@article {83192,
	title = {Automatic Identification System (AIS) data case study: vessel traffic through the Yaquina Bay breakwater at Newport, Oregon},
	volume = {No.23-1},
	year = {2023},
	note = {Although there are two potential openings in the breakwater on the north of Yaquina Bay, there is no approved Federal channel that passes through the breakwater.  There is interest in a possible passage through the breakwater, and the Portland District of the Army Corps of Engineers is interested in exploring this possibility. {\textquotedblleft}[S]taff were interested in historical vessel transits, with a special focus on isolating transits for the largest (i.e., longest) vessels, identified as vessels 80 feet or longer, currently utilizing the area inside the breakwater. The Automatic Identification System Analysis Package (AISAP) software . . . was used to analyze vessel traffic{\textquotedblright} (p.1).  An interesting look at the movement of large vessels in the bay.},
	month = {2023, Mar.},
	pages = {8 p.},
	institution = {U.S. Army Corps of Engineers. Engineer Research and Development Center},
	address = {Vicksburg, MS},
	keywords = {breakwater, harbors, navigation, ports, Sally{\textquoteright}s Bend, Yaquina Bay},
	url = {https://erdc-library.erdc.dren.mil/jspui/handle/11681/46549 },
	author = {Kress, Marin M.}
}
@mastersthesis {77276,
	title = {The Effects of Artificial Structures on Estuarine Infaunal Communities and Offshore Biofouling Communities},
	year = {2016},
	note = {One promising source of renewable energy now being studied on the Oregon Coast is wave energy.  The artificial structures used to generate wave energy will necessarily affect the marine environment and the plants and animals that live near them.  In this thesis, the author investigates {\textquotedblleft}the spatial effect of artificial structures on the surrounding infaunal communities in an estuarine environment after the artificial structures have been in the water for 8 years.{\textquotedblright}  The artificial structures were deployed in soft sediments in Yaquina Bay.  The author also sought {\textquotedblleft}[t]o identify and quantify the biofouling communities present on offshore surface and bottom artificial structures after a period of two years.{\textquotedblright}  Good discussion of issues, possible applications of this research and areas where more research is needed. The major professor was Sarah K. Henkel.},
	pages = {79 p,},
	school = {Oregon State University},
	type = {Masters Thesis},
	edition = {M.S.},
	chapter = {College of Earth, Ocean and Atmospheric Sciences. Marine Resource Management Program},
	address = {Corvallis, Or.},
	keywords = {algae, aquatic invertebrates, biofouling, breakwater, habitats, human impacts, Idaho Flats, industrial development, sediments, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/8g84mp74n},
	author = {Mendoza, Maritza}
}
@article {34016,
	title = {Yaquina Bay, Oregon Geographic Response Plan (GRP)},
	year = {2005},
	note = {"1 September 2005."  This is an emergency response plan for an oil spill in or near Yaquina Bay.  "This plan prioritizes resources to be protected and allows for immediate and proper action. By using this plan, the first responders to a spill can avoid the initial confusion that generally accompanies any spill." (p.iv)},
	pages = {60 p.},
	address = {[Portland, Or.]},
	keywords = {Arnold Creek, Blind Slough, Boone Slough, breakwater, Butler Bridge, Coquille Point, Depot Slough, Embarcadero Marina, Flesher Slough, Hatfield Marine Science Center, hazardous waste, Johnson Slough, McCaffery Slough, McLean Point, Mill Creek, Nute Slough, oil spills, Olalla Slough, Oregon Oyster Farm, Parker Slough, Poole Slough, South Beach Marina, Toledo, Weiser Point, Yaquina Bay, Yaquina Bay Bridge},
	url = {https://www.oregon.gov/deq/FilterDocs/YaquinaBayGeoResponsePlan.pdf},
	author = {Northwest Area Committees,}
}
@conference {33626,
	title = {Secondary production in coastal estuaries: Dungess crab and English sole as bioindicators},
	booktitle = {Pacific Northwest Coastal Ecosystems Regional Study Annual Report},
	series = {PNCERS Annual Report 2001},
	year = {2001},
	note = {This aspect of the PNCERS program is intended to provide a sense of spatial,temporal distribution and abundance of certain macrofauna in Oregon and Washington coastal estuaries.},
	month = {2002},
	pages = {p.79-90},
	publisher = {Coastal Ocean Programs, NOAA},
	organization = {Coastal Ocean Programs, NOAA},
	keywords = {abundance, biological, breakwater, dungeness crab=Metacarcinus magister (Cancer magister), English sole=Pleuronectes vetulus, Grassy Point, habitats, The Bend, Yaquina Bay, Yaquina Bay Bar},
	url = {https://ir.library.oregonstate.edu/concern/defaults/x346d5217},
	author = {Armstrong, David A. and Gunderson, Donald and Rooper, Chris},
	editor = {Parrish, J.K. and Litle, Kate}
}
@article {33101,
	title = {Newport North Marina, Yaquina Bay, Oregon, design for wave protection:  coastal model investigation},
	volume = {no.96-2},
	year = {1996},
	note = {"January 1996" Photographs, charts.},
	pages = {115 p.},
	keywords = {breakwater, Port of Newport, wave data, wave height, Yaquina Bay},
	url = {https://apps.dtic.mil/dtic/tr/fulltext/u2/a304942.pdf},
	author = {Bottin, Jr., Robert R. and Briggs, Michael Jeffrey and United States. Army. Corps of Engineers. Portland District, and U.S. Army Engineer Waterways Experiment Station, and U.S. Coastal Engineering Research Center,}
}
@article {33181,
	title = {North Marina Bbreakwater:  Draft Detailed Project Report and Environmental Assessment, Section 107},
	year = {1996},
	month = {February_1996},
	institution = {U.S. Army Corps of Engineers, Portland District},
	address = {Portland, Or.},
	keywords = {breakwater, catch statistics, commercial fisheries, dredging, economics, environmental policy and law, general, historical, physical modifications, Yaquina Bay},
	author = {U.S. Army. Corps of Engineers,}
}
@article {33186,
	title = {Yaquina Bay, Lincoln Co., OR: North Marina Breakwater; Preliminary Evaluation - Foundation Condition Study for Major Maintenance Project},
	year = {1996},
	month = {1996},
	pages = {3 p.},
	institution = {U.S. Army Corps of Engineers.  Portland District},
	address = {Portland, Or.},
	keywords = {breakwater, physical, sediment data, sediments},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/wh246s616},
	author = {U.S. Army. Corps of Engineers.  Portland District,}
}
@booklet {33056,
	title = {Yaquina Bay  and South Beach Marina Sediment Sampling Evaluations},
	year = {1995},
	month = {August_1995},
	pages = {10 p.},
	keywords = {breakwater, chemical, dredging, McLean Point, physical, sediment data, South Beach Marina, Yaquina Bay Bar, Yaquina Bay Bridge},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/nz806017m},
	author = {U.S. Department of the Army.  Portland District,}
}
@article {32501,
	title = {Status of Stocks: Bay Clams, Bait Shrimp},
	year = {1990},
	note = {Internal discussion paper. Numerous statistical tables and charts.},
	month = {March, 1990},
	pages = {20 p.},
	keywords = {abundance, age composition, Alsea Bay, aquatic invertebrates, bivalves, breakwater, Butter clam = Saxidomus giganteus, catch statistics, Cockle clam = Clinocardium nuttallii, commercial fisheries - shellfish, Coos Bay, Coquille Point, Gaper clam = Tresus capax, Ghost shrimp = Neotrypaea californiensis  (Callianassa californiensis), Idaho Point, life history information, Littleneck clam = Leukoma staminea, Manila clam = Venerupis japonica, molluscs, Mud shrimp = Upogebia pugettensis, natural resource management, Netarts Bay, population biology, Sally{\textquoteright}s Bend, sediments, Siuslaw Bay, size composition, Softshell clam = Mya arenaria, statistical analysis, Tillamook Bay, Yaquina Bay, Yaquina Bay Bridge},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/3484zh72x},
	author = {Oregon. Dept. of Fish and Wildlife. Marine Region,}
}
@article {32276,
	title = {Case histories of corps breakwater and jetty structures.  Report 6, North Pacific division},
	year = {1988},
	month = {November_1988},
	pages = {178 p.},
	institution = {U.S. Army. Corps of Engineers. Repair, Evaluation, Maintenance, and Rehabilitation Research Program},
	address = {Vicksburg, MS},
	keywords = {breakwater, Chetco River estuary, coastal hazards, Columbia River estuary, Coos River estuary, Coquille River estuary, Depoe Bay, human impacts, Nehalem River estuary, North Jetty, physical, physical modifications, Port Orford, Rogue River estuary, Siuslaw River estuary, South Jetty, Tillamook estuary, Umpqua River estuary, Yaquina Bay},
	url = {https://archive.org/details/casehistoriesofc00ward},
	author = {Ward, Donald L and U.S. Army. Corps of Engineers. Waterways Experiment Station ,}
}
@article {24696,
	title = {Clam studies: 1984},
	volume = {no.85-8},
	year = {1985},
	note = {"This report summarizes the results of our bay clam studies in 1984. Activities summarized include monitoring of the recreational and commercial clam fisheries, hatchery stock enhancement studies, natural recruitment studies, and miscellaneous other projects." (Introduction)},
	pages = {56 p.},
	institution = {Oregon Department of Fish and Wildlife},
	address = {Newport, OR},
	keywords = {Alsea Bay, Bay Ocean Flat, Bayshore, bivalves, Bolin Island, breakwater, Butter clam = Saxidomus giganteus, Cape Lookout Sand Spit, Charleston Flat, Charleston Triangle, Clam Island, Cockle clam = Clinocardium nuttallii, commercial fisheries - shellfish, Coos Bay, Coquille Point, Coquille River estuary, Criteser{\textquoteright}s Moorage, Empire Flat, Gaper clam = Tresus capax, Garibaldi Flat, Hanson{\textquoteright}s Marina, Happy Camp, Idaho Point, Little Nestucca Flat, Littleneck clam = Leukoma staminea, Manila clam = Venerupis japonica, molluscs, Nehalem Bay, Nestucca Bay, Netarts Bay, North Fork Flat, North Shore, North Spit, Pigeon Point, recreational fisheries - shellfish, Sitka Flat, Siuslaw Bay, Softshell clam = Mya arenaria, statistics, Tillamook Bay, Umpqua River estuary, Yaquina Bay, Yaquina Bay Bridge},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/t722h9759},
	author = {Gaumer, Thomas F. and Oregon. Dept. of Fish and Wildlife,}
}
@article {14421,
	title = {Clam studies: 1983},
	volume = {no.84-14},
	year = {1984},
	note = {"This report summarizes the results of our bay clam studies in 1983. Activities summarized include monitoring of the recreational and commercial clam fisheries, hatchery stock enhancement studies, natural recruitment studies, and miscellaneous other projects." (Introduction)},
	month = {1984},
	institution = {Oregon Department of Fish and Wildlife},
	address = {Newport, OR},
	keywords = {Alsea Bay, Bay Ocean Flat, Bayshore, bivalves, breakwater, Butter clam = Saxidomus giganteus, Cape Lookout Sand Spit, Charleston Flat, Charleston Triangle, Clam Island, Cockle clam = Clinocardium nuttallii, commercial fisheries - shellfish, Coos Bay, Coquille Point, Coquille River estuary, Criteser{\textquoteright}s Moorage, eelgrass = Zostera marina, Empire Flat, Gaper clam = Tresus capax, Garibaldi Flat, Hanson{\textquoteright}s Marina, Happy Camp, Idaho Point, Little Nestucca Flat, Littleneck clam = Leukoma staminea, Manila clam = Venerupis japonica, molluscs, Nehalem Bay, Nestucca Bay, Netarts Bay, North Fork Flat, North Shore, North Spit, Pigeon Point, recreational fisheries - shellfish, Sitka Flat, Siuslaw Bay, Softshell clam = Mya arenaria, statistics, Tillamook Bay, Umpqua River estuary, Yaquina Bay, Yaquina Bay Bridge},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/12579s92p},
	author = {Gaumer, Thomas F. and Oregon Department of Fish and Wildlife,}
}
@article {30661,
	title = {Benthic Macrofauna, Sediment and Water Quality Near Seafood Cannery Outfalls in Yaquina Bay, Oregon},
	year = {1978},
	note = {"Seafood canneries in lower Yaquina Ray, Oregon process shrimp (Pandalus jordani), Dungeness crab (Cancer magister), a variety of bottom fish and several salmon species. The shrimp wastes are screened and discharged directly into the Ray beneath the cannery docks. During the shrimp processing season about 3.8 million liters of wastes are discharged daily. We conducted a survey of the macrohenthos, sediment, and water quality in Yaquina Bay in May 1978. The effects of the cannery wastes were restricted to the immediate vicinity of the cannery docks. The effluent plume was quite turbid and had high nutrient concentrations. Because of its initial low salinity it was restricted to the surface layer where it mixed with estuarine water and was rapidly dispersed by strong tidal currents. Dissolved oxygen concentrations were 7.0 mg/1 or greater in the plume. The strong currents and screening treatment of the effluent minimized deposition of solids on the sea bed. Bottom water quality was not adversely affected." (from the Abstract) Includes species list.},
	pages = {55 p.},
	institution = {Marine and Freshwater Ecology Branch, Corvallis Environmental Research Laboratory, Environmental Protection Agency},
	address = {Newport, Or.},
	keywords = {biological, breakwater, Coast Guard Station, Oregon State University Hatfield Marine Science Center, Port of Newport Dock 1, Port of Newport Dock 3, seafood processing, sediments, species list, water quality data},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/c534fp83q},
	author = {Swartz, Richard C. and Schults, Donald W. and DeBen, Waldemar A. and Cole, Faith A.}
}
@article {30426,
	title = {Angler{\textquoteright}s Guide to the United States Pacific Coast: Marine Fish, Fishing Grounds \& Facilities},
	year = {1977},
	note = {Thorough information and charts regarding recreational fisheries given for entire coast},
	month = {November_1977},
	pages = {139 p.},
	institution = {National Marine Fisheries Service},
	address = {Seattle, WA},
	keywords = {abundance, breakwater, Coquille Point, general, geographical distribution, Idaho Point, King Slough, McLean Point, Oneatta Point, recreational fisheries - groundfish, salmon, shellfish, South Beach Marina, Yaquina Bay, Yaquina City},
	author = {James L Squire Jr. and Smith, Susan E. and National Marine Fisheries Service}
}
@proceedings {29771,
	title = {Comparison of species diversity and faunal homogeneity indices as criteria of change in biological communities},
	year = {1974},
	note = {EPA-600-4-74-004. Surveyed demersal fish and epibenthic crustaceans twice monthly at four stations in Yaquina Bay, March 1967-Feb. 1968.},
	month = {[1974]},
	pages = {p.317-334},
	publisher = {U. S. Environmental Protection Agency},
	keywords = {biological, blacktail bay shrimp = Crangon nigricauda, breakwater, buffalo sculpin = Enophrys bison, Buoy 15, community ecology, Coquille Point, Dungeness crab = Metacarcinus magister (Cancer magister), English sole = Pleuronectes vetulus, fishes, geographical distribution, Main channel, methodology, pile perch = Rhacochilus vacca, Snake prickleback = Lumpenus sagitta, starry flounde r= Platichthys stellatus, temporal distribution, Weiser Point, west of Yaquina Bay Bridge, Yaquina Bay, Yaquina City},
	url = {https://nepis.epa.gov/Exe/ZyPURL.cgi?Dockey=91019N3T.TXT},
	author = {Swartz, Richard C. and DeBen, Waldemar A. and McErlean, A. J.},
	editor = {Verner, S. S.}
}
@article {29336,
	title = {Feasibility of Artificial Clam Beds},
	year = {1972},
	note = {This paper discusses the accidental creation of two clam beds by the U.S. Army Corps of Engineers in Yaquina Bay in 1948 and in Coos Bay around 1950 through dumping of enough dredging spoil to create small islands in the river. The islands were subsequently colonized by clams. The suggestion is to test using dredging spoil to create more clam beds.  "Fishery biologists are not in complete agreement on the desirability of such a project. From the viewpoint of shellfish biologists, this is a justifiable procedure. However, biologists working with finfish such as shad and striped bass are convinced that these areas are more valuable as feeding grounds for these species." (p.6)  Includes maps showing the locations of the man-made clam beds.},
	month = {1972, Apr. 19},
	pages = {8 p.},
	institution = {Fish Commission of Oregon},
	keywords = {breakwater, Coos Bay, eelgrass = Zostera marina, Gaper clam = Tresus capax, Pigeon Point, recreational fisheries - shellfish, salinity, sediments, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/hd76s084w},
	author = {Snow, C. Dale and Oregon. Fish Commission. Management and Research Division,}
}
@article {28846,
	title = {Shellfish investigations.  Progress report $\#$39.  April 1, 1967 - March 31, 1970},
	volume = {no.39},
	year = {1970},
	note = {This document is a report on shellfish investigations from April 1967 to March 1970. It includes the results of bay clam surveys for Yaquina, Siuslaw, and Umpqua bays, and harvest numbers for razor clams in both personal-use and commercial fisheries. This report also contains a summary of beach surveys for six razor clam beaches, and the results of two new methods of ragging razor clams. In crab work, the report discusses problems with tagging, condition sampling, and regulatory issues. The report discusses rearing of red abalone, federal programs for oysters, and concludes with a summary of work with intertidal nonfood animals.},
	month = {October_1970},
	pages = {30 p.},
	institution = {[Fish Commission of Oregon]},
	keywords = {abundance, age composition, Alsea River estuary, aquaculture, aquatic invertebrates, biological, bivalves, breakwater, commercial fisheries - shellfish, Coos River estuary, crustaceans, decapods, fat gaper=Tresus capax, growth, Idaho Point, kumamoto oyster=Crassostrea sikamea, methodology, molluscs, Netarts estuary, Nuttall cockle=Clinocardium nuttallii, Oregon Fish Commission Research Laboratory, Pacific oyster=Crassostrea gigas, population biology, recreational fisheries - shellfish, Sally{\textquoteright}s Bend, Siuslaw River estuary, Umpqua River estuary, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/8p58pd77t},
	author = {Snow, C. Dale and Gaumer, Tom and Demory, Darrel and Neilsen, John R. and Osis, Laimons and Phibbs, Duane and Gibson, Gary}
}
@article {28486,
	title = {Shellfish investigations:  April 1, 1966 - March 31, 1967},
	volume = {no.38},
	year = {1967},
	note = {This document is a report on shellfish investigations from April 1966-March 1967. It includes the bay clam abundance/age growth surveys, with emphasis on the Yaquina, Umpqua, and Coos Bays. The study on life history for the cockle clam is discussed. The report goes over razor clams harvest numbers and age composition. It includes information for the cooperative cruise with California to study crabs, as well as condition sampling and commercial production numbers for crabs. The report concludes with an update on the intertidal animals and the issuing of collection permits.  October, 1967.},
	pages = {18 p.},
	institution = {[Fish Commission of Oregon]},
	keywords = {abundance, age composition, aquaculture, aquatic invertebrates, biological, bivalves, breakwater, commercial fisheries - shellfish, Coos River estuary, crustaceans, decapods, dredging, edible oyster=Ostrea edulis, fat gaper=Tresus capax, growth, human impacts, Idaho Point, life history information, molluscs, Nehalem River estuary, Nestucca River estuary, Netarts estuary, Nuttall cockle=Clinocardium nuttallii, Oregon Fish Commission Research Laboratory, Pacific littleneck=Leukoma staminea, physical modifications, population biology, recreational fisheries - shellfish, salinity data, Sally{\textquoteright}s Bend, Siuslaw River estuary, softshell clam=Mya arenaria, Umpqua River estuary, water pollution, water temperature data, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/hq37vp30d},
	author = {Snow, C. Dale and Reed, Paul H. and Demory, Darrel and Neilsen, John R. and DeBen, Waldemar and Kaiser, Alan and Osis, Laimons and Oregon. Fish Commission}
}
@article {27591,
	title = {Letter from the Secretary of War transmitting to the Chairman of the Committee on Commerce, United States Senate pursuant to a resolution of the Committee, a review of reports of Yaquina Bay, River, and Harbor, Oregon},
	volume = {79th Congress, 2nd Session. Senate Document no.246},
	year = {1946},
	note = {Accompanied by 1 map. July 23, 1946},
	pages = {16 p.},
	institution = {Government Printing Office},
	address = {Washington, D.C.},
	keywords = {breakwater, dredging, physical, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/tt44pn30j},
	author = {U.S. Congress. Senate,}
}
