@article {83144,
	title = {Sixth Oregon Climate Assessment},
	year = {2023},
	note = {{\textquotedblleft}This sixth Oregon Climate Assessment builds on the previous assessments by continuing to evaluate past and projected future changes in Oregon{\textquoteright}s climate and water supply. Like the fifth assessment, it is structured with the goal of supporting the state{\textquoteright}s mitigation planning for natural hazards and implementation of the 2021 Oregon Climate Change Adaptation Framework.{\textquotedblright} (from the Abstract)},
	pages = {249 p.},
	institution = {Oregon State University. Oregon Climate Change Research Institute },
	address = {Corvallis, Or.},
	keywords = {agriculture, air temperature, climate, climate change, coastal hazards, depleted populations, economics, fish, forest fires, human impact, hydrology, introduced species, phenology, precipitation, sea level, snowpack, terrestrial vegetation, water temperature, wildlife},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/gt54kw197 },
	author = {Fleishman, Erica and Oregon Climate Change Research Institute.,,}
}
@article {83143,
	title = {Fifth Oregon Climate Assessment},
	year = {2021},
	note = {{\textquotedblleft}Consistent with its charge under Oregon House Bill 3543, the Oregon Climate Change Research Institute (OCCRI) conducts a biennial assessment of the state of climate change science, including biological, physical, and social science, as it relates to Oregon and the likely effects of climate change on Oregon. . . This Assessment is structured with the goal of serving as a resource for the state{\textquoteright}s mitigation planning for natural hazards and implementation of the 2021 Oregon Climate Change Adaptation Framework.{\textquotedblright} (from the Abstract)},
	pages = {93 p.},
	institution = {Oregon State University. Oregon Climate Change Research Institute },
	address = {Corvallis, Or.},
	keywords = {agriculture, air temperature, climate, climate change, coastal hazards, depleted populations, economics, fish, forest fires, human impact, hydrology, introduced species, phenology, precipitation, sea level, snowpack, terrestrial vegetation, water temperature, wildlife},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/pz50h457p },
	author = {Dalton, Meghan M. and Fleishman, Erica and Oregon Climate Change Research Institute.,,}
}
@article {83142,
	title = {Future Climate Projections. Lincoln County},
	year = {2020},
	note = {This is a report for the Oregon Department of Land Conservation and Development. In a complex environment, multiple factors influence the effects of climate change. Nevertheless, {\textquotedblleft}Climate change is expected to increase the occurrence of most climate---related risks considered in this report. The risks of heat waves are projected to increase with very high confidence due to strong evidence in published literature, model consensus, and robust theoretical principles for continued increasing temperatures.{\textquotedblright} (from the Abstract)  Those who care about these issues will find this report of great interest. We learn, for example, that the Yaquina River Estuary will probably lose wetlands, while the Yachats River Estuary will gain wetlands due to climate change.},
	pages = {60 p.},
	institution = {Oregon State University. Oregon Climate Change Research Institute},
	address = {Corvallis, Or.},
	keywords = {air temperature, Alsea River, Beaver Creek, climate, climate change, coastal hazards, depleted populations, Depoe Bay, economics, erosion, fish, floods, forest fires, human impact, hydrology, introduced species, precipitation, Salmon River, sea level, Siletz River, terrestrial vegetation, water temperature, wetland delineation, wildlife, Yachats River, Yaquina River},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/z603r6081 },
	author = {Dalton, Meghan M.}
}
@article {82911,
	title = {Evidence for regional-scale controls on eelgrass (<i>Zostera marina</i>) and mesograzer community structure in upwelling-influenced estuaries},
	journal = {Limnology and Oceanography},
	volume = {64},
	number = {3},
	year = {2019},
	note = {{\textquotedblleft}In estuaries of the U.S. Pacific Northwest coast, eelgrass (Zostera marina ) ecosystems are exposed to latitudinally varying oceanographic inputs in the form of ocean upwelling. Previous research suggests that ocean upwelling is critical to eelgrass and ulvoid macroalgae abundance, but the degree to which secondary producers are controlled by processes at regional vs. local scales is unknown. Here, we consider the relationships among primary producers (eelgrass, ulvoid macroalgae, and epiphytic microalgae), epifaunal mesograzers, and mesopredator fish within and across three Oregon, U.S.A., estuaries during a spring{\textendash}summer season to examine the role of multiple scales in structuring these communities.{\textquotedblright} (from the Abstract)  Suppplementary material in a separate file accompanies this article.},
	month = {2019, May},
	pages = {p.1120-1134},
	keywords = {algae, community ecology, Coos Bay, eelgrass = Zostera marina, eutrophication, fish, Grazing, Netarts Bay, primary production, Ulva spp., upwelling, Yaquina Bay},
	doi = {https://doi.org/10.1002/lno.11102 },
	author = {Hayduk, Jennifer L. and Hacker, Sally D. and Henderson, Jeremy S. and Tomas, Fiona}
}
@article {83173,
	title = {The Yaquina estuary and Its inhabitants},
	volume = {no.19-001},
	year = {2019},
	note = {This field guide covers the flora and fauna you may see along the one-mile Yaquina Estuary nature trail. The trailhead is on the east side of the Visitor Center at the Hatfield Marine Science Center in Newport, Oregon. It was originally published 1999; revised 2019.},
	pages = {20 p.},
	institution = {Oregon State University. Sea Grant College Program},
	address = {Corvallis, Or.},
	keywords = {aquatic invertebrates, birds, crustaceans, eelgrass = Zostera marina, Field guide, fish, habitats, Hatfield Marine Science Center, mollusks, salt marsh, terrestrial plants, tidelands, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/defaults/0v8386491 },
	author = {Gleason, Barbara}
}
@article {80306,
	title = {Hatfield Marine Science Center Dynamic Revetment Project DSL permit $\#$ 45455-FP: Final Monitoring Report February, 2016},
	year = {2016},
	note = {This is the fifth and final document in a series of five annual reports concerning control of severe erosion along Yaquina Bay next to the Hatfield Marine Science Center. Parts of the shoreline were stabilized in 2007 and 2011.  Severe erosion in the unmodified Reference area led to extension of the dynamic revetment into the Reference area in 2015.  The 2015 work {\textquotedblleft}has largely stabilized shoreline erosion within the project area{\textquotedblright} (p.32). Concerns remain about the need for more gravel and high-water events, including king tides.  Aerial photograph, color photographs.},
	pages = {51 p.},
	institution = {Oregon State University. Hatfield Marine Science Center,},
	address = {Newport, Or.},
	keywords = {amphipods, aquatic invertebrates, beaches, benthos, coastal hazards, erosion, fish, Hatfield Marine Science Center, Pacific staghorn sculpin = Leptocottus armatus, physical, Shiner perch = Cymatogaster aggregate, species list, terrestrial vegetation, wave height data, Whitebait smelt = Allosmerus elongates, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/pn89d710t},
	author = {Cowen, Robert and Nelson, Walt and Arbuckle, Scarlett and Folger, Christina and Allan, Jonathan and Heppell Laboratory,}
}
@article {80301,
	title = {Hatfield Marine Science Center Dynamic Revetment Project DSL permit $\#$ 45455-FP: Monitoring Report, February 2015},
	year = {2015},
	note = {This is the fourth in a series of five annual reports concerning control of erosion along Yaquina Bay next to the Hatfield Marine Science Center. Parts of the shoreline were stabilized in 2007 and 2011.  Before more dynamic revetments will be permitted, a five-year study of nearby unmodified shorelines is required.  {\textquotedblleft}Monitoring of beach profiles indicated that as of January 2015, the 2011 Dynamic Revetment Project (DRP) has generally successfully stabilized the shoreline in the project area.  Beach profile data also indicated that the 2007 DRP continued to be successful in stabilizing further retreat of the shoreline.  . .  Rapid erosion has continued in the adjacent Reference beach area and over the period 2009-2015 has been as great as 11 m (36 ft).{\textquotedblright}(p.2) Aerial photograph, color photographs.},
	pages = {43 p.},
	institution = {Oregon State University. Hatfield Marine Science Center,},
	address = {Newport, Or.},
	keywords = {amphipods, aquatic invertebrates, beaches, benthos, chum salmon  = Oncorhynchus keta, coastal hazards, erosion, fish, Hatfield Marine Science Center, Pacific staghorn sculpin = Leptocottus armatus, physical, Shiner perch = Cymatogaster aggregate, species list, terrestrial vegetation, wave height data, Whitebait smelt = Allosmerus elongates, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/1z40kt28z},
	author = {Cowen, Robert and Nelson, Walt and Arbuckle, Scarlett and Folger, Christina and Allan, Jonathan and Heppell Laboratory,}
}
@article {76336,
	title = {Hatfield Marine Science Center Dynamic Revetment Report DSL Permit $\#$45455-FP Monitoring Report February, 2014 Report},
	year = {2014},
	note = {This is the third in a series of five annual reports concerning control of erosion along Yaquina Bay next to the Hatfield Marine Science Center. Parts of the shoreline were stabilized in 2007 and 2011. Before more dynamic revetments will be permitted, a five-year study of nearby unmodified shorelines is required. {\textquotedblleft}Monitoring of beach profiles indicated that as of December 2013, the 2011 Dynamic Revetment Project (DRP) has successfully stabilized the shoreline in the project area, while rapid erosion has continued in the adjacent Reference beach area. Erosion in the unprotected Reference area in the period 2009-2013 has been as great as 9.6 m (31.5 ft).{\textquotedblright} (from the Abstract) Aerial photograph, color photographs.},
	pages = {37 p.},
	institution = {Oregon State University. Hatfield Marine Science Center},
	address = {Newport, Or.},
	keywords = {amphipods, aquatic invertebrates, beaches, benthos, coastal hazards, Dungeness crab = Metacarcinus magister, erosion, fish, Hatfield Marine Science Center, Pacific staghorn sculpin = Leptocottus armatus, physical, Shiner perch = Cymatogaster aggregate, species list, terrestrial vegetation, wave height data, Whitebait smelt = Allosmerus elongates, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/cf95jb894},
	author = {Cowan, Robert and Nelson, Walt and Allan, Jonathan and Arbuckle, Scarlett and Heppell Laboratory, and Folger, Christina L.}
}
@article {36206,
	title = {Hatfield Marine Science Center Dynamic Revetment Report DSL Permit $\#$45455-FP Monitoring Report February, 2013},
	year = {2013},
	note = {This is the second in a series of five annual reports concerning control of erosion along Yaquina Bay next to the Hatfield Marine Science Center.  Parts of the shoreline were stabilized in 2007 and 2011.  Before more dynamic revetments will be permitted, a five-year study of nearby unmodified shorelines is required.  {\textquotedblleft}Monitoring of beach profiles indicated that as of December 2012, the 2011 Dynamic Revetment Project (DRP) has successfully stabilized the shoreline in the project area, while rapid erosion has continued in the adjacent Reference beach area. Erosion in the unprotected Reference area in the period 2009-2012 has been as great as 9 m (29.5 ft).{\textquotedblright} (from the Abstract)  Aerial photograph, color photographs.},
	pages = {41 p.},
	institution = {Oregon State University. Hatfield Marine Science Center},
	address = {Newport, Or.},
	keywords = {American Coot = Fulica Americana, amphipods, aquatic invertebrates, beaches, benthos, birds, coastal hazards, erosion, fish, Hatfield Marine Science Center, Pacific staghorn sculpin = Leptocottus armatus, physical, Shiner perch = Cymatogaster aggregate, species list, terrestrial vegetation, wave height data, Western gull = Larus occidentalis, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/4x51hj35n},
	author = {Janet G Webster and Nelson, Walt and Allan, Jonathan and Stephensen, Shawn and Politano, Vincent and Folger, Christina L.}
}
@article {36201,
	title = {Hatfield Marine Science Center Dynamic Revetment Report DSL Permit $\#$45455-FP Monitoring Report February, 2012},
	year = {2012},
	note = {This is the first of a series of five annual reports concerning control of erosion along Yaquina Bay next to the Hatfield Marine Science Center.  Parts of the shoreline were stabilized in 2007 and 2011.  Before more dynamic revetments will be permitted, a five-year study of nearby unmodified shorelines is required.  {\textquotedblleft}A Dynamic Revetment (gravel beach) was installed in November, 2011 on the shoreline along the northeastern edge of the HMSC to mitigate erosion that threatened HMSC critical infrastructure. Shoreline topographic and biological monitoring was initiated before and continued after the project completion. Monitoring of beach profiles along the project area showed that a Dynamic Revetment installed in 2007 had been successful in stabilizing further retreat of the beach. As of January 2012, the2011 project also appears to have stabilized the shoreline, while rapid erosion has continued in the adjacent Reference beach area. {\textquotedblleft} (from the Abstract)  The report includes aerial photographs, charts and color photographs.},
	pages = {31 p.},
	institution = {Oregon State University. Hatfield Marine Science Center},
	address = {Newport, Or.},
	keywords = {American Coot = Fulica Americana, amphipods, aquatic invertebrates, beach wrack, beaches, benthos, birds, coastal hazards, erosion, fish, Hatfield Marine Science Center, Pacific staghorn sculpin = Leptocottus armatus, physical, Shiner perch = Cymatogaster aggregate, species list, terrestrial vegetation, wave height data, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/xd07gt292},
	author = {Boehlert, George and Nelson, Walt and Allan, Jonathan and Harris, Erica and Stephensen, Shawn and Politano, Vincent and Folger, Christina L.}
}
@article {51321,
	title = {Oregon Climate Assessment Report},
	year = {2010},
	note = {An eye-opening look ahead. },
	pages = {417 p.},
	institution = {Oregon State University. College of Oceanic and Atmospheric Sciences. Oregon Climate Change Research Institute,},
	address = {Corvallis, Or.},
	keywords = {agriculture, climate, climate change, coastal hazards, demographics, depleted populations, economics, fish, human impact, invasive species, phenology, precipitation, temperature, terrestrial vegetation, water temperature, wildlife},
	url = {https://digital.osl.state.or.us/islandora/object/osl\%3A637577},
	author = {Oregon State University. Oregon Climate Change Research Institute,}
}
@article {83252,
	title = {Oregon Aquatic Habitat:  Restoration and Enhancement Guide},
	year = {1999},
	note = {This guide includes many activities intended to improve the health of watersheds. {\textquotedblleft}Some measures are directly targeted at restoring stream channels by upgrading culverts to expand the amount of stream miles that can support fish. Other measures reintroduce structure to stream channels that have been simplified due to past management practices and/or disturbance events. Measures are also included that address riparian and upland restoration needs{\textquotedblright} (from the Introduction)},
	month = {1999},
	pages = {103 p.},
	institution = {Oregon Plan for Salmon and Watersheds },
	address = {[Corvallis, Or.]},
	keywords = {ecosystem health, fish, habitat restoration, habitats, natural resource management},
	url = {https://digital.osl.state.or.us/islandora/object/osl:16552/datastream/OBJ/view }
}
@article {33266,
	title = {Why Protect Yaquina Bay?},
	year = {1997},
	note = {Guin *Yaquina File},
	keywords = {abundance, aquatic invertebrates, aquatic vegetation, biological, birds, commercial fisheries, community ecology, dredging, energy, estuarine dynamics, fish, general, geographic distribution, historical, human impacts, land use, mammals, physical modifications, recreational uses, Yaquina Bay},
	author = {Osis, Vicki and Philips, Brady and Martin, Amy}
}
@article {31321,
	title = {System Strategy for California, Oregon, and Washington Fishing Industry and Public Ports Infrastructure Needs and Assessment:  Technical Analysis},
	year = {1982},
	note = {Ring binder divided into sections. Page numbering starts over with each section. "Prepared for West Coast Fisheries Development Foundation, Portland, Oregon." Describes state of the West Coast groundfish and shellfish fishing industry in the early 1980s. Includes brief description of the Port of Newport and its infrastructure, and fish processing capacity. Reviews the market and summarizes possible approaches for development. Includes maps.},
	institution = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service ; Economic Development Administration, },
	address = {[Washington, D.C.?] },
	keywords = {commercial fisheries - groundfish, commercial fisheries - shellfish, fish, industrial development, ports},
	author = {Kramer, Chin \& Mayo, and Natural Resources Consultants, and Ogden Beeman and Associates,}
}
@article {30241,
	title = {Two new species of <i>Malmiana</i> (Hirudinea: Piscicolidae) from Oregon coastal waters},
	journal = {Journal of Parasitology},
	volume = {63},
	number = {1},
	year = {1977},
	note = {"Malmiana virida sp. n., parasitic on buffalo sculpins, Enophrys bison, in Yaquina Bay estuary, and Malmiana diminuta sp. n., a parasite of rockfishes, Sebastes spp., and cabezon, Scorpaenichthys marmoratus, are described." (from the Abstract). Note: initial species names were not the final approved names for these new species. For more information, see World Register of Marine Species ( https://www.marinespecies.org/ ).},
	pages = {p.130-136},
	keywords = {annelids, buffalo sculpin = Enophrys bison, cabezon = Scorpaenichthys marmoratus, fish, Janusion diminuta (Malmiana diminuta), Janusion virida (Malmiana virida), new species description, parasites, Rockfish = Sebastes spp.},
	author = {Burreson, E. M.}
}
@article {27776,
	title = {Report of dam at Chitwood mill on Haxel Creek, a tributary of Thornton Creek},
	volume = {no.22},
	year = {1952},
	note = {Describes an investigation of a dam at a millpond near the village of Chitwood, Oregon. The dam was on Haxel Creek, a tributary of Thornton Creek, a tributary of the Yaquina River. Includes a hand-drawn map of the area.},
	pages = {3 p.},
	institution = {Fish Commission of Oregon, Shellfish Program},
	keywords = {Chitwood, dams, fish, Haxel Creek, logging, salmonid species, Thornton Creek, Yaquina River},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/z603qx87v},
	author = {Waldron, Kenneth D. and Oregon. Fish Commission. Shellfish Program}
}
@article {36211,
	title = {Oregon{\textquoteright}s Wild Life Resource.  A Report by Advisory Committee on Wild Life and Research Staff.  State Planning Board},
	year = {1936},
	note = {Before World War II, relatively few natural resource management reports from Oregon state agencies were published.  This report covers current (circa 1936) management issues, fur-bearing animals, predators, waterfowl, upland game birds, fisheries and conservation. Fisheries data includes salmon pack statistics, 1880-1931, as well as statistics (various years) for seal and sea lion bounties, hatchery releases and fish eggs taken, and fisheries catch statistics.  The report contains interesting details, such as a list of private game reservations. {\textquotedblleft}Commercial catching of clams is forbidden the year round at Netarts Bay, Tillamook County.{\textquotedblright} (p.81) {\textquotedblleft}Rakes or submerged pots may not be used to catch crabs in Yaquina or Siletz Bay or Rivers. The only device legal there is the regular open net called a ring or hoop.{\textquotedblright} (p.82) Maps, charts, tables.},
	pages = {148 p.},
	institution = {Oregon State Planning Board,},
	address = {Salem, Or.},
	keywords = {Alsea River, California sardine = Sardinops sagax, commercial fisheries, Coos Bay, Coquille River, depleted populations, fish, general, hatcheries, human impacts, Klamath River, natural resource management, Necanicum River, Nehalem River, Netarts Bay, Pacific salmonids = Oncorhynchus species, recreational fisheries, Rogue River, shellfish, Siletz River, Siuslaw River, statistics, Tillamook Bay, Trask River, Umpqua River, water pollution, Yaquina River},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/h702q722c},
	author = {Oregon State Planning Board,}
}
