@article {83113,
	title = {Temporal and habitat differences in the juvenile demersal fish community at a marine-dominated northeast Pacific estuary},
	journal = {Fisheries Research},
	volume = {227},
	number = {105557},
	year = {2020},
	note = {Estuaries provide habitat for many juvenile marine fishes.  A lack of systematic studies of fish communities in estuaries has hampered our understanding of estuaries{\textquoteright} roles in the early life histories of many marine fish. In this article, the authors compare the community structure of juvenile fishes in the Yaquina Estuary for 2008-2009, 2012-2013 and 2016-2017.  Sampling took place around docks and eelgrass beds. {\textquotedblleft}Greater abundances and reduced change in communities over time at eelgrass sites suggests that maintaining these habitats is potentially critical for many estuary-rearing species and temporal changes in these communities highlights the importance of long-term monitoring.{\textquotedblright} (from the Abstract)},
	month = {2020, Jul.},
	pages = {11 p.},
	keywords = {community ecology, eelgrass = Zostera marina, habitats, juvenile fishes, Pacific Decadal Oscillation, Pacific staghorn sculpin = Leptocottus armatus, Rockfish = Sebastes spp., Saddleback gunnel  = Pholis ornata, salinity, temporal distribution, upwelling, water temperature, Yaquina Bay},
	doi = {https://doi.org/10.1016/j.fishres.2020.105557 },
	author = {Schwartzkopf, Brittany D. and Whitman, Alison D. and Lindsley, Amy J. and Heppell, Scott A.}
}
@article {34536,
	title = {Settlement patterns of young-of-the-year rockfish among six Oregon estuaries experiencing different levels of human development},
	journal = {Marine Ecology Progress Series},
	volume = {448},
	year = {2012},
	note = {"The goal of this study was to investigate natural and anthropogenic influences on the estuarine settlement process of rockfishes, with a focus on black rockfish, S. melanops. Trap surveys conducted in 6 Oregon estuaries indicate that young-of-the-year (YOY; age 0) rockfish utilize ..multiple Oregon estuaries from spring through late fall... Catches were higher in the more developed estuaries, suggesting that the continued development of Oregon estuaries may not adversely affect the rockfish settlement process." (from the Abstract) This study is the first documentation of juvenile rockfish in the Nehalem, Siletz, Alsea and Coquille estuaries.},
	pages = {p.143-154},
	keywords = {Alsea Bay, Black rockfish = Sebastes melanops, Coos Bay, Coquille River estuary, habitats, human impacts, industrial development, juvenile fish, Nehalem River estuary, Rockfish = Sebastes spp., Siletz Bay, Yaquina Bay},
	doi = {10.3354/meps09504},
	url = {https://www.int-res.com/articles/meps2011/448/m448p143.pdf},
	author = {Dauble, Alison D. and Heppell, Scott A. and Johansson, Mattias L.}
}
@article {34111,
	title = {The Collaborative Study of Juvenile Rockfish, Cabezon, and Kelp Greenling Habitat Associations  between Morro Bay, California and Newport, Oregon:  Final report to:  Pacific States Marine Fisheries Commission Summarizing Data for 2003, 2004 and 2005},
	year = {2006},
	note = {"California Sea Grant and Pacific Marine Conservation Council Cooperative Research Project."  Various juvenile rockfish, kelp greenling and cabezon were trapped both offshore and in various bays and ports in Oregon and California.  Port Orford, Coos Bay and Newport were the Oregon sites.  Trapping took place between June, 2003 and December, 2005.  The goal was to identify the habitat associated with each species.  The most abundant trapped juvenile species in Yaquina Bay was the black rockfish (181), followed by kelp greenling (69), copper rockfish (58) and cabezon (27). Yaquina Bay rockfish and cabezon preferred pilings and mud sites in deeper water in channels near eelgrass. Yaquina Bay kelp greenling preferred mud and sand sites, with over 90\% found near piling. },
	pages = {13 p.},
	keywords = {Black rockfish = Sebastes melanops, cabezon = Scorpaenichthys marmoratus, Coos Bay, Copper rockfish = Sebastes caurinus, geographic distribution, habitats, juvenile fish, kelp greenling=Hexagrammos decagrammus, Rockfish = Sebastes spp., Yaquina Bay},
	url = {https://escholarship.org/uc/item/35m8147x},
	author = {Schlosser, Susan and Bloeser, Jennifer}
}
@inbook {33876,
	title = {Yaquina Bay, Oregon},
	booktitle = {Where the River Meets the Sea:  Case Studies of Pacific Northwest Estuaries},
	year = {2003},
	note = {Excellent overview of the area at the turn of the century. Demographics, economy, recreation, hydrology, weather, indicator species, seabirds, fishing, oyster production. Maps, good charts, comparisons with other estuaries.},
	pages = {p.83-105},
	publisher = {Pacific Northwest Coastal Ecosystems Regional Study},
	organization = {Pacific Northwest Coastal Ecosystems Regional Study},
	address = {Seattle, Wa.},
	keywords = {Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, Coos Bay, Dungeness crab = Metacarcinus magister (Cancer magister), Pacific oyster = Crassostrea gigas, Pink shrimp = Pandalas jordani, Rockfish = Sebastes spp., Yaquina Bay},
	editor = {Litle, Kate and Parrish, Julia K.}
}
@article {33516,
	title = {Draft Oregon Coastal Juvenile Rockfish Study},
	year = {2000},
	note = {This paper describes a pilot project to develop a recruitment index for rockfish. Rockfish bear live young in the winter. "The larvae live in the plankton for three to five months before settling to the benthos, usually near some sort of structure."  Juvenile rockfish live in estuaries before migrating to the ocean. For this study, beach seines were conducted in the summer of 2000.  Boiler Bay had the most rockfish, followed by Yaquiina Bay. Shiner perch were the most abundant juvenile fish (5610) in Yaquina Bay. Black rockfish were the most abundant rockfish (402), and some copper rockfish (18) were also caught. },
	pages = {18 p.},
	institution = {Oregon Dept. of Fish and Wildlife. Marine Resources Division. Estuarine Habitat},
	keywords = {Black rockfish = Sebastes melanops, Boiler Bay, life history information, natural resource management, Rockfish = Sebastes spp., Salmon River Estuary, Seal Rock, Shiner perch = Cymatogaster aggregate, species list, Yaquina Bay, Yaquina River},
	url = {https://ir.library.oregonstate.edu/concern/defaults/p2676w099},
	author = {Appy, Marcus and Collson, P. J.}
}
@article {76401,
	title = {Roles of behavioral and physical factors in larval and juvenile fish recruitment to estuarine nursery areas},
	journal = {Larval Fish and Shellfish Transport through Inlets},
	volume = {no.3},
	year = {1988},
	note = {Many marine fish spend parts of their early lives in estuaries.  This paper examines those species that spawn at sea and later enter estuaries {\textquotedblleft}as late larvae or early juveniles.{\textquotedblright} (p.51) Which physical and behavioral factors enable these fish to find the estuary and stay there? This excellent review includes a list of offshore, coastal and bay species found in Yaquina Bay in particular developmental stages. },
	pages = {p.51-67},
	keywords = {Bay goby = Lepidogobus Lepidus, behavior, buffalo sculpin = Enophrys bison, English sole = Parophrys vetulus, juvenile fish, life history information, Pacific herring =  Clupea pallasi, Pacific staghorn sculpin = Leptocottus armatus, Red Irish lord = Hemilepdotus hemilepdotus, Rockfish = Sebastes spp., Rosylip sculpin  = Ascelichthys rhodorus, sand sole = Psettichthys melanostictus, Sharpnose sculpin = Clinocottus acuticeps, Smelt family = Osmeridae, Yaquina Bay},
	author = {Boehlert, George W. and Mundy, Bruce C.}
}
@article {30241,
	title = {Two new species of <i>Malmiana</i> (Hirudinea: Piscicolidae) from Oregon coastal waters},
	journal = {Journal of Parasitology},
	volume = {63},
	number = {1},
	year = {1977},
	note = {"Malmiana virida sp. n., parasitic on buffalo sculpins, Enophrys bison, in Yaquina Bay estuary, and Malmiana diminuta sp. n., a parasite of rockfishes, Sebastes spp., and cabezon, Scorpaenichthys marmoratus, are described." (from the Abstract). Note: initial species names were not the final approved names for these new species. For more information, see World Register of Marine Species ( https://www.marinespecies.org/ ).},
	pages = {p.130-136},
	keywords = {annelids, buffalo sculpin = Enophrys bison, cabezon = Scorpaenichthys marmoratus, fish, Janusion diminuta (Malmiana diminuta), Janusion virida (Malmiana virida), new species description, parasites, Rockfish = Sebastes spp.},
	author = {Burreson, E. M.}
}
@article {76431,
	title = {Naterlin purchases control of the Newport Fish Co.},
	journal = {Pacific Fisherman},
	volume = {29},
	year = {1931},
	note = {In 1931, Andreq J. Naterlin bought out Crad Meredith{\textquoteright}s interest in the Newport Fish Company. The U.S. dredge {\textquotedblleft}Savannah{\textquotedblright} was dredging the Yaquina bar in the summer of 1931, improving conditions,  and optimists were hoping that the Depression would come to a quick end.  The article discusses the officers of the company and its business focus, as well as current market and supply conditions.  It includes a photograph of Antone Naterlin, the President of the company, as well as a view of the Newport watrfront showing the Newport Fish Company building.},
	month = {1931, July},
	pages = {p.65},
	keywords = {commercial fisheries -- groundfish, industrial development, Lingcod = Ophiodon elongates, Newport Fish Company, Pacific halibut = Hippoglossus stenolepis, Rockfish = Sebastes spp., Shad = Alosa sapidissima, Yaquina Bay},
	author = {Anonymous}
}
@article {76396,
	title = {Newport fillets prove popular},
	journal = {Pacific Fisherman},
	volume = {27},
	year = {1929},
	note = {Brief news article about the popularity of fresh and frozen fish processed by the Newport Fish Company. {\textquotedblleft}In addition to its fresh fish business, the Newport company mild cures some salmon and handles halibut, although this fishery was curtailed somewhat during the past season by shortage of bait. Yaquina Bay has been closed to shad fishing for some years, but is now open and it is expected will yield substantial quantities of this fish during the spring months.{\textquotedblright}  The article includes a b+w photograph of company officers Andrew J. Naterlin and Crad Meredith displaying frozen fillets.},
	month = {1929, Dec.},
	pages = {p.45},
	keywords = {commercial fisheries -- groundfish, industrial development, Lingcod = Ophiodon elongates, Newport Fish Company, Pacific halibut = Hippoglossus stenolepis, Rockfish = Sebastes spp., Shad = Alosa sapidissima, Yaquina Bay},
	author = {Anonymoous}
}
