioritization Tools to Help Plan for Habitat Conservation into the Future. Corvallis, Or.: Institute for Applied Ecology. Estuary Technical Group, 2017.
Brophy, Laura S., Deborah A. Reusser, Christopher N. Janousek, Green Point Consulting, U.S. Geological Survey, and U.S.Environmental Protection Agency. Tidal wetlands of the Yaquina and Alsea River estuaries, Oregon: Geographic Information Systems layer development and recommendations for National Wetlands Inventory revisions In Open-File Report (Geological Survey (U.S.)). Vol. no.2012–1038. Reston, Va.: U.S. Geological Survey, 2013.
Brophy, Laura S., and Michael J. Ewald. Modeling Sea Level Rise Impacts to Oregon’s Tidal Wetlands: Yaquina Bay Estuary [cartographic material]. Corvallis, Or.: >Institute for Applied Ecology, 2017.
Brophy, Laura S., and Michael J. Ewald. Tidal Wetland Landward Migration Zones (LMZs) for 4.7 Ft Sea Level Rise for the Yaquina Bay Estuary [cartographic material]. Corvallis, Or.: Institute for Applied Ecology, 2017.
Brophy, Laura S., and Michael J. Ewald. Yaquina Bay Estuary Current vs. 4.7ft SLR Map [cartographic material]. Corvallis, Or.: Institute for Applied Ecology, 2017.
Brown, Cheryl A., Darrin Sharp, Heejun Chang, and Madeline Steele. Effects of climate change on water quality in the Yaquina Estuary, Oregon [PowerPoint presentation] In The Oregon Water Conference 2011: Evaluating and Managing Water Resources in a Climate of Uncertainty., 2011.
Brown, Cheryl A., and Walter G. Nelson. "A method to identify estuarine water quality exceedances associated with ocean conditions." Environmental Monitoring and Assessment 187, no. Article 133 (2015): 14 p.
Burreson, Eugene M., and Robert E. Olson. "Seasonal variations in the populations of two hemiurid trematodes from the pacific staghorn sculpin Leptocottus armatus Girard, in an Oregon estuary." Journal of Parasitology 60 (1974): p.764-767.
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Callaway, Richard J., David T. Specht, and George R. Ditsworth. "Manganese and suspended matter in the Yaquina estuary, Oregon." Estuaries 11 (1988): 217-225.
Callaway, Richard J.. "Physical characteristics of the Yaquina estuary, Oregon." Estuaries 4 (1981): p.245-246.
Callaway, Richard J.. Applications of some numerical models to Pacific Northwest estuaries In The Proceedings of the 1971 Technical Conference on Estuaries of the Pacific Northwest. Corvallis, Or.: Oregon State University Engineering Experiment Station, 1971.
Carroll, Lindsa. HMSC high tide lesson plan: Salinity in the estuary In ORESU-E. Vol. no.17-040. Corvallis, Or.: Oregon State University. Sea Grant College Program and Hatfield Marine Science Center, 2018.
Courtright, Robert C., and Carl E. Bond. "Potential toxicity of kraft mill effluent after oceanic discharge." The Progressive Fish Culturist 31 (1969): p.207-212.
Crandell, George F.. Seasonal and Spatial Distribution of Harpacticoid Copepods in Relation to Salinity and Temperature in Yaquina Bay, Oregon. Ph. D. ed. Corvallis, Or.: Oregon State University, 1967.

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