@article {36491,
	title = {Tidal wetlands of the Yaquina and Alsea River estuaries, Oregon: Geographic Information Systems layer development and recommendations for National Wetlands Inventory revisions},
	volume = {no.2012{\textendash}1038},
	year = {2013},
	note = {{\textquotedblleft}Geographic Information Systems (GIS) layers of current, and likely former, tidal wetlands in two Oregon estuaries were generated by enhancing the 2010 National Wetlands Inventory (NWI) data with expert local field knowledge, Light Detection and Ranging-derived elevations, and 2009 aerial orthophotographs. Data were generated for two purposes: First, to enhance the NWI by recommending revised Cowardin et al. (1979) classifications for certain NWI wetlands within the study area; and second, to generate GIS data for the 1999 Yaquina and Alsea River Basins Estuarine Wetland Site Prioritization study{\textellipsis}.  The GIS products of this project improve the accuracy and utility of the NWI data, and provide useful tools for estuarine resource management.{\textquotedblright} (from the Abstract) Color maps.  Appendix A includes excellent color photographs of wetland sites and plants.  },
	pages = {60 p.},
	institution = {U.S. Geological Survey},
	address = {Reston, Va.},
	keywords = {Alsea Bay, Alsea River, Bain Slough, Boone Slough, Depot Slough, Drift Creek, Eckman Slough, geographic information system, hydrography, Idaho Flats, Lint Slough, maps, McCaffery Slough, Nute Slough, Olalla Slough, Pooles Slough, Risley Creek, salinity, salt marsh, wetland delineation, wetland vegetation, wetlands, Yaquina Bay, Yaquina River},
	url = {https://pubs.usgs.gov/of/2012/1038/pdf/ofr2012-1038.pdf},
	author = {Brophy, Laura S. and Reusser, Deborah A. and Janousek, Christopher N. and Green Point Consulting, and U.S. Geological Survey, and U.S.Environmental Protection Agency,}
}
@article {34286,
	title = {Classification of Regional Patterns of Environmental Drivers and Benthic Habitats in Pacific Northwest Estuaries},
	volume = {EPA 600/R-09/140},
	year = {2009},
	note = {"This report describes a pilot effort at classifying PNW estuaries with regards to landscape attributes and their susceptibility to nutrient enrichment."  Much data is presented. Although the report focuses on seven estuaries (Alsea, Coos Bay, Nestucca, Salmon River, Tillamook Bay, Umpqua and Yaquina), many other estuaries are mentioned, and basic statistical data is given for all PNW estuaries.},
	keywords = {Alsea Bay, climate, Coos Bay, demographics, eelgrass = Zostera marina, Ghost shrimp = Neotrypaea californiensis  (Callianassa californiensis), hydrography, hydrology, Japanese eelgrass = Zostera japonica, Mud shrimp = Upogebia pugettensis, Nestucca  River estuary, nitrate-nitrite, nitrogen, phosphorus, phytoplankton, precipitation, salinity, Salmon River Estuary, sediment data, tidal currents, Tillamook Bay, turbidity, Umpqua River estuary, Yaquina Bay},
	url = {https://tinyurl.com/3rd376k},
	author = {National Health and Environmental Effects Research Laboratory (U.S.). Western Ecology Division,},
	editor = {Lee II, Henry and Brown, Cheryl A.}
}
@article {33796,
	title = {Limiting Factors Assessment and Restoration Plan:  Olalla Creek, Tributary of the Yaquina Estuary},
	year = {2003},
	note = {"Submitted to Midcoast Watersheds Council.""July 20, 2003"},
	pages = {16 p.},
	keywords = {agriculture, Coho salmon = Oncorhynchus kisutch, cutthroat trout = Oncorhynchus clarki, dams, dissolved oxygen, East Olalla Creek, habitat restoration, habitats, human impacts, hydrography, hydrology, marshes, Olalla Creek, Olalla Slough, reservoirs, water quality, water temperature, West Fork Olalla Creek, wetland delineation, Yaquina River},
	url = {https://static1.squarespace.com/static/5626fb1ee4b07be93cf930c1/t/5653c552e4b0072b5f3c07a6/1448330578186/Olalla+Creek.pdf},
	author = {Bio-Surveys LLC, and Sialis Company}
}
@mastersthesis {82972,
	title = {Factors Affecting Coho Salmon Production in Oregon},
	year = {1978},
	note = {In the first chapter, the author investigated whether it was possible to use scale analysis to tell whether or not a coho salmon was of wild or hatchery origin.  It was.  {\textquotedblleft}Eighty-two percent of the hatchery and 89\% of the wild fish were correctly identified.{\textquotedblright} (from the Abstract)  The author discussed the ratio of wild to hatchery salmon found and proper scale analysis techniques.  In the second chapter, the author addressed  the relationship of streamflow and the abundance of coho salmon.  {\textquotedblleft}I found that for catch in the Siletz River and Tillamook Bay, and for the troll fishery, total flows in the stream during the period of residency of the juveniles correlated significantly with number of adults resulting from these smolts; annual flows also correlated significantly.  There was no indication that summer flows determined production of adult fish 2 years later, except for a significant relationship for the Siletz River.{\textquotedblright} (p.68) Major professor was Harry H. Wagner.},
	pages = {100 p.},
	school = {Oregon State University},
	type = {Masters Thesis},
	edition = {M.S.},
	chapter = {Dept. of Fisheries and Wildlife, Fisheries Science},
	address = {Corvallis, Or.},
	keywords = {Alsea River, Coho salmon = Oncorhynchus kisutch, Columbia River, Coquille River, Depoe Bay, flooding, hatcheries, hatchery salmonids, hydrography, hydrology, juvenile fish, life history information, Nehalem River, Port of Garibaldi, Port of Newport, Rogue River estuary, Siletz River, streamflow, Tillamook Bay, Umpqua River, Umpqua River estuary, wild salmonids, Wilson River, Winchester Bay, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/fq977x13n},
	author = {Scarnecchia, Dennis Leslie}
}
@mastersthesis {30106,
	title = {Species-Specific Phytoplankton Production Rates During a Spring Diatom Bloom in Yaquina Bay, Oregon},
	year = {1976},
	note = {Studied population dynamics, particularly phytoplankton succession during a diatom bloom in Yaquina Bay. Drew samples from the dock at the Marine Science Center at five depths and incubated the samples on site. "Species-specific production rates were estimated for 22 consecutive days: 16 April to 7 May 1974. Three taxa, Chaetoceros debilis Cleve, Thalassiosira decipiens (Grun.) Jorg., and unidentified flagellates were responsible for over 65\% of the community biomass and over 85\% of the primary production after 20 April 1974."  Doctoral dissertation. Major professor was Lawerence F. Small. },
	month = {September_1976},
	pages = {229 p.},
	school = {Oregon State University},
	type = {Doctoral Dissertation},
	edition = {Ph. D.},
	chapter = {School of Oceanography},
	address = {Corvallis, Or.},
	keywords = {aquatic vegetation, biological, diatoms, hydrography, light, Marine Science Center Dock, nutrient cycles, physiology, primary production, species list, theses, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/s4655k78n},
	author = {McMurray, Gregory R.}
}
@article {28556,
	title = {Oyster Mortality Study: Annual Progress Report July 1, 1967-March 31, 1968},
	year = {1968},
	note = {"Objectives of Oregon{\textquoteright}s Oyster Mortality study for the year ending March 1969 were similar to those of the first 2 years of the program: (1) to monitor oyster mortality in Yaquina, Tillamook and Coos bays, (2) to collect hydrographic data in Yaquina Bay and (3) to furnish oysters to the University of Washington for comparative histological examination. Additional work was done on the seasonal growth of Pacific oysters, the survival and growth of native oysters from spat and low salinity tolerance of adult native oysters." (Introduction)},
	month = {March_1969},
	pages = {12 p.},
	institution = {Fish Commission of Oregon},
	address = {[Portland, Or.]},
	keywords = {aquatic invertebrates, biological, bivalves, Coos Bay, dissolved oxygen data, Grassy Point, growth, hydrography, hydrology, Idaho Point, molluscs, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Pacific oyster=Crassostrea gigas, physical, River Mile 7, salinity data, The Bend, Tillamook estuary, turbidity data, water temperature data, Yaquina, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/mw22v6241},
	author = {Gibson, Gary and Oregon. Fish Commission and U.S. Fish and Wildlife Service,}
}
@book {28606,
	title = {River Mile Index, Coastal Tributaries, Oregon},
	year = {1968},
	note = {Maps.},
	month = {1968},
	pages = {84 p.},
	publisher = {The Committee},
	organization = {The Committee},
	address = {Vancouver, WA [?]},
	keywords = {geography, hydrography, hydrology, map},
	author = {Pacific Northwest River Basins Commission. Hydrology and Hydraulics Committee,}
}
@article {28441,
	title = {Oyster Mortality Study: Hydrographic Data for Yaquina, Coos, and Tillamook Bays},
	year = {1967},
	note = {Accompanies Oyster Mortality Study, 1966/1967 report. "Tables 1 through 5 give salinity, temperature, dissolved oxygen, turbidity, and pH data for Yaquina Bay while Table 6 gives temperature and salinity for Tillamook and Coos bays.""This information appears in the quarterly and annual reports as either mean values or ranges, but is presented in the following tables as collected. It is hoped that this information can be used for comparison in areas where high oyster mortalities occur." (from the Introduction)},
	month = {December_1967},
	pages = {24 p.},
	institution = {Fish Commission of Oregon},
	address = {[Portland, Or.]},
	keywords = {Blind Slough, Coos River estuary, dissolved oxygen data, Grassy Point, hydrography, hydrology, Marine Science Center Dock, Parker Slough, pH data, physical, River Mile 7, salinity data, The Bend, Tillamook estuary, water temperature data, Yaquina Bay, Yaquina City},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/ms35t9138},
	author = {Gibson, Gary and Snow, C. Dale and Oregon. Fish Commission and U.S. Fish and Wildlife Service,}
}
@article {40826,
	title = {Observations on horseclams of the 1949-50 set in Yaquina Bay},
	volume = {no.21},
	year = {1950},
	note = {This report contains a series of individual reports within it.  The main report continues growth and aging studies on fat gaper clams in Yaquina Bay.  This document also includes a report on other Fish Commission activities on the Coast, a summary of razor clam research, the beginning of a survey of temperatures and salinities in rivers, bays and coastal waters, and a report on crab tagging methodology.},
	pages = {47 p.},
	keywords = {Alsea Bay, aquatic invertebrates, bivalves, chlorine, crustaceans, Dungeness crab =   Metacarcinus magister (Cancer magister), Gaper clam = Tresus capax, hydrography, molluscs, natural resource management, Necanicum River estuary, Netarts Bay, Pacific razor clam = Siliqua patula, salinity, Sally{\textquoteright}s Bend, Siletz Bay, spatial distribution, temporal distribution, Tillamook Bay, water temperature, Yaquina Bay},
	issn = {no.21},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/2b88qd055},
	author = {Tollefson, Roger and Marriage, Lowell D. and Twahy, Donald and Wilkes, Stanley and Woelke, Charles and Oregon. Fish Commission}
}
@article {52311,
	title = {News items from the fisheries districts. Coast districts},
	journal = {Pacific Fisherman},
	volume = {7},
	year = {1909},
	note = {Early fall runs were slow to start due to low water, but salmon quality and abundance were good. {\textquotedblleft}Warden McAllister has made arrangements to build a permanent hatchery on the Coquille River where large numbers of Chinook and Silverside eggs have been taken in the past.  Next year similar stations will be established on the Alsea and the Nehalem.{\textquotedblright}},
	month = {1909, Dec.},
	pages = {p.22},
	keywords = {Alsea River, climate, commercial fisheries {\textendash} salmon, Coquille River, hatcheries, hatchery salmonids., hydrography, Nehalem River, precipitation, streamflow},
	url = {https://digitalcollections.lib.washington.edu/digital/collection/pacfish/id/6457},
	author = {Anonymoous}
}
@article {52096,
	title = {Report of Oregon Master Fish Warden -- 1908. District no.2. Coast streams},
	journal = {Pacific Fisherman},
	volume = {7},
	year = {1909},
	note = {"The conditions on [coastal] ... streams this year were anything but favorable. Owing to the excessive dry weather and continued drought, the streams were all at a very low stage during the greater part of the fishing season; in fact, lower than for years past. This, in  a measure, prevented the salmon from coming in, and in consequence the industry suffered, as did our hatchery work,.. While the total pack this year is practically the same as in 1907, it shows a falling off of 50 per cent on Chinooks.  {\textellipsis}We now have permanent hatcheries on the following streams: South Coos, Siuslaw, Yaquina, Umpqua and Trask. It is my desire to locate also on the Coquille, Alsea, Nehalem, Siletz and Nestucca." Statistics show fry liberated from hatcheries.},
	month = {1909, Feb.},
	pages = {p.35},
	keywords = {Alsea River, climate, commercial fisheries - salmon, Coos Bay, Coquille River, hatcheries, hatchery salmonids, hydrography, Nehalem River, Nestucca River, precipitation, Rogue River, Siletz River, Siuslaw River, streamflow, Tillamook Bay, Umpqua River, Yaquina River},
	url = {https://digitalcollections.lib.washington.edu/digital/collection/pacfish/id/6525},
	author = {McAllister, H. C.}
}
@article {27186,
	title = {Yaquina Bay, Oreg.},
	volume = {2},
	year = {1903},
	note = {Summary of work the Army Corps of Engineers did on the Yaquina from 1866-1900. Lists surveys of 1885/1886, 1892, 1894/1895, and 1899. Lists projects from 1880-1896. Index to where the Yaquina is mentioned in reports of the Chief Engineer.},
	pages = {p.1332-1333},
	institution = {Government Printing Office},
	address = {Washington, D.C.},
	keywords = {economics, historical, hydrography, navigation, Yaquina Bay, Yaquina River},
	url = {https://tinyurl.com/prs4r8zs},
	author = {U.S. Army Corps of Engineers, Portland District}
}
