@mastersthesis {83172,
	title = {Evaluation of a Habitat Suitability Model to predict the geospatial distribution of Olympia oyster presence in Yaquina Bay, Oregon},
	year = {2019},
	note = {This intriguing Capstone Project report takes the place of a Masters thesis. In this work, the author explores Habitat Suitability Modeling, a way to predict how wild Yaquina oysters are distributed through understanding their environmental requirements.  {\textquotedblleft}This project evaluates the use of an HSM, developed using geospatial raster layers of salinity, substrate, and elevation, in Yaquina Bay, Oregon to predict locations of Olympia oyster presence. This study was unable to make a conclusive determination regarding the predictive capacity of the HSM due to a small number of field samples. Recommendations are provided for expanding the HSM and supporting several other management applications, including characterizing the abiotic and biotic attributes of the habitat occupied by Olympia oysters and identifying biological monitoring sites{\textquotedblright} (from the Abstract). Colored maps.  The major professor was Steven S. Rumrill.},
	pages = {90 p.},
	school = {Oregon State University},
	type = {Capstone Project},
	edition = {M.S.},
	chapter = {College of Earth, Ocean, and Atmospheric Sciences. Marine Resource Management Program},
	address = {Corvallis, Or.},
	keywords = {aquatic invertebrates, bivalves, Craigie Point, depleted populations, geographical distribution, habitats, mathematical modeling, McClean Point, mollusks, Olympia oyster=Ostrea lurida (Ostrea conchaphila), oysters, The Bend, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/graduate_projects/0v838678g },
	author = {Bohlen, Victoria L.}
}
@article {76886,
	title = {EPA{\textquoteright}s Benthic Habitat Data for Yaquina Estuary [PowerPoint Presentation]},
	year = {2014},
	note = {This is a .pdf of a PowerPoint presentation highlighting various datasets on Yaquina Bay that are maintained by the scientists at EPA{\textquoteright}s National Health and Environmental Effects Research Laboratory, Western Ecology Division (WED). A number of maps of Yaquina Bay featuring this data are shown.},
	pages = {15 slides},
	keywords = {amphipods, aquatic vegetation, bathymetry, benthos, Craigie Point, Ghost shrimp = Neotrypaea californiensis  (Callianassa californiensis), habitats, Hatfield Marine Science Center, Idaho Flat, Japanese seagrass = Zostera japonica, maps, Mud shrimp = Upogebia pugettensis, North Jetty, Poole Slough, Riverend, Sally{\textquoteright}s Bend, seagrass = Zostera marina, South Beach Marina, South Jetty, Toledo Airport, ultraviolet radiation, wave data, wind data, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/w66344146},
	author = {DeWitt, Ted}
}
@article {36586,
	title = {Tsunami inundation maps for Toledo, Lincoln County, Oregon},
	volume = {No. TIM-Linc-08.},
	year = {2013},
	note = { 2 maps : col. ; 84 x 133 cm., on sheet 86 x 135 cm.  Plate 1. Local source (Cascadia Subduction Zone) tsunami inundation map Toledo, Oregon -- Plate 2. Distance source (Alaska-Aleutian Subduction Zone) tsunami inundation map Toledo, Oregon.  May be viewed online at the NANOOS website (click on DOGAMI to access).},
	institution = {Oregon. Dept. of Geology and Mineral Industries},
	address = {Portland, Or.},
	keywords = {Boone Slough, coastal hazards, Craigie Point, Depot Slough, earthquakes, maps, Nute Slough, Olalla Slough, Toledo (Or.), tsunamis, Yaquina River},
	url = {https://pubs.oregon.gov/dogami/tim/p-TIM-Linc-08.htm},
	author = {Oregon. Dept. of Geology and Mineral Industries, and National Tsunami Hazard Mitigation Program (U.S.),}
}
@article {36591,
	title = {Tsunami inundation maps for Yaquina River, Lincoln County, Oregon},
	volume = {No. TIM-Linc-09},
	year = {2013},
	note = {2 maps : col. ; 84 x 133 cm., on sheet 86 x 135 cm. Plate 1. Local source (Cascadia Subduction Zone) tsunami inundation map Yaquina River, Oregon -- Plate 2. Distance source (Alaska-Aleutian Subduction Zone) tsunami inundation map Yaquina River, Oregon.  May be viewed online at the NANOOS website (click on DOGAMI to access).},
	institution = {Oregon. Dept. of Geology and Mineral Industries},
	address = {Portland, Or.},
	keywords = {Boone Slough, coastal hazards, Craigie Point, earthquakes, Flesher Slough, Grassy Point, Green Point, maps, Nute Slough, tsunamis, Yaquina River},
	url = {https://pubs.oregon.gov/dogami/tim/p-TIM-Linc-09.htm},
	author = {Oregon. Dept. of Geology and Mineral Industries, and National Tsunami Hazard Mitigation Program (U.S.),}
}
@article {33851,
	title = {Effects of the invasive, nonindigenous seagrass <i>Zostera japonica</i> on nutrient fluxes between the water column and benthos in a NE Pacific estuary},
	journal = {Marine Ecology Progress Series},
	volume = {254},
	year = {2003},
	month = {Jun 4_2003},
	pages = {69-80},
	keywords = {ammonium, biological, Coquille Point, Craigie Point, Criteser{\textquoteright}s Marina, Grassy Point, Idaho Point, Japanese eelgrass=Zostera japonica, King Slough, Montgomery Creek, nitrate-nitrite, nutrient cycles, Oneatta Point, Oysterville, phosphorus, Sally{\textquoteright}s Slough},
	doi = {10.3354/meps254069},
	url = {https://www.int-res.com/articles/meps2003/254/m254p069.pdf},
	author = {Larned, Scott T.}
}
@mastersthesis {33531,
	title = {Benthic Biological Invasions in Two Temperate Estuaries and Their Effects on Trophic Relations of Native Fish and Community Stability},
	year = {2000},
	note = {Major professor was Hiram Li. Investigated non-indigenous benthic invertebrates in Yaquina and Alsea bays, especially as prey for two native species of flatfish. Found 11 non-indigenous benthic invertebrate species in Yaquina Bay, and 8 in Alsea Bay.},
	month = {2000},
	pages = {251 p.},
	school = {Oregon State University},
	type = {Doctoral Dissertation},
	edition = {Ph. D.},
	chapter = {Dept. of Fisheries and Wildlife},
	address = {Corvallis, Or.},
	keywords = {amphipods, aquatic invertebrates, biological, community ecology, Corophium species, Craigie Point, English sole=Pleuronectes vetulus, Green Point, Idaho Flats, introduced species, Mill Creek, Pooles Slough, species list, starry flounder=Platichthys stellatus, The Bend, theses, Toledo Airport},
	url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/mc87pt10t},
	author = {Castillo, Gonzalo C.}
}
@article {36666,
	title = {The European Green Crab (<i>Carcinus maena</i>s) in Oregon: A Preliminary Survey of Yaquina, Coos, Winchester and Siletz Bays},
	year = {1997},
	note = {Accessed by opening a .zip file.  {\textquotedblleft}During the summer and fall of 1997, the students and instructors of an Oregon State University Zoology class (Zoology 401/Research) searched for the presence of the European Green Crab (Carcinus maenas) in Coos, Winchester, Yaquina and Siletz Bays, Oregon and also took inventories of common intertidal species... We trapped one adult male green crab at Pony Point in Coos Bay on October 26, 1997. This crab measured 86.5 mm in carapace width and represents the largest specimen so far collected in Oregon. All the green crabs retrieved in Coos Bay have been large adults between 58 and 86 mm. We searched gravel substrates below boulders and algal blades, but never recovered any young-of the-year-green crabs in Coos, Winchester, Yaquina or Siletz Bays. These findings suggest that one year class (perhaps 1995) established itself in Coos Bay, but at present is not abundant enough to perpetuate itself.{\textquotedblright} (from the Abstract)},
	institution = {Oregon State University},
	address = {Corvallis, Or.},
	keywords = {algae, aquatic invertebrates, Charleston (OR.), Coos Bay, Craigie Point, Criteser{\textquoteright}s Moorage, crustaceans, European green crab = Carcinus maenas, Fucus spp., Georgia-Pacific, Hatfield Marine Science Center, Hinton Point, Idaho Point, invasive species, molluscs, Oregon Oyster Farm, Oregon shore crab = Hemigrapsus oregonensis, Pony Point, Purple shore crab = Hemigrapsus nudus, River Bend, salinity, Sawyer{\textquoteright}s Landing, Schooner Creek, Siletz Bay, spatial distribution, species list, Umpqua River estuary, Umpqua River finger jetty, Umpqua triangle, Winchester Bay, Yaquina Bay south jetty},
	url = {https://ir.library.oregonstate.edu/concern/defaults/xg94hv61v},
	author = {Angel, Tiah and Bassett, Zasha and Chipman, Brian and Cleveland, Kimberly and Cronick, Tamisha and Ehlig, Janette and Frerich, Dan and Hunt, Chris and Ison, Todd and McGuire, Angela and Oliver, Jennifer and Schmelter, Anja and Whitsett, Jennifer}
}
@article {30786,
	title = {Chemical Carcinogens in Bivalve Mollusks from Oregon Estuaries},
	volume = {EPA-600/3-79-034},
	year = {1979},
	month = {March_1979},
	pages = {33 p.},
	institution = {Environmental Research Laboratory, Office of Research and Development, U.S.  Environmental Protection Agency},
	address = {Gulf Breeze, FL},
	keywords = {Alsea River estuary, bay mussel=Mytilus edulis, biological, chemical, Coast Guard Station, Coos Bay estuary, Craigie Point, hydrocarbons, Idaho Flats, McLean Point, Netarts estuary, Oregon State University Hatfield Marine Science Center, Port of Newport Dock 1, Port of Newport Dock 3, Port of Newport Dock 5, Port of Newport Dock 7, precipitation data, salinity data, Sally{\textquoteright}s Bend, Sally{\textquoteright}s Slough, Sawyer{\textquoteright}s Landing, softshell clam=Mya arenaria, Tillamook estuary, water pollution, water temperature data, Winant, Yaquina Bay Bridge},
	url = {https://nepis.epa.gov/Exe/ZyPDF.cgi/9100A6VA.PDF?Dockey=9100A6VA.PDF},
	author = {Mix, Michael C. and Environmental Research Laboratory (Gulf Breeze, FL), and Oregon State University. Dept. of General Science,}
}
@mastersthesis {30401,
	title = {An Application of  a Mathematical Hydraulics Model to Yaquina Bay, Oregon},
	year = {1977},
	note = {Major professor was Charles B. Miller. },
	month = {September_1977},
	pages = {251 p.},
	school = {Oregon State University},
	type = {Masters Thesis},
	edition = {M.S.},
	chapter = {School of Oceanography},
	address = {Corvallis, Or.},
	keywords = {Acartia species, aquatic invertebrates, biological, Buoy 21, Butler Bridge, copepods, Craigie Point, crustaceans, Elk City, Elk Creek, geographical distribution, mathematical modeling, Mill Creek, physical, salinity, theses, tidal data, Toledo, water temperature, Yaquina, Yaquina Bay, Yaquina River},
	url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/s7526g38x},
	author = {Reed, John Cooper}
}
@mastersthesis {29816,
	title = {Biological Studies on the Hemoflagellates of Oregon Marine Fishes and Their Potential Leech Vectors},
	year = {1975},
	note = {Includes electron micrograph and excellent line drawings.  Although the author notes where leeches were found in Yaquina Bay, all infected fish were found in the ocean:  no fish collected from Yaquina Bay were found to be infected with hemoflagellates.  Major professor was Dr. Robert E. Olson. },
	month = {April_1975},
	pages = {134 p.},
	school = {Oregon State University},
	type = {Doctoral Dissertation},
	edition = {Ph. D.},
	chapter = {Dept. of Zoology},
	address = {Corvallis, Or.},
	keywords = {aquatic invertebrates, biological, Coquille Point, Craigie Point, fish disease, fishes, Green Point, hemoflagellates, leeches, Oregon State University Hatfield Marine Science Center, parasites, physiology, theses, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/2r36v182q},
	author = {Burreson, Eugene M.}
}
@article {83167,
	title = {Transcript of interview with Mrs. Violet Updike, July 16, 1975},
	year = {1975},
	note = {This oral history gives a delightful look into early days on Yaquina Bay, especially of the oyster industry, in which the speaker{\textquoteright}s father participated. Daily life and education are featured. Mrs. Updike was an early teacher in Lincoln County. The interview was originally tape-recorded as part of a journalism project at Oregon State University to commemorate the American bicentennial. While the tape has deteriorated, a transcript of the interview is available by contacting the University Library{\textquoteright}s Special Collections and Archives department:   http://scarc.library.oregonstate.edu/ .},
	pages = {19 p.},
	institution = {Oregon Pioneers Oral History Collection (OH 01), Oregon State University Archives},
	address = {Corvallis, Or.},
	keywords = {Aquatic invertebrate, bivalves, commercial fisheries {\textendash} shellfish, Craigie Point, historical, mollusks, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Oyster City, Oysterville, Toledo (Or.), Yaquina Bay},
	author = {Oregon State University Jouralism Department, and Carlson, Judith Carol and Gilfillan, Francois Archibald and Starker, Thurman James and Strand, August Leroy}
}
@mastersthesis {29551,
	title = {Effects of Bark Debris on Benthic Macrofauna of Yaquina Bay, Oregon},
	year = {1973},
	note = {Major professor was Richard S. Caldwell. Masters thesis.},
	month = {August_1973},
	pages = {94 p.},
	school = {Oregon State University},
	type = {Masters Thesis},
	edition = {M.S.},
	chapter = {Dept. of Fisheries and Wildlife},
	address = {Corvallis, Or.},
	keywords = {aquatic invertebrates, biological, Boone Slough, Craigie Point, Montgomery Creek, Nute Slough, sediments, temporal distribution, theses, Toledo Airport, Yaquina Bay, Yaquina River},
	url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/gb19f908t},
	author = {Walker, John D.}
}
@mastersthesis {28571,
	title = {Distribution of Recent Foraminifera in Relation to Estuarine Hydrography, Yaquina Bay, Oregon},
	year = {1968},
	note = {Studied foraminifera in Yaquina Bay to see how seasonal changes in hydrography affected their distribution. Includes sediment maps of Yaquiina Bay and distribution maps for selected foraminifera. Includes plates with line drawings of foraminifera. Major professor was Dr. H. F. Frolander.  },
	month = {1968},
	pages = {176 p.},
	school = {Oregon State University},
	type = {Doctoral Dissertation},
	edition = {Ph. D.},
	chapter = {Dept. of Oceanography},
	address = {Corvallis, Or.},
	keywords = {aquatic invertebrates, biological, Coquille Point, Craigie Point, Depot Slough, estuarine dynamics, foraminifera, geographical distribution, Grassy Point, Hatfield Marine Science Center, Hinton Point, hydrology, Idaho Point, King Slough, McCaffery Slough, McLean Point, Oneatta Point, physical, Poole Slough, salinity data, Sally{\textquoteright}s Bend, temporal distribution, theses, water temperature data, Yaquina Bay},
	url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/zs25xc85p},
	author = {Manske, Douglas C.}
}
