@article {36591,
	title = {Tsunami inundation maps for Yaquina River, Lincoln County, Oregon},
	volume = {No. TIM-Linc-09},
	year = {2013},
	note = {2 maps : col. ; 84 x 133 cm., on sheet 86 x 135 cm. Plate 1. Local source (Cascadia Subduction Zone) tsunami inundation map Yaquina River, Oregon -- Plate 2. Distance source (Alaska-Aleutian Subduction Zone) tsunami inundation map Yaquina River, Oregon.  May be viewed online at the NANOOS website (click on DOGAMI to access).},
	institution = {Oregon. Dept. of Geology and Mineral Industries},
	address = {Portland, Or.},
	keywords = {Boone Slough, coastal hazards, Craigie Point, earthquakes, Flesher Slough, Grassy Point, Green Point, maps, Nute Slough, tsunamis, Yaquina River},
	url = {https://pubs.oregon.gov/dogami/tim/p-TIM-Linc-09.htm},
	author = {Oregon. Dept. of Geology and Mineral Industries, and National Tsunami Hazard Mitigation Program (U.S.),}
}
@article {34466,
	title = {Utilization Patterns of Intertidal Habitats by Birds in Yaquina Estuary, Oregon},
	volume = {EPA/600/R-11/118},
	year = {2011},
	note = {"An assessment of bird utilization patterns of the intertidal soft sediment and low marsh habitats of the Yaquina estuary, Oregon was conducted from December 2007-November 2008. . . Gulls and terns comprised 42\% of the total birds and, together with ducks, shorebirds, corvids and geese, accounted for about 92\% of the total abundance. The addition of herons/egrets, rails (i.e. coots), and pelicans/cormorants comprised just over 98\% of all birds observed. The remaining birds consisted of songbirds, loons/grebes, raptors and alcids." (p.3)},
	month = {2011, Oct.},
	pages = {81 p.},
	address = {Newport, Or.},
	keywords = {American crow = Corvus brachyrhynchos, American wigeon = Anas Americana, birds, Boone Slough, Bufflehead = Bucephala albeola, Coquille Point, Criteser{\textquoteright}s Marina, eelgrass = Zostera marina, ghost shrimp = Neotrypaea californiensis, Grassy Point, Great blue heron = Ardea herodias, gulls = Larus species, habitats, Idaho Flats, Japanese eelgrass = Zostera japonica, Johnson Slough, King Slough, Mud shrimp = Upogebia pugettensis, Northern pintail = Anas acuta, Nute Slough, Oneatta Point, River Mile 7, River Mile 8, Sally{\textquoteright}s Bend, scaup = Aythya species, The Bend, tidal marsh, western sandpiper = Calidris mauri, Winant, Yaquina, Yaquina Bay, Yaquina River},
	url = {https://cfpub.epa.gov/si/si_public_file_download.cfm?p_download_id=503895\&Lab=NHEERL},
	author = {Lamberson, Janet O. and Frazier, Melanie R.. and Nelson, Walter G. and Patrick J Clinton and U.S. Environmental Protection Agency. Western Ecology Division,}
}
@article {33851,
	title = {Effects of the invasive, nonindigenous seagrass <i>Zostera japonica</i> on nutrient fluxes between the water column and benthos in a NE Pacific estuary},
	journal = {Marine Ecology Progress Series},
	volume = {254},
	year = {2003},
	month = {Jun 4_2003},
	pages = {69-80},
	keywords = {ammonium, biological, Coquille Point, Craigie Point, Criteser{\textquoteright}s Marina, Grassy Point, Idaho Point, Japanese eelgrass=Zostera japonica, King Slough, Montgomery Creek, nitrate-nitrite, nutrient cycles, Oneatta Point, Oysterville, phosphorus, Sally{\textquoteright}s Slough},
	doi = {10.3354/meps254069},
	url = {https://www.int-res.com/articles/meps2003/254/m254p069.pdf},
	author = {Larned, Scott T.}
}
@conference {33626,
	title = {Secondary production in coastal estuaries: Dungess crab and English sole as bioindicators},
	booktitle = {Pacific Northwest Coastal Ecosystems Regional Study Annual Report},
	series = {PNCERS Annual Report 2001},
	year = {2001},
	note = {This aspect of the PNCERS program is intended to provide a sense of spatial,temporal distribution and abundance of certain macrofauna in Oregon and Washington coastal estuaries.},
	month = {2002},
	pages = {p.79-90},
	publisher = {Coastal Ocean Programs, NOAA},
	organization = {Coastal Ocean Programs, NOAA},
	keywords = {abundance, biological, breakwater, dungeness crab=Metacarcinus magister (Cancer magister), English sole=Pleuronectes vetulus, Grassy Point, habitats, The Bend, Yaquina Bay, Yaquina Bay Bar},
	url = {https://ir.library.oregonstate.edu/concern/defaults/x346d5217},
	author = {Armstrong, David A. and Gunderson, Donald and Rooper, Chris},
	editor = {Parrish, J.K. and Litle, Kate}
}
@booklet {33461,
	title = {Yaquina and Alsea River Basins Estuarine Wetland Site Prioritization Project:  Final Report for MidCoast Watersheds Council},
	year = {1999},
	note = {This project, commissioned in 1998, is part of the MidCoast Watersheds Council{\textquoteright}s efforts to better understand the status and condition of the area{\textquoteright}s natural resources and to work with interested landowners to enhance and protect important areas.},
	month = {1999},
	pages = {50 p.},
	publisher = {Green Point Consulting,},
	address = {Corvallis, OR},
	keywords = {Alsea River estuary, biological, Blind Slough, Boone Slough, Depot Slough, eelgrass=Zostera japonica, eelgrass=Zostera marina, Flesher Slough, general, grasses, Grassy Point, King Slough, McCaffery Slough, Mill Creek, Montgomery Creek, Olalla Slough, Parker Slough, Pooles Slough, Toledo Airport, Weiser Point, wetland delineation, wetland mitigation, wetland vegetation, Yaquina River Basin},
	url = {https://ir.library.oregonstate.edu/concern/defaults/5x21tk796},
	author = {Brophy, Laura and Oregon. Governor{\textquoteright}s Watershed Enhancement Board, and MidCoast Watersheds Council.,}
}
@article {33026,
	title = {Preliminary reconnaissance survey of Cascadia paleotsunami deposits in Yaquina Bay, Oregon},
	journal = {Oregon Geology},
	volume = {57},
	number = {2},
	year = {1995},
	month = {March_1995},
	pages = {33-40},
	keywords = {coastal hazards, geological, Grassy Point, Idaho Flats, King Slough, paleosciences, Parker Slough, Pooles Slough, Sally{\textquoteright}s Bend, sediment data, tsunamis, Yaquina Bay},
	url = {https://pubs.oregon.gov/dogami/og/OGv57n02.pdf},
	author = {Peterson, Curt D. and Priest, George R.}
}
@article {32436,
	title = {Spatio-temporal fluctuations in the distribution and abundance of demersal fish and epibenthic crustaceans in Yaquina Bay, Oregon},
	journal = {Estuaries},
	volume = {13},
	number = {4},
	year = {1990},
	month = {December_1990},
	pages = {469-478},
	keywords = {abundance, aquatic invertebrates, biological, blacktail bay shrimp = Crangon nigricauda, buffalo sculpin = Enophrys bison, Buoy 14, California bay shrimp = Crangon franciscorum, community ecology, crustaceans, decapods, Dungeness crab = Metacarcinus magister (Cancer magister), English sole = Pleuronectes vetulus, fishes, geographical distribution, Grassy Point, McCaffery Slough, Mill Creek, Montgomery Creek, mysids, Neomysis mercedis, Pacific staghorn sculpin = Leptocottus armatus, Port of Newport Dock 5, River mile 16, River Mile 4, shiner perch = Cymatogaster aggregata, Snake prickleback = Lumpenus sagitta, species composition, species list, Starry flounder = Platichthys stellatus, surf smelt = Hypomesus pretiosus, temporal distribution, Toledo Airport, Upper Yaquina River, walleye surfperch = Hyperprosopon argenteum, White seaperch = Phanerodon furcatus, Yaquina Bay, Yaquina Bay Bridge},
	author = {DeBen, Waldemar A. and Clothier, William D. and Ditsworth, George R. and Baumgartner, Donald J.}
}
@article {31581,
	title = {Analyses of elutriates, native water, and bottom material in selected rivers and estuaries in western Oregon and Washington},
	volume = {no.82-922},
	year = {1983},
	note = {good data},
	month = {1983},
	pages = {147 p.},
	address = {Portland, Or.},
	keywords = {ammonia, arsenic, barium, berylium, Butler Bridge, cadmium, chemical, chromium, Coast Guard Station, Columbia River estuary, Coos River estuary, copper, cyanide, Depot Slough, Embarcadero Marina, Grassy Point, heavy metals, herbicides, iron, lead, Lower Yaquina River, manganese, mercury, methodology, nickel, nitrogen, nutrient cycles, Olalla Slough, organic carbon, pesticides, phenols, phosphorus, Pooles Slough, Sally{\textquoteright}s Bend, Tillamook estuary, Toledo Airport, Trace metals, Umpqua River estuary, water pollution, water quality data, Yaquina Bay, Yaquina Bay Bar, zinc},
	url = {https://pubs.usgs.gov/of/1982/0922/report.pdf},
	author = {U.S. Geological Survey,},
	editor = {Fuhrer, Gregory J. and Rinella, Frank A.}
}
@article {29626,
	title = {Oyster Mortality Study: Summary Report 1966-1972},
	year = {1974},
	month = {May_1974},
	pages = {37 p.},
	institution = {Fish Commission of Oregon},
	address = {[Portland, Or.]},
	keywords = {aquatic invertebrates, biological, bivalves, Blind Slough, Coos Bay, dissolved oxygen data, Grassy Point, growth, hydrology, Idaho Point, molluscs, nitrate-nitrite data, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Pacific oyster = Crassostrea gigas, Parker Slough, pH data, phosphate data, physical, River Mile 7, salinity data, shellfish disease, silicate data, The Bend, Tillamook Bay, turbidity data, water pollution, water temperature data, Yaquina Bay, Yaquina City},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/zk51vh562},
	author = {Gibson, Gary and Oregon. Fish Commission and U.S.  National Marine Fisheries Service,}
}
@proceedings {29356,
	title = {Multi-disciplinary study of water quality relationships:  A case study of Yaquina Bay, Oregon},
	volume = {no.348},
	year = {1972},
	note = {ill., maps ; 28 cm.  Introduction -- The demand for sport fishing at Yaquina Bay -- The impact of sport angling on the Yaquina Bay economy -- Alternative waste disposal methods -- The predicted influence of kraft mill effluent on the fisheries resources -- An economic evaluation of alternative levels of water quality -- Institutional considerations -- Resource management decisions -- Appendix I. Index estimation of angler effort -- Appendix II. Consumer{\textquoteright}s surplus as a measure of direct benefits -- Appendix III. Field survey questionnaire on yield and expenditures.},
	pages = {135 p.},
	publisher = {Oregon State University Agricultural Experiment Station},
	address = {Corvallis, Or.},
	keywords = {bioassay, chemical, commercial fisheries, ecological values, economics, ecosystem modeling, environmental policy and law, general, general ecosystem description, Grassy Point, industrial development, land use, natural resource management, outfall, pulp mill effluent, recreational fisheries, sulphate, toxicity, urban development, waste disposal, water pollution, water quality, water rights, water use, Yaquina Bay, Yaquina River},
	url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/1g05fg61j},
	author = {Stoevener, Herbert H. and Stevens, Joseph B. and Horton, Howard F. and Sokoloski, Adam and Parrish, Loys P. and Castle, Emery N.}
}
@proceedings {29351,
	title = {Technical and economic issues in the water quality management in Yaquina Bay},
	year = {1972},
	month = {March_1972},
	pages = {p.93-108},
	publisher = {Oregon State University, Engineering Experiment Station},
	address = {Corvallis, Or.},
	keywords = {commercial fisheries, demographics, economics, environmental policy and law, estuarine dynamics, general, Grassy Point, hydrology, industrial development, natural resource management, outfall, pulp mill effluent, recreational fisheries, tourism, water pollution, water quality, Yaquina Bay, Yaquina River},
	url = {https://repository.library.noaa.gov/view/noaa/34931},
	author = {Stoevener, Herbert H. and Stevens, Joseph B. and Horton, Howard F.}
}
@article {28871,
	title = {Oyster Mortality Study: Annual Report April 1, 1969-March 31, 1970},
	year = {1970},
	note = {"Objectives of Oregon{\textquoteright}s oyster mortality study for the past year included monitoring oyster mortality in Yaquina, Tillamook, and Coos bays, obtaining hydrographic data in Yaquina Bay; and furnishing oysters to the University of Washington and the Bureau of Commercial Fisheries (BCF) in Oxford, Maryland, for histological examination. Other activities included (1) determining seasonal growth of Pacific oysters in Yaquina Bay, (2) cooperating with the BCF Oxford laboratory on a study of the neoplastic disease in native oysters, Ostrea lurida, and (3) obtaining information on the longevity of Pacific oysters, Crassostrea gigas." (Introduction) During the study year, 8.6\% of Pacific oysters in Yaquina Bay and 26.5\% of the native Olympia oysters there died.},
	month = {1969/1970},
	pages = {23 p.},
	institution = {Fish Commission of Oregon},
	address = {[Portland, Or.]},
	keywords = {aquatic invertebrates, biological, bivalves, Coos River estuary, dissolved oxygen data, Grassy Point, growth, hydrology, Idaho Point, molluscs, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Pacific oyster=Crassostrea gigas, physical, River Mile 7, salinity data, The Bend, Tillamook estuary, turbidity data, water temperature data, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/r207tq124},
	author = {Gibson, Gary and Oregon. Fish Commission and U.S. Fish and Wildlife Service,}
}
@article {28711,
	title = {Oyster Mortality Study: Annual Report April 1, 1968-March 31, 1969},
	year = {1969},
	note = {"Objectives of Oregon{\textquoteright}s Oyster Mortality study for the year ending March 1969 were similar to those of the first 2 years of the program: (1) to monitor oyster mortality in Yaquina, Tillamook and Coos bays, (2) to collect hydrographic data in Yaquina Bay and (3) to furnish oysters to the University of Washington for comparative histological examination. Additional work was done on the seasonal growth of Pacific oysters, the survival and growth of native oysters from spat and low salinity tolerance of adult native oysters." (Introduction)},
	pages = {24 p.},
	institution = {Fish Commission of Oregon},
	address = {[Portland, Or.]},
	keywords = {aquatic invertebrates, biological, bivalves, Coos River estuary, dissolved oxygen data, Grassy Point, growth, hydrology, Idaho Point, molluscs, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Pacific oyster=Crassostrea gigas, physical, River Mile 7, salinity data, The Bend, Tillamook estuary, turbidity data, water temperature data, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/jw827c483},
	author = {Gibson, Gary and Oregon. Fish Commission and U.S. Fish and Wildlife Service,}
}
@mastersthesis {28571,
	title = {Distribution of Recent Foraminifera in Relation to Estuarine Hydrography, Yaquina Bay, Oregon},
	year = {1968},
	note = {Studied foraminifera in Yaquina Bay to see how seasonal changes in hydrography affected their distribution. Includes sediment maps of Yaquiina Bay and distribution maps for selected foraminifera. Includes plates with line drawings of foraminifera. Major professor was Dr. H. F. Frolander.  },
	month = {1968},
	pages = {176 p.},
	school = {Oregon State University},
	type = {Doctoral Dissertation},
	edition = {Ph. D.},
	chapter = {Dept. of Oceanography},
	address = {Corvallis, Or.},
	keywords = {aquatic invertebrates, biological, Coquille Point, Craigie Point, Depot Slough, estuarine dynamics, foraminifera, geographical distribution, Grassy Point, Hatfield Marine Science Center, Hinton Point, hydrology, Idaho Point, King Slough, McCaffery Slough, McLean Point, Oneatta Point, physical, Poole Slough, salinity data, Sally{\textquoteright}s Bend, temporal distribution, theses, water temperature data, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/zs25xc85p},
	author = {Manske, Douglas C.}
}
@article {28556,
	title = {Oyster Mortality Study: Annual Progress Report July 1, 1967-March 31, 1968},
	year = {1968},
	note = {"Objectives of Oregon{\textquoteright}s Oyster Mortality study for the year ending March 1969 were similar to those of the first 2 years of the program: (1) to monitor oyster mortality in Yaquina, Tillamook and Coos bays, (2) to collect hydrographic data in Yaquina Bay and (3) to furnish oysters to the University of Washington for comparative histological examination. Additional work was done on the seasonal growth of Pacific oysters, the survival and growth of native oysters from spat and low salinity tolerance of adult native oysters." (Introduction)},
	month = {March_1969},
	pages = {12 p.},
	institution = {Fish Commission of Oregon},
	address = {[Portland, Or.]},
	keywords = {aquatic invertebrates, biological, bivalves, Coos Bay, dissolved oxygen data, Grassy Point, growth, hydrography, hydrology, Idaho Point, molluscs, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Pacific oyster=Crassostrea gigas, physical, River Mile 7, salinity data, The Bend, Tillamook estuary, turbidity data, water temperature data, Yaquina, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/mw22v6241},
	author = {Gibson, Gary and Oregon. Fish Commission and U.S. Fish and Wildlife Service,}
}
@article {28436,
	title = {Oyster Mortality Study: Annual Progress Report July 1, 1966-June 30, 1967},
	year = {1967},
	note = {"Although Oregon has been relatively free from any major oyster mortality a monitoring program has been established with the basic objectives being to: (1) monitor mortalities; (2) collect environmental data; and (3) furnish oyster from a disease-free area for histological examination." (Introduction) Includes hydrographic data from test plots in Yaquina, Tillamook and Coos Bays, size and condition data for native Olympia oysters as well as Pacific oysters and a record of oyster mortalities for Yaquina Bay.},
	month = {1967, Sep.},
	pages = {11 p.},
	institution = {Fish Commission of Oregon},
	address = {[Portland, Or.]},
	keywords = {aquatic invertebrates, biological, bivalves, Coos Bay, dissolved oxygen data, Grassy Point, growth, hydrology, Idaho Point, molluscs, Olympia oyster = Ostrea lurida (Ostrea conchaphila), Pacific oyster = Crassostrea gigas, physical, River Mile 7, salinity data, The Bend, Tillamook Bay, turbidity data, water temperature data, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/pr76f4013},
	author = {Gibson, Gary and Oregon. Fish Commission and U.S. Fish and Wildlife Service,}
}
@article {28441,
	title = {Oyster Mortality Study: Hydrographic Data for Yaquina, Coos, and Tillamook Bays},
	year = {1967},
	note = {Accompanies Oyster Mortality Study, 1966/1967 report. "Tables 1 through 5 give salinity, temperature, dissolved oxygen, turbidity, and pH data for Yaquina Bay while Table 6 gives temperature and salinity for Tillamook and Coos bays.""This information appears in the quarterly and annual reports as either mean values or ranges, but is presented in the following tables as collected. It is hoped that this information can be used for comparison in areas where high oyster mortalities occur." (from the Introduction)},
	month = {December_1967},
	pages = {24 p.},
	institution = {Fish Commission of Oregon},
	address = {[Portland, Or.]},
	keywords = {Blind Slough, Coos River estuary, dissolved oxygen data, Grassy Point, hydrography, hydrology, Marine Science Center Dock, Parker Slough, pH data, physical, River Mile 7, salinity data, The Bend, Tillamook estuary, water temperature data, Yaquina Bay, Yaquina City},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/ms35t9138},
	author = {Gibson, Gary and Snow, C. Dale and Oregon. Fish Commission and U.S. Fish and Wildlife Service,}
}
@article {28121,
	title = {Alternatives for Disposal of Kraft Mill Wastes in Yaquina Estuary, Oregon},
	year = {1963},
	note = {"The purpose of this report is to evaluate alternate engineering plans for the disposal of wastes from a kraft process pulp and paper mill located at Toledo, Oregon. These alternatives have been evaluated from the standpoint of estimated annual cost and estimated resulting pollution of Yaquina Estuary in order to provide data for co-investigators on research grant R6-9515 "An Economic Evaluation of Water Pollution Control." (p.1)},
	month = {September_1963},
	pages = {28 p.},
	address = {Corvallis, Or.},
	keywords = {chemical, computer programs, dissolved oxygen, Grassy Point, McLean Point, outfall, physical, pulp mill effluent, Toledo, waste disposal, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/1544bp64r},
	author = {Harris, Dennis R.}
}
@article {27986,
	title = {Recent studies in the hydrography of Oregon estuaries},
	journal = {Research Briefs.  Fish Commission of Oregon},
	volume = {7},
	number = {1},
	year = {1959},
	month = {July_1959},
	pages = {p.14-27},
	keywords = {Alsea Bay, aquatic invertebrates, bivalves, estuarine dynamics, Grassy Point, hydrology, molluscs, Netarts Bay, physical, physical modifications, salinity data, Siletz Bay, Siuslaw River estuary, Umpqua River estuary, water pollution, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/p2676w188},
	author = {Burt, Wayne V. and McAlister, W. Bruce}
}
@article {27921,
	title = {Computation of pollution in the Yaquina River estuary},
	journal = {Sewage and Industrial Wastes},
	volume = {29},
	number = {12},
	year = {1957},
	month = {December_1957},
	pages = {p.1385-1389},
	keywords = {Elk City, Grassy Point, McLean Point, outfall, pulp mill effluent, salinity data, statistical analysis, Toledo, water pollution, Yaquina Bay, Yaquina Bay Bridge, Yaquina City, Yaquina River},
	author = {Burt, Wayne V. and Marriage, Lowell D.}
}
@article {27886,
	title = {Flushing of pollutants in the Yaquina River estuary},
	volume = {no.1},
	year = {1956},
	note = {Mimeograph. "The purpose of this study is to estimate the time and space distribution which pollutants would assume if they were introduced at various places in the Yaquina Bay and River system." (p.1) At this time, during heavy rains sewage runoff from the City of Toledo was dumped into the river. The report suggests possible locations for sewage outfalls that would reduce river pollution.  Reference 56-1.},
	month = {April_1956},
	pages = {25 p.},
	institution = {Oregon State College, School of Science},
	address = {Corvallis, Or.},
	keywords = {estuarine dynamics, Grassy Point, hydrology, McLean Point, outfall, physical, pulp mill effluent, salinity data, tidal data, Toledo, water pollution, Yaquina Bay, Yaquina Bay Bridge, Yaquina City, Yaquina River},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/1j92g781d},
	author = {Burt, Wayne V.}
}
