Lee II, Henry, Deborah A. Reusser, Melanie R. Frazier, Lee M. McCoy, Patrick J. Clinton, Jonathan S. Clough, and U.S. Environmental Protection Agency. National Health and Environmental Effects Research Laboratory. Office of Research and Development. Western Ecology Division. Sea Level Affecting Marshes Model (SLAMM). Newport, Or., 2014.

Pilgrim, Erik M., Michael J. Blum, Deborah A. Reusser, Henry Lee II, and John A. Darling. "Geographic range and structure of cryptic genetic diversity among Pacific North American populations of the non-native amphipod Grandidierella japonica." Biological Invasions 15 (2013): p.2415-2428.

Lee II, Henry, and Deborah A. Reusser. Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific. Vol. EPA/600/R/12/631. National Health and Environmental Effects Research Laboratory. Office of Research and Development,, 2012.

Young, David R., Patrick J. Clinton, David T. Specht, Chris Mochon Collura, and Henry Lee II. "Determining bathymetric distributions of the eelgrass Zostera marina L. in three turbid estuaries on the eastern North Pacific coast." Botanica Marina 55 (2012): p.229-240.

Ruggiero, Peter, Cheryl A. Brown, Paul D. Komar, Jonathan C. Allan, Deborah A. Reusser, and Henry Lee II. "Impacts of climate change on Oregon?s coasts and estuaries." In Oregon Climate Assessment Report, edited by Kathie Dello and Philip W. Mote, p.211-268. Corvallis, Or.: Oregon State University. College of Oceanic and Atmospheric Sciences. Oregon Climate Change Research Institute,, 2010.

National Health and Environmental Effects Research Laboratory(U.S.). Western Ecology Division. Classification of Regional Patterns of Environmental Drivers and Benthic Habitats in Pacific Northwest Estuaries, Edited by Henry Lee II and Cheryl A. Brown. Vol. EPA 600/R-09/140., 2009.