Myers, Katherine W., and Howard F. Horton. "Temporal use of an Oregon estuary by hatchery and wild juvenile salmon." In Estuarine Comparison, edited by Victo(ed.) S. Kennedy, p.377-392. New York: Academic Press, 1982.

Krygier, Earl E., and Howard F. Horton. "Distribution, reproduction, and growth of Crangon nigricauda and Crangon franciscorum in Yaquina Bay, Oregon." Northwest Science 49 (1975): p.216-240.

Stoevener, Herbert H., Joseph B. Stevens, Howard F. Horton, Adam Sokoloski, Loys P. Parrish, and Emery N. Castle. Multi-disciplinary study of water quality relationships:  A case study of Yaquina Bay, Oregon. Vol. no.348. Agricultural Experiment Station Special Report no.348. Corvallis, Or.: Oregon State University Agricultural Experiment Station, 1972.

Stoevener, Herbert H., Joseph B. Stevens, and Howard F. Horton. Technical and economic issues in the water quality management in Yaquina Bay In The Proceedings of the Second Annual Technical Conference on Estuaries of the Pacific Northwest. Corvallis, Or.: Oregon State University, Engineering Experiment Station, 1972.

Parrish, Loys P., and Howard F. Horton. "Toxicity of kraft mill effluent to selected organisms from Yaquina Bay, Oregon." Northwest Science 45 (1971): p.244-251.

Beardsley, Alan J., and Howard F. Horton. "An ambicolored starry flounder from Yaquina Bay." California Fish and Game 51 (1965): p.126-128.

Long, J. B., and Howard F. Horton. Recreational and Commercial Use Pattern for the Fish and Wildlife Resources of Yaquina Bay, Oregon. [Corvallis, Or.]: [Department of Fish and Game Management, Oregon State University], 1963.