@article {83188, title = {Discovery of a large offshore population of the northeast Pacific burrowing shrimp Neotrypaea sp. (Decapoda: Axiidea)}, journal = {Estuarine, Coastal and Shelf Science}, volume = {274}, number = {107936}, year = {2022}, note = {The ghost shrimp, Neotrypaea spp., has long been known as a burrower in soft estuarine sediments. While scattered numbers of ghost shrimp were found on the continental shelf, they were believed to be strays from estuaries; that is, until 2019, when a large population of ghost shrimp was found on the continental shelf off Newport in waters 58-77 meters deep. The offshore population was thought to be giant ghost shrimp (Neotrypaea gigas), known to be present in Yaquina Bay, but not often written about. This population has multiple years and multiple size classes. {\textquotedblleft}This is the first report of a major burrowing shrimp population on the continental northeast Pacific coastal ocean{\textquotedblright} (from the Abstract). Is a native species expanding or shifting its habitats in response to climate or other anthropogenic change? Or does this find represent an introduction of a new species? Stay tuned{\textellipsis} This is an open-access article.}, month = {2022}, pages = {11 p.}, keywords = {Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), Giant ghost shrimp = Neotrypaea gigas, habitats, morphology, sediments, taxonomy, water temperature, Willapa Bay, Yaquina Bay}, doi = {https://doi.org/10.1016/j.ecss.2022.107936 }, url = {https://www.sciencedirect.com/science/article/abs/pii/S0272771422001949?via\%3Dihub}, author = {Henkel, Sarah K. and Revelas, Eugene C. and Wodzicki, Stefan and Chapman, John} } @mastersthesis {83187, title = {Morphology, Sediment Microbial Analysis, and Species Distribution Modeling of a New Offshore Population of Ghost Shrimp (Neotrypaea sp.)}, year = {2022}, note = {Ghost shrimp (Neotrypaea spp.) are typically seen as burrowing species in estuaries. In 2019, after years of abnormally warm offshore waters, a population of ghost shrimp was discovered about 7 miles offshore of Newport, Oregon. The author of this Master{\textquoteright}s thesis attempts to answer some questions about the newly revealed enclave. Was the new population a new species? Examination revealed that the offshore ghost shrimp closely resembled the giant ghost shrimp, which is found in Yaquina Bay, except for the eyestalk. Could the sediment microbial communities in the new deep-water habitat support the shrimp? Researchers learned that, {\textquotedblleft}Bacteria of the genus Shewanella, which have been shown to induce oyster and mussel settlement and metamorphosis, were found in both the estuary and offshore locations and in five times greater abundance with Neotrypaea than without{\textquotedblright} (from the Abstract). Finally, the author attempted to predict where other offshore populations of ghost shrimp might be found, and found clusters off Nehalem and Nestucca estuaries. The major professor was Sarah K. Henkel.}, month = {2022}, pages = {81 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Integrative Biology}, address = {Corvallis, Or.}, keywords = {bacteria, Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), Giant ghost shrimp = Neotrypaea gigas, habitats, Microbiome, morphology, Nehalem River, Nestucca River, sediments, taxonomy, water temperature, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/s4655q555 }, author = {Hardisty, Sarah} } @article {82016, title = {Ecological and biological studies of ocean rafting: Japanese tsunami marine debris in North America and the Hawaiian Islands}, journal = {Aquatic Invasions}, volume = {13}, year = {2018}, note = {{\textquotedblleft}This is one of the papers from the special issue of Aquatic Invasions on {\textquoteleft}Transoceanic Dispersal of Marine Life from Japan to North America and the Hawaiian Islands as a Result of the Japanese Earthquake and Tsunami of 2011.{\textquoteright}{\textquotedblright} (Co-Editors{\textquoteright} Note). This article is an introduction to the special issue of Aquatic Invasions. It summarizes the largest examples of tsunami debris found on the American Pacific coast and recounts the discovery of many new Japanese species identified as a result of research. Includes color photographs. This is an open-access article.}, month = {2018, Feb.}, pages = {p.1-9}, keywords = {Agate Beach, algae, aquatic invertebrates, coastal hazards, Coos Bay, earthquakes, genetics, geographical distribution, Gleneden Beach, introduced species, morphology, Pacific Coast, Seal Rock, species list, taxonomy, tsunamis}, doi = {https://doi.org/10.3391/ai.2018.13.1.01}, url = {https://tinyurl.com/2pxmp6e8}, author = {Carlton, James T. and Chapman, John W. and Geller, Jonathan B. and Miller, Jessica A. and Ruiz, Gregory M. and Carlton, Deborah A. and McCuller, Megan I. and Treneman, Nancy C. and Steves, Brian P. and Breitenstein, Ralph A. and Lewis, Russell and Bilderback, David and Bilderback, Diane and Haga, Takuma and Harris, Leslie H.} } @article {83011, title = {Expansion and systematics redefinition of the most threatened freshwater mussel family, the Margaritiferidae}, journal = {Molecular Phylogenetics and Evolution}, volume = {127}, year = {2018}, note = {In this article, the evolution, distribution and taxonomy of the freshwater pearl mussel family, Margaritiferidae, is explored. Fossils as well as genetic data were used to model the diversification of this family. Maps, charts.}, month = {2018, Oct.}, pages = {p.98-118}, keywords = {aquatic invertebrates, bivalves, evolution, general, genetics, geographic distribution, molluscs, morphology, mussels, phylogeny, taxonomy}, doi = {https://doi.org/10.1016/j.ympev.2018.04.041 }, author = {Lopes-Lima, Manuel and Bolotov, Ivan N. and Do, Van Tu and Aldridge, David C. and Fonseca, Miguel M. and Gan, Han Ming and Gofarov, Mikhail Y. and Kondakov, Alexander V. and Pri{\'e}, Vincent and Sousa, Ronaldo and Varandas, Simone and Vikhrev, Ilya V. and Teixeira, Amilcar and Wu, Rui-Wen and Wu, Xiaoping and Zieritz, Alexandra and Froufe, Elsa and Bogan, Arthur E.} } @book {80381, title = {Oregon Estuarine Invertebrates: Rudy{\textquoteright}s Illustrated Guide to Common Species}, volume = {1-3}, year = {2017}, note = {"Original edition by Paul and Lynn Rudy." Volume 1. Cnidaria, Nemertea, Annelida, Sipuncula -- , Volume 2. Arthropoda -- , Volume 3. Mollusca, Phoronida, Echinodermata, Chordata, appendices. Advances in genetics have revolutionized the classification of aquatic invertebrates. Many animals have been given new names that more accurately reflect their relationships with other species. For this reason, it was necessary to create a new edition of Paul and Lynn Rudy{\textquoteright}s classic {\textquotedblleft}Oregon Estuarine Invertebrates.{\textquotedblright} This third edition is a vast, although not quite complete, three-volume expansion of the original work. Rudy{\textquoteright}s original line drawings have been retained. There is a new section on taxonomy, and most descriptive sections have been expanded. The bibliography section has been brought up-to-date with contemporary references. The invaluable {\textquotedblleft}Possible Misidentifications{\textquotedblright} section has been expanded. A few species not yet updated will follow. This magnum opus is available on the internet and should be referenced by anyone wanting to identify and learn more about these familiar, fascinating animals.}, publisher = {University of Oregon Libraries, Oregon Institute of Marine Biology}, organization = {University of Oregon Libraries, Oregon Institute of Marine Biology}, edition = {3rd ed.}, chapter = {865 p.}, address = {[Charleston, Oregon] }, keywords = {annelids, aquatic invertebrates, aquatic worms, arthropods, bibliography, brachiopods, cnidarians, echinoderms, general, identification, molluscs, segmented worms, taxonomy, tunicates}, url = {https://scholarsbank.uoregon.edu/xmlui/handle/1794/18839 }, author = {Hiebert, Terra C. and Butler, Barbara and Shanks, Alan L. and Rudy, Paul} } @article {77296, title = {Genomic and phylogenetic analysis of Ceramium cimbricum (Ceramiales, Rhodophyta) from the Atlantic and Pacific Oceans supports the naming of a new invasive Pacific entity Ceramium sungminbooi sp. Nov.}, journal = {Botanica Marina}, volume = {59A}, year = {2016}, note = {The flow of introduced species across the Pacific Ocean is from East to West. That is, most introduced species on the U.S. West Coast come from Asia. This is true in the case of Ceramium sungminbooi, a red alga from Korea. This article describes the distinction between the Asian type of Ceramium as opposed to the European species, Ceramium cimbricum and calls for the Asian species now on the American West Coast to be recognized as a new species. {\textquotedblleft}It is unknown whether C. sungminbooi was introduced to Oregon as a result of oyster mariculture or if it was hull-borne.{\textquotedblright} (p.219) Free access to an ahead-of-print version of this article is available.}, month = {2016}, pages = {p.211-222}, keywords = {aquatic vegetation, Coos Bay, genetics, Hatfield Marine Science Center, introduced species, new species description, red algae, taxonomy, Yaquina Bay}, doi = {doi 10.1515/bot-2016-0036}, author = {Hughey, Jeffery R. and Boo, Ga Hun} } @article {80506, title = {A new species of Halolaelapidae (Acari: Mesostigmata: Rhodacaroidea) from beach wrack in Yaquina Bay, Oregon, USA, with comments on opisthonotal plasticity and cribral development in the family}, journal = {Journal of Natural History}, volume = {50}, year = {2016}, note = {This article describes a new species of mite, Halolaelaps hatfieldi, found in the summer of 2013 on decomposing sea lettuce ()Ulva)) and eelgrass in a backwater of Yaquina Bay near the Hatfield Marine Science Center. The species is described through different life phases and diagnostic characteristics are given. The author discusses certain anatomical features and hypotheses about their possible functions. The species is named after the Hatfield Marine Science Center.}, pages = {p. 1797-1812}, keywords = {arthropods, eelgrass = Zostera marina, Halolaelaps hatfieldi, Hatfield Marine Science Center, morphology, taxonomy, Ulva species, Yaquina Bay}, doi = {http://dx.doi.org/10.1080/00222933.2016.1170904 }, author = {Krantz, G. W.} } @article {83284, title = {Partial skeleton of a bony-toothed bird from the late Oligocene/early Miocene of Oregon (USA) and the systematics of neogene Pelagornithidae}, journal = {Journal of Paleontology}, volume = {87}, number = {5}, year = {2013}, note = {Had you the ability to go back in time 23-25 million years before the present, you might have seen a toothed bird like this specimen found near Newport in the Nye Mudstone formation.}, month = {2013, Sep.}, pages = {p. 922-929}, keywords = {birds, Moore Creek, Newport (Or.), paleontology, taxonomy}, doi = {https://doi.org/10.1666/13-025 }, author = {Mayr, Gerald and Goedert, James L. and McLeod, Samuel A.} } @article {34526, title = {Genetic diversity, endemism and phylogeny of lampreys within the genus Lampetra sensu stricto (Petromyzontiformes: Petromyzontidae) in western North America}, journal = {Journal of Fish Biology}, volume = {81}, number = {6}, year = {2012}, note = {Describes the phylogenetic relationships between West Coast lamprey populations. The Siuslaw River brook lamprey population was among the most genetically distinct.}, month = {2012, Nov.}, pages = {p.1891-1914}, keywords = {Alsea River, Coos River, Cow Creek, East Fork Millicoma River, Fishawk Creek, genetics, Mill Creek, Necanicum River, Nehalem River, North Fork Siuslaw River, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), River lamprey = Lampetra ayresi, Siuslaw River, taxonomy, Umpqua River, Western brook lamprey = Lampetra richardsoni, Wilson River, Yaquina River}, doi = {10.1111/j.1095-8649.2012.03417.x}, author = {Boguski, D. A. and Reid, S. B. and Goodman, D. H. and Docker, M. F.} } @article {80251, title = {Inflorescences and compound leaves of the extinct Platanus neptuni complex in the Oligocene of Oregon, USA}, journal = {Acta Palaeobotanica}, volume = {50}, year = {2010}, note = {On the central Oregon coast, terrestrial fossils are rarely found. This article describes the dominant flora species that seems to have flourished about 28 million years ago, on land on a deltaic plain of the ancestral Yaquina River. The fossils of this extinct species were found between the upper and lower marine tongues of the Yaquina Formation. The article discusses the taxonomy and worldwide distribution of the Platanus genus and mentions associated flora. The fossils recovered on Yaquina Bay are now housed in the U.S. National Museum.}, pages = {p.5-15}, keywords = {fossils, geology, Oligocene, paleosciences, taxonomy, terrestrial vegetation, The Bend, Yaquina Formation, Yaquina River}, author = {Manchester, Steven R. and Kva{\v c}ek, Zlatko} } @article {34316, title = {Nuclear rDNA sequences of Wittrockiella amphibia (Collins) comb. nov. (Cladophorales, Chlorophyta) and morphological characterization of the mat-like growth form}, journal = {Botanica Marina}, volume = {53}, number = {4}, year = {2010}, note = {"Cladophora amphibia was found in Yaquina Bay (Oregon, USA) for the first time since the type collection from California in 1903. Vegetative plants were buried in the top centimeter of intertidal mud, partially covered by mats of Rhizoclonium and Chaetomorpha."}, pages = {p.351-356}, keywords = {algal species, Cladophora amphibia, genetics, taxonomy, Wittrockiella amphibia (Collins) comb. nov., Wittrockiella paradoxa, Yaquina Bay}, doi = {10.1515/BOT.2010.040}, author = {Boedeker, Christian and Hansen, Gayle I.} } @book {83008, title = {Freshwater Mussels of the Pacific Northwest}, year = {2009}, note = {2nd edition. Freshwater mussels are among the most endangered animals on earth. Over 70\% of all freshwater mussel species in North America are considered threatened or endangered, and 35 species are believed to be extinct. Freshwater mussels serve as important bioindicators, being sensitive to stream temperatures, dissolved oxygen, sedimentation and pollution. This valuable guide will aid in awareness of the value of these species, as well as in identification.}, pages = {51 p.}, publisher = {Xerxes Society for Invertebrate Conservation}, organization = {Xerxes Society for Invertebrate Conservation}, edition = {2nd}, chapter = {51 p.}, address = {Portland, Or. }, keywords = {anatomy, aquatic invertebrates, bivalves, general, life history information, mollusks, mussels, taxonomy, water quality}, url = {https://xerces.org/sites/default/files/2018-05/09-002_02_XercesSoc_Freshwater-Mussels-of-the-PNW_web.pdf}, author = {Nedeau, Ethan Jay and Smith, Allan K. and Stone, Jen and Jepsen, Sarina} } @article {33746, title = {Simocetus rayi (Odontoceti: Simocetidae, New Family): a bizarre new archaic Oligocene dolphin from the Eastern North Pacific}, journal = {Smithsonian Contributions to Paleobiology}, volume = {no.93}, year = {2002}, note = {Describes a fossil skull of an unusual archaic dolphin, which "was perhaps a bottom feeder that preyed through suction feeding on soft-bodied invertebrates." This species is believed to have had echolocation abilities. The specimen was found "[near the] intersection of North Yaquina Bay Road and Toledo Road, Lincoln County, USA."}, pages = {p.185-222}, keywords = {Alsea Formation, marine mammals, new species description, paleosciences, taxonomy, Yaquina River}, author = {Fordyce, R. Ewan} } @book {25996, title = {Oregon lampreys: natural history, status and analysis of management issues}, series = {Information Reports (Oregon. Fish Division)}, number = {2002-01}, year = {2002}, note = {Lampreys have been declining in Oregon. This report looks at what is known about the species and possible causes for the decline. Colored maps, charts and photographs. "This paper concludes with a Problem Analysis for Oregon lampreys. Our biggest problem is poor information, ranging from not knowing basic species identity to having inefficient or no systematic monitoring of lamprey abundance and distribution." (Executive Summary, p.2)}, month = {2002}, pages = {80 p.}, publisher = {Oregon Dept. of Fish and Wildlife}, organization = {Oregon Dept. of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {Alsea River, Beaver Creek, Coos River, Coquille River, depleted populations, Drift Creek, Gold Ray Dam, Kilchis River, life history information, Necanicum River, Nehalem River, North Umpqua River, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), population biology, population count, reproductive behavior, Rogue River, Salmon River, Siletz River, Siuslaw River, Smith River, South Umpqua River, taxonomy, Tenmile Creek, Western brook lamprey = Lampetra richardsoni, Wilson River, Winchester Dam, Yachats River, Yaquina River}, url = {https://digital.osl.state.or.us/islandora/object/osl:18613}, author = {Kostow, Kathryn Eileen} } @article {33646, title = {Petition to List the North American Green Sturgeon (Acipenser medirostris) as an Endangered or Threatened Species under the Endangered Species Act}, year = {2001}, note = {This is a petition to the National Marine Fisheries Service. The species was ultimately not listed as "threatened" or "endangered." Good biological data, summaries of what is known about sturgeon in each estuary.}, pages = {81 p.}, address = {Garberville, Calif.}, keywords = {commercial fisheries, Coos Bay, depleted populations, fecundity, feeding behavior, Green sturgeon = Acipenser medirostris, growth, habitats, historical, juvenile fish, life history information, natural resource management, predation, recreational fisheries, reproductive behavior, Rogue River, Smith River, taxonomy, Toledo, Umpqua River, Yaquina River}, url = {https://www.biologicaldiversity.org/species/fish/North_American_green_sturgeon/pdfs/PETITION.PDF}, author = {Environmental Protection Information Center, and Center for Biological Diversity, and WaterKeepers Northern California, and U.S.. National Marine Fisheries Service,} } @conference {32726, title = {Are we really testing one species? A story of Corophium taxonomy [abstract]}, booktitle = {Abstracts, 13th Annual Meeting, 8-12 November 1992, Cincinnati Convention Center, Cincinnati, Ohio}, year = {1992}, note = {Abstract no. HA6A20. Society of Environmental Toxicology and Chemistry (SETAC). Meeting held November 8-12, 1992.}, pages = {p. 268 }, publisher = {Society of Environmental Toxicology and Chemistry}, organization = {Society of Environmental Toxicology and Chemistry}, address = {Cincinnati, OH}, keywords = {amphipods, biological, taxonomy, Yaquina Bay}, author = {Redmond, M.S. and Jones, J.K.P. and Lamberson, J.O. and Chapman, J. and Society of Environmental Toxicology and Chemistry,} } @article {32651, title = {Report of the Kumamoto brood stock workshop. January 24, 1992. Oregon State University. Portland, Oregon}, volume = {no.92-002}, year = {1992}, note = {The Kumamoto oyster is closely related to the Pacific oyster, which was preferred by Japanese oyster growers. The Kumamoto oyster was virtually extinct in Japan, but could still be found on the U.S. West Coast. The purpose of the workshop was to develop advocacy and methods to preserve the Kumamoto oyster and its genetic diversity.}, month = {January, 1992}, pages = {15 p.}, institution = {Oregon Sea Grant}, address = {Corvallis, Or.}, keywords = {aquaculture, Coos River estuary, depleted populations, genetics, historical, kumamoto oyster=Crassostrea sikamea, Pacific oyster=Crassostrea gigas, physiology, reproductive behavior, taxonomy, Tillamook estuary, Yaquina Bay}, url = {https://repository.library.noaa.gov/view/noaa/34981}, author = {Hedgecock, Dennis and Robinson, Anja M.} } @article {32336, title = {Species profiles : life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest) : English sole}, volume = {no. 82-11.101.}, year = {1989}, note = {Estuaries serve as nurseries for young English sole, although adult fish migrate to the ocean. This is a classic overview of the biology and life history of English sole in the Pacific Northwest. Good bibliography, if a bit dated.Map, charts, line drawings.}, pages = {17 p.}, keywords = {Alsea Bay, commercial fisheries, Coos Bay, Coquille Bay, English sole = Parophrys vetulus, fecundity, growth, juvenile fish, life history information, Nestucca Bay, Netarts Bay, recreational fisheries, reproductive behavior, Salmon River Estuary, Sand Lake, Siletz Bay, Siuslaw Bay, taxonomy, Tillamook Bay, Umpqua River estuary, Winchester Bay, Yaquina Bay}, url = {https://archive.org/details/DTIC_ADA214303}, author = {Lassuy, Dennis R. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and U.S.National Wetlands Research Center} } @article {32341, title = {Species profiles : life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest) : pacific herring}, volume = {no. 82-11.126}, year = {1989}, note = {This is a classic overview of the biology and life history of Pacific herring in the Pacific Northwest. Good bibliography, if a bit dated. Map, charts, line drawings. Yaquina Bay is the onlyOregon bay that supports a commercial roe fishery, but Coos, Umpqua, and Tillamook Bays support smaller bait and recreational fisheries..." (p.9)}, pages = {18 p.}, institution = {: U.S. Army Corps of Engineers, Coastal Ecology Group, Waterways Experiment Station}, address = {Vicksburg, MS}, keywords = {Alsea Bay, commercial fisheries, Coos Bay, Coquille Bay, fecundity, fishes, growth, juvenile fish, life history information, Nehalem Bay, Nestucca Bay, Netarts Bay, Pacific herring = Clupea pallasi, recreational fisheries, reproductive behavior, Sand Lake, Siletz Bay, Siuslaw Bay, taxonomy, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://archive.org/details/DTIC_ADA224836}, author = {Lassuy, Dennis R. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and U.S.National Wetlands Research Center} } @article {32301, title = {Species profiles : life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): Olympia oyster}, volume = {no. 82-11.124}, year = {1989}, note = {This is a classic overview of the biology and life history of the Olympia oyster in the Pacific Northwest. Good bibliography, if a bit dated.Map, charts, line drawings.}, pages = {8 p.}, keywords = {Alsea Bay, bivalves, Chetco River estuary, commercial fisheries - shellfish, Coos Bay, Coquille Bay, fecundity, general, growth, life history information, molluscs, Nehalem Bay, Nestucca Bay, Netarts Bay, Olympia oyster = Ostrea conchaphila (Ostrea lurida), recreational fisheries - shellfish, reproductive behavior, Rogue River estuary, Sand Lake, Siletz Bay, Siuslaw Bay, taxonomy, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://archive.org/details/DTIC_ADA225231}, author = {Couch, David and Hassler, Thomas J. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and U.S.National Wetlands Research Center} } @book {83293, title = {Species profiles: life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): sea-run cutthroat trout}, series = {Biological Report (Washington, D.C.)}, volume = {no.82-11.86}, year = {1989}, month = {1989}, pages = {21 p.}, publisher = {Coastal Ecology Group, Waterways Experiment Station, U.S. Army Corps of Engineers}, organization = {Coastal Ecology Group, Waterways Experiment Station, U.S. Army Corps of Engineers}, address = {Vicksburg, Miss.}, keywords = {cutthroat trout = Oncorhynchus clarki, geographic distribution, habitats, life history information, logging, Nehalem River, Nestucca River, taxonomy, Trask River, water quality, water temperature}, url = {https://webharvest.gov/peth04/20041023214018/http://www.nwrc.usgs.gov/wdb/pub/0176.pdf}, author = {Pauley, Gilbert B. and Oshima, Kevin and Bowers, Karen L. and Thomas, G. L.} } @book {32366, title = {Species profiles: life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): coho salmon}, series = {Biological Report (Washington, D.C.)}, volume = {no.82-11.86}, year = {1989}, month = {1989}, pages = {21 p.}, publisher = {Coastal Ecology Group, Waterways Experiment Station, U.S. Army Corps of Engineers}, organization = {Coastal Ecology Group, Waterways Experiment Station, U.S. Army Corps of Engineers}, address = {Vicksburg, Miss.}, keywords = {cutthroat trout = Oncorhynchus clarki, geographic distribution, habitats, life history information, logging, Nehalem River, Nestucca River, taxonomy, Trask River, water quality, water temperature}, url = {https://webharvest.gov/peth04/20041023214018/http://www.nwrc.usgs.gov/wdb/pub/0176.pdf}, author = {Pauley, Gilbert B. and Oshima, Kevin and Bowers, Karen L. and Thomas, G. L.} } @article {32311, title = {Species profiles : life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest) : ghost shrimp and blue mud shrimp}, volume = {no. 82-11.93}, year = {1989}, note = {This is a classic overview of the biology and life history of ghost shrimp and mud shrimp in the Pacific Northwest, although the heavily parasitized mud shrimp may soon become extinct in Oregon estuaries. Good bibliography, if a bit dated. Map, charts, line drawings.}, pages = {14 p.}, keywords = {Alsea Bay, Chetco River estuary, Columbia River estuary, commercial fisheries - shellfish, Coos Bay, Coquille Bay, crustaceans, fecundity, general, Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), growth, life history information, Mud shrimp = Upogebia pugettensis, Nehalem Bay, Nestucca Bay, Netarts Bay, recreational fisheries - shellfish, reproductive behavior, Rogue River estuary, Salmon River Estuary, Sand Lake, Siletz Bay, Siuslaw Bay, taxonomy, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://archive.org/details/DTIC_ADA206132}, author = {Hornig, Susanna and Sterling, Anita and U.S.National Wetlands Research Center and Stanley D. (Stanley DeWitt) Smith and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and U.S.National Wetlands Research Center} } @book {24756, title = {Species profiles: life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): coho salmon}, series = {Biological Report (Washington, D.C.)}, volume = {no.82 (11.48)}, year = {1986}, note = {This is a classic overview of the biology and life history of coho salmon in the Pacific Northwest. Good bibliography, if dated.Map, charts, line drawings.}, month = {1986}, pages = {18 p.}, publisher = {U.S. Fish and Wildlife Service; U.S. Army Engineer Waterways Experiment Station}, organization = {U.S. Fish and Wildlife Service; U.S. Army Engineer Waterways Experiment Station}, address = {Washington, D.C.; Vicksburg, Miss.}, keywords = {Alsea River, Coho salmon = Oncorhynchus kisutch, Coquille River, geographic distribution, habitats, life history information, Nehalem River, Nestucca River, North Umpqua River, Rogue River, Siletz River, Siuslaw River, Smith River, South Umpqua River, taxonomy, Trask River, Umpqua River, water quality, water temperature}, url = {https://archive.org/details/DTIC_ADA172613}, author = {Laufle, Jeffrey C. and La Touche, Yves David. and Pauley, Gilbert B. and Shepard, Michael F. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and National Coastal Ecosystems Team (U.S.),} } @article {31941, title = {Species profiles : life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): Dungeness crab}, volume = {no. 82-11.63}, year = {1986}, note = {This is a classic overview of the biology and life history of the Dungeness crab in the Pacific Northwest. Good bibliography, if a bit dated.Map, charts, line drawings.}, pages = {20 p.}, keywords = {Alsea Bay, Chetco River estuary, Columbia River estuary, commercial fisheries - shellfish, Coos Bay, Coquille Bay, crustaceans, Dungeness crab = Metacarcinus magister (Cancer magister), fecundity, general, growth, life history information, Nehalem Bay, Nestucca Bay, Netarts Bay, recreational fisheries - shellfish, reproductive behavior, Rogue River estuary, Salmon River Estuary, Sand Lake, Siletz Bay, Siuslaw Bay, taxonomy, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://apps.dtic.mil/sti/pdfs/ADA181590.pdf}, author = {Pauley, Gilbert B. and Armstrong, David A. and Heun, Thomas W. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and U.S.National Wetlands Research Center} } @article {31546, title = {Oregon estuarine invertebrates : an illustrated guide to the common and important invertebrate animals}, volume = {no.83/16}, year = {1983}, note = {A classic. Excellent line drawings of animals. Section on what species might be confused with is quite useful. A bit old now, and many of the species names have changed, but still a useful resource.}, pages = {224 p.}, keywords = {cnidarians, crustaceans, molluscs, taxonomy}, url = {https://scholarsbank.uoregon.edu/xmlui/bitstream/handle/1794/1070/estuarine_invertebrates.pdf?sequence=3}, author = {Rudy, Paul Jr. and Rudy. Lynn Hay and Watson, Jay F.} } @book {31446, title = {Species Profiles : Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Pacific Northwest) : Chinook Salmon}, series = {FWS/OBS}, volume = {no.82 (11.6)}, year = {1983}, note = {Good bibliography.}, month = {1983}, pages = {16 p.}, publisher = {U.S. Dept. of the Interior, U.S. Fish and Wildlife Service}, organization = {U.S. Dept. of the Interior, U.S. Fish and Wildlife Service}, address = {Washington, D.C.}, keywords = {Chinook salmon = Oncorhynchus tshawytscha, Coos River, Coquille River, geographic distribution, habitats, life history information, Rogue River, Siletz River, Siuslaw River, taxonomy, turbidity, Umpqua River, water quality, water temperature, Yaquina River}, url = {https://apps.dtic.mil/sti/pdfs/ADA147263.pdf}, author = {Beauchamp, David A. and Shepard, Michael F. and Pauley, Gilbert B. and U.S. Fish and Wildlife Service. Division of Biological Services, and National Coastal Ecosystems Team (U.S.), and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group,} } @mastersthesis {80316, title = {Paleobotany and Stratigraphy of the Yaquina Flora (Latest Oligocene-Earliest Miocene) of Western Oregon}, year = {1978}, note = {The Yaquina Formation was deposited in Western Oregon at the end of the Oligocene period and the beginning of the Miocene. There were three major depositional events, two in shallow marine environments, and one on land. The later deposits were formed on a delta of the ancestral Yaquina River, and provide a unique look at what life was like on land about 25 million years ago. Although there are a few animal fossils in this Middle Non-Marine Member, the overwhelming majority of fossils are of plants, and they are the subject of this most interesting Master{\textquoteright}s thesis. The fossil record points to a major warming event at the time, and the author finds the Yaquina flora resembles {\textquotedblleft}a marginally subtropical evergreen broad-leaved forest{\textquotedblright} with abundant climbing vines (p.65).}, pages = {192 p.}, school = {University of Maryland}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Botany}, address = {College Park, Md.}, keywords = {botany, general ecosystem description, geology, paleosciences, taxonomy, theses, Yaquina Bay, Yaquina Formation, Yaquina River}, author = {McClammer, James Upsher, Jr.} } @article {30036, title = {Aestabdella Gen. N. (Hirudinea: Piscicolidae) for Johanassonia abditovesiculata Moore 1952 and Ichthyobdella platycephali Ingram 1957.}, journal = {Journal of Parasitology}, volume = {62}, number = {5}, year = {1976}, month = {October_1976}, pages = {p.789-792}, keywords = {Aestabdella species, biological, fishes, geographical distribution, leeches, Lower Yaquina River, new species description, Pacific staghorn sculpin=Leptocottus armatus, parasites, physiology, taxonomy, temporal distribution, Yaquina Bay}, author = {Burreson, Eugene M.} } @article {29646, title = {Occurrence of intergrade brant in Oregon}, journal = {Western Birds}, volume = {5}, year = {1974}, month = {1974}, pages = {91-93}, keywords = {biological, birds, black brant=Branta bernicla nigricans, eelgrass=Zostera marina, new species description, taxonomy, Yaquina Bay}, url = {https://sora.unm.edu/sites/default/files/journals/wb/v05n03/p0091-p0093.pdf}, author = {Hoffman, Wayne and Elliott, William P.} } @article {29681, title = {Some marine and brackish-water Achnanthes from Yaquina estuary, Oregon.}, journal = {Botanica Marina}, volume = {17}, number = {3}, year = {1974}, note = {Slide photographs}, month = {September_1974}, pages = {p.164-175}, keywords = {abundance, Achanthes species, aquatic vegetation, biological, Blind Slough, diatoms, new species description, Oneatta Point, salinity data, South Beach Marina, taxonomy, water temperature data, Yaquina Bay, Yaquina Bay Bridge}, author = {McIntire, C. David and Reimer, Charles W.} } @article {29521, title = {Interstitial diatoms from two tidal flats in Yaquina estuary, Oregon, USA}, journal = {Botanica Marina}, volume = {16}, number = {3}, year = {1973}, note = {Excellent slide photographs}, month = {September_1973}, pages = {p.113-138}, keywords = {aquatic vegetation, biological, community ecology, diatoms, geographical distribution, Idaho Flats, new species description, Sally{\textquoteright}s Bend, sediments, taxonomy, Yaquina Bay}, author = {Riznyk, Raymond Z.} } @mastersthesis {28576, title = {Hydrographic and Trophic Relationships of Hydromedusae in Yaquina Bay, Oregon}, year = {1968}, note = {Line drawings, microphotographs, dichotomous key. Major professor was Herbert F. Frolander. Doctoral dissertation.}, month = {October_1968}, pages = {125 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of General Science}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, biological, cnidarians, community ecology, feeding behavior, hydrology, population biology, salinity data, taxonomy, theses, water temperature data, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/9c67wq01r}, author = {McCormick, Jon M.} } @mastersthesis {28381, title = {Taxonomy of Some Endophytic and Epiphytic Genera of Phaeophyta on the Oregon Coast}, year = {1966}, note = {Major professor was Harry K. Phinney. Masters thesis.}, month = {May_1966}, pages = {65 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Botany and Plant Pathology, Botany}, address = {Corvallis, Or.}, keywords = {aquatic vegetation, Beverly Beach, biological, Boiler Bay, brown algae, Cape Arago, Cape Perpetua, Marine Gardens, new species description, taxonomy, theses, Yaquina Bay, Yaquina Head}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/sj139459g}, author = {O{\textquoteright}Flaherty, Mary L.} } @book {28246, title = {Black Brant: Sea Goose of the Pacific Coast}, year = {1965}, note = {Illustrated. Maps.}, month = {1965}, pages = {142 p.}, publisher = {University of Washington Press}, organization = {University of Washington Press}, address = {Seattle, Wa.}, keywords = {biological, birds, black brant=Branta bernicla nigricans, feeding behavior, geographical distribution, life history information, natural resource management, new species description, population biology, reproductive behavior, taxonomy, temporal distribution, Yaquina Bay}, author = {Einarsen, Arthur S.} } @mastersthesis {28056, title = {Taxonomy of Marine Nematodes Occurring Along Pacific Northwest Coasts}, year = {1961}, note = {Major professor was Harold J. Jensen. Doctoral dissertation. Line drawings.}, month = {1961}, pages = {133 p.}, school = { Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Botany and Plant Pathology}, address = {Corvallis, Or.}, keywords = {biological, geographic distribution, nematodes, taxonomy, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/vx021h165}, author = {Murphy, Donald Guy} } @book {83006, title = {The stoneflies (Plecoptera) of the Pacific Northwest}, series = {Oregon State Monographs. Studies in Entomology }, volume = {no.3}, year = {1959}, note = {Stoneflies are aquatic insects living in cool, well-oxygenated streams. They are sensitive to the presence of pollutants, and their presence is a valuable indicator of good water quality. They are important food sources for fish, particularly trout. This classic guide includes a dichotomous key and numerous illustrations to help identify species. Note: species names may have changed since this publication was written.}, pages = {85 p.}, publisher = {Oregon State University}, organization = {Oregon State University}, chapter = {95 p.}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, general, geographic distribution, insects, life history, stoneflies, taxonomy}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/sf268986j }, author = {Jewett, Stanley Gordon, Jr.} } @mastersthesis {27736, title = {The Flagellate Bodo lens (O. F. Muller) as Food for Larvae of the Native Pacific Coast Oyster}, year = {1951}, note = {Major professor was Roland E. Dimick. Masters thesis. Good photographs.}, month = {June_1951}, pages = {120 p.}, school = {Oregon State College}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fish and Game Management}, address = {Corvallis, Or.}, keywords = {aquaculture, aquatic invertebrates, aquatic vegetation, biological, bivalves, developmental stages, feeding behavior, life history information, molluscs, Olympia oyster=Ostrea lurida (Ostrea conchaphila), physiology, reproductive behavior, taxonomy, theses, Yaquina Bay, Yaquina Bay Fisheries Laboratory}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/9z903422j}, author = {Warren, Charles E.} } @article {27601, title = {The marine algae of Oregon. Part I. Chlorophyta and Phaeophyta}, journal = {Farlowia}, volume = {3}, number = {1}, year = {1947}, note = {Good illustrations}, month = {1947a}, pages = {p.1-65}, keywords = {Agate Beach, aquatic vegetation, biological, brown algae, Coos River estuary, dichotomous key, green algae, physiology, taxonomy, Yaquina Bay, Yaquina Head}, author = {Doty, Maxwell S.} } @article {27606, title = {The marine algae of Oregon. Part II. Rhodophyta}, journal = {Farlowia}, volume = {3}, number = {2}, year = {1947}, note = {Good illustrations}, month = {1947b}, pages = {p.159-215}, keywords = {Agate Beach, aquatic vegetation, biological, Coos River estuary, dichotomous key, physiology, red algae, taxonomy, Yaquina Bay, Yaquina Head}, author = {Doty, Maxwell S.} } @book {27521, title = {Birds of Oregon,}, series = {Oregon State University. Oregon State Monographs. Studies in Zoology}, volume = {no.2}, year = {1940}, note = {Taxonomy update and life zone map in back cover pocket}, month = {March_1940}, pages = {650 p.}, publisher = {Oregon State College}, organization = {Oregon State College}, address = {Corvallis, OR}, keywords = {biological, birds, geographical distribution, life history information, new species description, population biology, reproductive behavior, species list, taxonomy, temporal distribution, terrestrial mammals, terrestrial vegetation}, author = {Gabrielson, Ira N. and Jewett, Stanley G.} }