@article {83195, title = {Restoring Sea Otters to the Oregon Coast: A Feasibility Study}, year = {2023}, note = {When sea otters were exterminated in Oregon, there was no predator to stop the sea urchin population from expanding. Sea urchins eat kelp. More urchins mean less kelp. Less kelp means that many animals lose valuable habitat. Nearshore waters become rougher, because kelp beds cause the seas to lie down. The post-otter environment is less diverse and less hospitable. The Elakha Alliance (named for the Chinook Jargon word for sea otter) has been formed to realize the vision of bringing the sea otter back to Oregon. This book is about their dream. The authors have meticulously examined multiple aspects of the problem, from environmental to legal, and conclude that it is possible to bring otters back. Interestingly, estuaries may provide valuable launching grounds, offering more protection than the open sea. As keystone predators, sea otters would help restore an environment badly out of balance, and would provide many benefits aside from being adorable. As they say, the best dreams happen when we are awake. Colored maps, colored pictures.}, month = {2023}, pages = {249 p.}, institution = {Elakha Alliance}, edition = {2nd ed.}, address = {Siletz, Or.}, keywords = {Coos Bay, economics, ecosystem health, environmental law and policy, genetics, habitats, histology, historical, human impacts, marine mammals, population biology, Reintroductions, Sea otter = Enhydra lutris, sociology, Tillamook Bay, Translocations, Yaquina Bay}, url = {https://www.elakhaalliance.org/feasibility-study/ }, author = {Tinker, M. Tim and Estes, James and Bodkin, James and Larson, Shawn and Murray, Mike and Hodder, Jan and Elakha Alliance.} } @article {83189, title = {Nonfishing impacts on essential fish habitat}, volume = {no.2022-01}, year = {2022}, note = {Many human activities that are not directly related to fishing can harm essential fish habitat. This publication looks at 19 different human activities that can damage essential fish habitat, from climate change to forest management to noise pollution, and more. The authors describe for each activity what is known to affect essential fish habitat, potential impacts, {\textquotedblleft}and provide proactive conservation measures designed to minimize or avoid them{\textquotedblright} (from the Plain Language Summary).}, month = {2022, Dec.}, pages = {258 p.}, institution = {National Marine Fisheries Service}, address = {Seattle, Wash.}, keywords = {agriculture, Alsea River, aquaculture, climate, dams, dredging, energy, general, industrial development, Industrial waste, logging, mining, Noise, oil spills, Oregon Coast, ports, Sewage, shipping, Yaquina River}, doi = {https://doi.org/10.25923/zxz1-m712}, url = {https://repository.library.noaa.gov/view/noaa/48083/noaa_48083_DS1.pdf }, author = {Kiffney, Peter and Thompson, Jamie and Blaud, Brianna and Hoberecht, Laura} } @article {83269, title = {Landscape genetics of American beaver in coastal Oregon}, journal = {The Journal of Wildlife Management}, volume = {85}, number = {7}, year = {2021}, note = {American beavers have often been moved from one location, where their dams and flooding might be a nuisance, to another, where they help with stream and water table restoration. The authors review the history of trapping and translocations of beavers in the Oregon Coast Range. {\textquotedblleft}Management requires a better understanding of the ability of beaver to disperse and colonize empty habitat, and the distances or landscapes over which a beaver, if translocated, is unlikely to return. We evaluated genetic structure and applied a landscape genetic approach to characterize landscape features that influence genetic flow for beaver in the Coast Range of Oregon.{\textquotedblright} (p.1464)}, month = {2021, Sep.}, pages = {p.1462-1475}, keywords = {Alsea River, Coos River, Coquille River, genetics, geographical distribution, habitats, human impacts, Necanicum River, Nehalem River, Nestucca River, North American beaver = Castor canadensis, North Umpqua River, Siletz River, Siltcoos River, Siuslaw River, Sixes River, South Umpqua River, topography, Trask River, Umpqua River, Wilson River, Yaquina River}, doi = {https://doi.org/10.1002/jwmg.22102}, author = {Epps, Clinton W. and Petro, Vanessa M. and Creech, Tyler G. and Crowhurst, Rachel S. and Weldy, Matthew J. and Taylor, Jimmy D.} } @article {82984, title = {Status of the European Green Crab, Carcinus maenas, in Oregon and Washington Coastal Estuaries in 2019}, year = {2020}, note = {The invasive European green crab is a voracious predator of bivalve molluscs, small crustaceans and other organisms. It has been present in Oregon since the late 1990s. The population grows when winter waters are warm, as they are during El Ni{\~n}os. {\textquotedblleft}After the arrival of a strong year class in 1998, significant recruitment to the populations occurred only in2003,2005,2006,2010, 2015, 2016, 2017, 2018 and 2019. Warm winter water temperatures, high Pacific Decadal Oscillation (PDO) and Multivariate ENSO (El Ni{\~n}o Southern Oscillation) Indices, and a high abundance of southern copepods are all correlated with strong year classes and vice versa. . . Prior to 2015, green crabs were too rare (<0.2 per trap) to exert measurable effects on the native benthic community and on shellfish culture in Oregon and Washington. But after the 2015-2016 El Ni{\~n}o, we document the arrival of five strong year classes. Average catches steadily increased from 0.5 crabs per trap, in 2015 to around 3 crabs per trap in 2017 to 2019. The catches in the last 3years are much higher than in any of the previous years, including 1998. Catches in some hotspots exceed 10 crabs per trap, a level at which measurable ecological impact can be expected. . . Since green crabs live for 6 years, these five consecutive year classes can produce larvae until 2025.{\textquotedblright} (from the Executive Summary) Coos Bay, in particular, has experienced shocking growth of this population, going from 9 crabs captured in 2002 to 1,397 crabs captured in 2019. This report is accompanied by a dataset, available at: https://ir.library.oregonstate.edu/concern/datasets/028712995 }, pages = {31 p.}, institution = {Pacific States Marine Fisheries Commission. Aquatic Nuisance Species Project}, address = {Portland, Or.}, keywords = {Alsea Bay, aquatic invertebrates, Coos Bay, Coquille River estuary, crustaceans, El Ni{\~n}o, European green crab = Carcinus maenas, introduced species, Nehalem Bay, Netarts Bay, Pacific Decadal Oscillation, population count, Tillamook Bay, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/xk81js14x }, author = {Yamada, Sylvia Behrens, and Schooler, Shon and Heller, Renee and Donaldson, Luke and Takacs, Graham T. and Randall, Andrea and Buffington, Chelsey and Akmajian, Adrianne} } @article {82911, title = {Evidence for regional-scale controls on eelgrass (Zostera marina) and mesograzer community structure in upwelling-influenced estuaries}, journal = {Limnology and Oceanography}, volume = {64}, number = {3}, year = {2019}, note = {{\textquotedblleft}In estuaries of the U.S. Pacific Northwest coast, eelgrass (Zostera marina ) ecosystems are exposed to latitudinally varying oceanographic inputs in the form of ocean upwelling. Previous research suggests that ocean upwelling is critical to eelgrass and ulvoid macroalgae abundance, but the degree to which secondary producers are controlled by processes at regional vs. local scales is unknown. Here, we consider the relationships among primary producers (eelgrass, ulvoid macroalgae, and epiphytic microalgae), epifaunal mesograzers, and mesopredator fish within and across three Oregon, U.S.A., estuaries during a spring{\textendash}summer season to examine the role of multiple scales in structuring these communities.{\textquotedblright} (from the Abstract) Suppplementary material in a separate file accompanies this article.}, month = {2019, May}, pages = {p.1120-1134}, keywords = {algae, community ecology, Coos Bay, eelgrass = Zostera marina, eutrophication, fish, Grazing, Netarts Bay, primary production, Ulva spp., upwelling, Yaquina Bay}, doi = {https://doi.org/10.1002/lno.11102 }, author = {Hayduk, Jennifer L. and Hacker, Sally D. and Henderson, Jeremy S. and Tomas, Fiona} } @article {82016, title = {Ecological and biological studies of ocean rafting: Japanese tsunami marine debris in North America and the Hawaiian Islands}, journal = {Aquatic Invasions}, volume = {13}, year = {2018}, note = {{\textquotedblleft}This is one of the papers from the special issue of Aquatic Invasions on {\textquoteleft}Transoceanic Dispersal of Marine Life from Japan to North America and the Hawaiian Islands as a Result of the Japanese Earthquake and Tsunami of 2011.{\textquoteright}{\textquotedblright} (Co-Editors{\textquoteright} Note). This article is an introduction to the special issue of Aquatic Invasions. It summarizes the largest examples of tsunami debris found on the American Pacific coast and recounts the discovery of many new Japanese species identified as a result of research. Includes color photographs. This is an open-access article.}, month = {2018, Feb.}, pages = {p.1-9}, keywords = {Agate Beach, algae, aquatic invertebrates, coastal hazards, Coos Bay, earthquakes, genetics, geographical distribution, Gleneden Beach, introduced species, morphology, Pacific Coast, Seal Rock, species list, taxonomy, tsunamis}, doi = {https://doi.org/10.3391/ai.2018.13.1.01}, url = {https://tinyurl.com/2pxmp6e8}, author = {Carlton, James T. and Chapman, John W. and Geller, Jonathan B. and Miller, Jessica A. and Ruiz, Gregory M. and Carlton, Deborah A. and McCuller, Megan I. and Treneman, Nancy C. and Steves, Brian P. and Breitenstein, Ralph A. and Lewis, Russell and Bilderback, David and Bilderback, Diane and Haga, Takuma and Harris, Leslie H.} } @article {83229, title = {Ecological Effects of Tide Gate Upgrade or Removal: A Literature Review and Knowledge Synthesis}, year = {2018}, note = {{\textquotedblleft}This document reports on findings, conclusions and recommendations derived from scientific literature and knowledge regarding the effectiveness of tide gate removal or upgrade in improving conditions for Oregon{\textquoteright}s native migratory fish species, particularly salmonids, and other plant and animal species that utilize estuarine ecosystems. The project was commissioned by the Oregon Watershed Enhancement Board (OWEB) to foster better understanding of the effectiveness of their past investments in estuary habitat restoration involving tide gates, and to aid in targeting future investments. This will be especially important because many less-complicated projects (e.g. those on public land, smaller, single-action projects, those with consensus on land use) have already been completed, and restoration efforts are becoming increasingly complex and resource intensive{\textquotedblright} (from the Executive Summary).}, pages = {136 p.}, institution = {Institute for Natural Resources, Oregon State University }, address = {Corvallis, Or.}, keywords = {Bandon Marsh, Coho salmon = Oncorhynchus kisutch, Columbia River estuary, Coos Bay, depleted populations, dike removal, environmental law and policy, fish passage, flooding, human impacts, Little Nestucca River, Nehalem River, Pacific salmonids = Oncorhynchus spp., salinity, Salmon River Estuary, Siletz Bay, Siuslaw River, Tidal channels, Tide gates, Tillamook Bay, water temperature, wetland restoration, Yaquina Bay}, url = {https://www.oregon.gov/oweb/Documents/Tide-Gate-Ecological-Effects.pdf }, author = {Souder, Jon A. and Tomaro, Londi M. and Giannico, Guillermo R. and Behan, Jeff R.} } @article {83011, title = {Expansion and systematics redefinition of the most threatened freshwater mussel family, the Margaritiferidae}, journal = {Molecular Phylogenetics and Evolution}, volume = {127}, year = {2018}, note = {In this article, the evolution, distribution and taxonomy of the freshwater pearl mussel family, Margaritiferidae, is explored. Fossils as well as genetic data were used to model the diversification of this family. Maps, charts.}, month = {2018, Oct.}, pages = {p.98-118}, keywords = {aquatic invertebrates, bivalves, evolution, general, genetics, geographic distribution, molluscs, morphology, mussels, phylogeny, taxonomy}, doi = {https://doi.org/10.1016/j.ympev.2018.04.041 }, author = {Lopes-Lima, Manuel and Bolotov, Ivan N. and Do, Van Tu and Aldridge, David C. and Fonseca, Miguel M. and Gan, Han Ming and Gofarov, Mikhail Y. and Kondakov, Alexander V. and Pri{\'e}, Vincent and Sousa, Ronaldo and Varandas, Simone and Vikhrev, Ilya V. and Teixeira, Amilcar and Wu, Rui-Wen and Wu, Xiaoping and Zieritz, Alexandra and Froufe, Elsa and Bogan, Arthur E.} } @article {82026, title = {Impact of multiple stressors on juvenile fish in estuaries of the northeast Pacific}, journal = {Global Change Biology}, volume = {24}, year = {2018}, note = {{\textquotedblleft}Here we provide one of the first studies for coastal ecosystems examining multiple stressor effects across broad scales, focused on the nursery function of 20 estuaries spanning 1,600 miles of coastline, 25 years of monitoring, and seven fish and invertebrate species along the northeast Pacific coast.{\textquotedblright} (from the Abstract) Chinook salmon were find to be most susceptible to pollution, and English sole was most vulnerable to the loss of land cover. Some of the authors were Federal employees, making access of this article through ResearchGate permissible.}, month = {2018, May }, pages = {p.2008-2020}, keywords = {Salmon River, Siletz Bay, Yaquina Bay, Alsea Bay, Siuslaw River estuary, Chinook salmon = Oncorhynchus tshawytscha, English sole = Parophrys vetulus, abundance, human impacts, ecosystem health, environmental stress, pollution, water quality,}, doi = {https://doi.org/10.1111/gcb.14055 }, author = {Toft, Jason D. and Munsch, Stuart H. and Cordell, Jeffery R. and Siitari, Kiira and Hare, Van C. and Holycross, Brett M. and DeBruyckere, Lisa A. and Greene, Correigh M. and Hughes, Brent B.} } @article {80451, title = {Trends in the Pacific herring (Clupea pallasii) metapopulation in the California Current Ecosystem}, journal = {California Cooperative Oceanic Fisheries Investigations, Progress Report}, volume = {58}, year = {2017}, note = {This paper examines population trends for Pacific herring on the West Coast. The authors find that overall populations have been declining since the 1980s, although there are areas such as Yaquina Bay that have not seen large declines. The data hints at cyclic fluctuations in population, but more study is needed. {\textquotedblleft}We do not understand the drivers of changes occurring in the herring metapopulation, nor have the consequences to upper trophic levels in this marine ecosystem been investigated comprehensively. Expansion of current monitoring and new directed research on relationships between herring and the environment and higher level consumers is therefore warranted and essential.{\textquotedblright} (p.11)}, pages = {p.1-18}, keywords = {abundance, climate, depleted populations, geographic distribution, Pacific Decadal Oscillation, Pacific herring = Clupea pallasii, population biology, statistical analysis, Yaquina Bay}, url = {https://calcofi.com/publications/calcofireports/v58/Vol58-Thompson_pages_77-94.pdf}, author = {Thompson, Sarah Ann and Sydeman, William J. and Thayer, Julie A. and Weinstein, Anna and Krieger, Katherine L. and Hay, Doug} } @article {77411, title = {Influences of natural and anthropogenic factors and tidal restoration on terrestrial arthropod assemblages in West Coast North American estuarine wetlands}, journal = {Estuaries and Coasts}, volume = {39}, year = {2016}, note = {This article reviews studies on arthropod assemblages from 87 wetland sites in 13 West Coast estuaries. What are the distribution and abundance of these animals? How does human-caused change to the environment affect them? It turns out that restoring wetlands, such as those in the Salmon River Estuary, causes arthropod abundance to increase rapidly. {\textquotedblleft}These results suggest that restoration of tidal influence to leveed wetlands can rapidly restore some components of estuarine wetland ecosystems but that recovery of other components will take longer and may depend on the extent of anthropogenic modification of the surrounding landscape.{\textquotedblright} (from the Abstract)}, pages = {p.1491-1504}, keywords = {Columbia River, Nestucca River, Salmon River, Yaquina River, Alsea River, Siuslaw River, Coquille River, salt marsh, insects, wetland restoration, population biology, human impacts, land use}, doi = {doi: 10.1007/s12237-016-0091-3}, author = {David, Aaron T. and Goertier, Pascale A. L. and Munsch, Stuart H. and Jones, Brittany R. and Simenstad, Charles A. and Taft, Jason D. and Cordell, Jeffrey R. and Howe, Emily R. and Gray, Ayesha and Hannam, Michael P. and Matsubu, William and Morgan, Erin E.} } @article {52371, title = {Cryptic invasion of northeast Pacific estuaries by the Asian polychaete, Hediste diadroma (Nereididae}, journal = {Marine Biology}, volume = {161}, year = {2014}, note = {An invasive polychaete worm was found in all six sites in Oregon and Washington that were sampled. The Yaquina Bay samples were found near the Toledo Airport. {\textquotedblleft}The widespread distribution of H. diadroma indicates that it is a successful invader of the North American Pacific and it may have long escaped detection because of its morphological similarity to the native species, H. limnicola. The long pelagic life of H. diadroma larvae could have facilitated its successful transocean dispersal with ballast water of ships.{\textquotedblright} (from the Abstract)}, month = {2014, Jan.}, pages = {p.187{\textendash}194}, keywords = {annelids, aquatic invertebrates, Columbia River estuary, Hediste diadroma, Hediste limnicola, introduced species, Necanicum River estuary, Nehalem Bay, polychaete worms, Willapa Bay, Yaquina River Estuary}, doi = {10.1007/s00227-013-2328-z}, author = {Nishizawa, Ryogo and Sato, Masanori and Furota, Toshio and Tosuji, Hiroaki} } @article {51291, title = {Far-South ancient murrelet family groups: rapid long-distance movements or local breeding?}, journal = {Northwestern Naturalist}, volume = {94}, year = {2013}, note = {Ancient murrelets (not to be confused with marbled murrelets) are known to breed in British Columbia, at Haida Gwaii. Yet, family groups, including chicks, can be found as far south as the central Oregon coast. Are some ancient murrelets breeding south of B.C.? Or, are they finding a way to travel with unfledged chicks to their feeding grounds? This article attempts to answer this question. The furthest south family group in this study, which includes data from 1998-2011, was found offshore, just south of Newport.}, month = {2013, Win}, pages = {p.227-239}, keywords = {Ancient murrelet = Synthliboramphus antiquus, birds, depleted populations, Newport (Or.), Vancouver Island, Washington (State), Yaquina Head}, doi = {10.1898/12-36.1}, author = {Sealy, Spencer G. and Carter, Harry R. and Thomson, Richard E. and Pearson, Scott F.} } @article {34486, title = {Juvenile salmonid monitoring in coastal Oregon and lower Columbia streams, 2011}, volume = {no.OPSW-ODFW-2013-1}, year = {2012}, note = {These reports give broad trends only. Since we don{\textquoteright}t know what streams are monitored, and cannot contrast the water quality trends of those streams with the population data, these reports are of limited utility.}, pages = {25 p.}, address = {Salem, Or.}, keywords = {Coho salmon = Oncorhynchus kisutch, depleted populations, juvenile fish, population count, spatial distribution, steelhead trout = Oncorhynchus mykiss, temporal distribution}, url = {https://digital.osl.state.or.us/islandora/object/osl:43833}, author = {Constable, Ronald J., Jr. and Suring, Erik and Tippery, Sharon and Oregon. Department of Fish and Wildlife. Western Oregon Rearing Project,} } @article {83286, title = {Is the collapse of mud shrimp (Upogebia pugettensis) populations along the Pacific Coast of North America caused by outbreaks of a previously unknown bopyrid isopod parasite (Orthione griffenis)?}, journal = {Estuaries and Coasts}, volume = {34}, number = {2}, year = {2011}, note = {{\textquotedblleft}A dramatic increase in prevalence of the recently discovered bopyrid isopod parasite, Orthione griffenis, likely introduced in the 1980s from Asia to the Pacific coast of North America, coincided with the 2002 collapse of a population of its burrowing mud shrimp host, Upogebia pugettensis, in Willapa Bay, Washington that had been stable since monitoring began in 1988. An examination of whether O. griffenis infections were sufficient to cause this decline and other recently noted U. pugettensis population collapses in Pacific Coast estuaries was conducted.{\textquotedblright} (from the Abstract)}, pages = {336-350}, keywords = {aquatic invertebrates, crustaceans, depleted populations, Idaho Flats, Mud shrimp = Upogebia pugettensis, Orthione griffenis, parasites, Tillamook Bay, Willapa Bay, Yaquina Bay}, doi = {10.1007/s12237-010-9316-z}, author = {Dumbauld, Brett R. and Chapman, John W. and Torchin, Mark E. and Kuris, Armand M.} } @article {82481, title = {A Conservation Assessment of West Coast (USA) Estuaries}, year = {2011}, note = {{\textquotedblleft}Funded by: The David and Lucile Packard Foundation{\textquotedblright} {\textquotedblleft}This assessment outlines an enhanced planning approach for West Coast estuaries that incorporates an evaluation of the regional context for estuarine conservation and recommends an approach to site-scale planning with more focus on ecological processes and functions.{\textquotedblright} (p.1) {\textquotedblleft}A hierarchical classification system was developed for West Coast estuaries that identified three regions (based on climate, latitude, and oceanography) and four estuary types distinguished by the relative degree of influence of the hydrodynamic forcing mechanisms of waves, tides, and rivers.{\textquotedblright} (p.2)}, pages = {65 p.}, institution = {The Nature Conservancy}, address = {Arlington, Va. }, keywords = {Agriculture, Alsea Bay, estuarine dynamics, habitats, human impacts, hydrology, land ownership, land use, logging, mathematical modeling, Netarts Bay, Salmon River, Siletz Bay, Siuslaw River, Tillamook Bay, Umpqua River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/defaults/1r66j546d}, author = {Gleason, Mary G. and Newkirk, Sarah and Merrifield, Matthew S. and Howard, Jeanette and Cox, Robin and Webb, Megan and Koepcke, Jennifer and Stranko, Brian and Taylor, Bethany and Beck, Michael W. and Fuller, Roger and Dye, Paul and Vander Schaaf, Dick and Carter, Jena} } @article {34411, title = {Biological Assessment and Essential Fish Habitat Assessment for the Construction of NOAA{\textquoteright}s Marine Operations Center-Pacific in Newport, Oregon (Township 11 South, Range 11 West, and Section 17 6th field HUC 171002040303)}, year = {2010}, note = {"This is a Biological Assessment (BA) addressing the potential effects on aquatic species currently listed or proposed for listing under the Federal Endangered Species Act (ESA) from the construction of the National Oceanic and Atmospheric Administration{\textquoteright}s (NOAA) Marine Operations Center {\textendash} Pacific (MOC-P) in Newport, Oregon." (from the Introduction) Includes maps, charts, aerial photographs, colored illustrations, architectural drawings and construction schematics.}, month = {2010, Jun. 2}, pages = {643 p.}, institution = {Pacific Habitat Services, Inc.}, address = {Wilsonville, Or.}, keywords = {Coho salmon = Oncorhynchus kisutch, depleted populations, dredging, eelgrass = Zostera marina, Green sturgeon = Acipenser medirostris, habitats, Hatfield Marine Science Center, human impacts, introduced species, killer whale = Orca orcinus, life history information, mitigation, NOAA Marine Opeations Center - Pacific, Pacific smelt = Thaleichthys pacificus, salinity, sediments, Steller sea lion=Eumetopias jubatus, water quality, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/t722h939f}, author = {van Staveren, John and Hawkins, Amy and Tumer, Craig and Groff, Dale and Lomnicky, Gregg and Pacific Habitat Services Inc.,} } @article {26766, title = {Modelling physico-chemical factors affecting occurrences of a non-indigenous planktonic copepod in northeast Pacific estuaries}, journal = {Biological Invasions}, volume = {12}, number = {5}, year = {2010}, note = {The invasive copepod Pseudodiaptomus inopinus has become established from the Coquille River in Oregon to the Chehalis River in Washington. Although the species was introduced before 1992, it had not spread beyond its 1992 distribution by 2004, indicating that it might have reached "a distributional limit." By characterizing estuaries with and without this copepod, it might be possible to identify estuaries vulnerable to future invasions. Salinity and stratification of water column temperature seem to be good predictors. The authors also identified several estuaries that might be vulnerable to this particular invader. }, pages = {p.1427-1445}, keywords = {Coos Bay, Coquille River, introduced species, Pseudodiaptomus inopinus, Siuslaw River, Tillamook Bay, Umpqua River, Yaquina River, zooplankton}, doi = {10.1007/s10530-009-9558-5}, author = {Cordell, Jeffery R. and Tear, Lucinda M. and Bollens, Stephen M.} } @inbook {34236, title = {A fishermen{\textquoteright}s agreement and co-op in Yaquina Bay roe herring}, booktitle = {Case Studies in Fisheries Self-Governance}, series = {FAO Fisheries Technical Paper}, volume = {no.504}, year = {2008}, note = {This paper describes a private agreement between fishermen participating in a limited-entry commercial fishery for herring roe in Yaquina Bay. The co-operative formed by this agreement gives the fishermen greater flexibility, allowing them to fish when roe is likely to likely to be more abundnat, and the agreement "has proven resilient to widely fluctuating resource and market conditions..." (p.422) Map, tables. Gives statistics for herring landings in Yaquina Bay from 1978-2006.}, pages = {p.415-423}, publisher = {Food and Agriculture Organization of the United Nations}, organization = {Food and Agriculture Organization of the United Nations}, address = {Rome, Italy}, keywords = {abundance, commercial fisheries, depleted populations, economics, fecundity, Pacific herring = Clupea pallasi, Yaquina Bay}, url = {https://www.fao.org/3/a1497e/a1497e00.htm}, author = {Leal, D. R.}, editor = {Townsend, R. and Shotton, R. and Uchida, H. (eds.)} } @article {33981, title = {Dessication is a limiting factor for ellgrass (Zostera marina L.) distribution in the intertidal zone of a northeastern Pacific (USA) estuary.}, journal = {Botanica Marina.}, volume = {48}, year = {2005}, month = {2005}, pages = {274-283}, keywords = {biological, eelgrass = Zostera marina, growth, Idaho Flats, Idaho Point, King Slough, life history information, The Bend, Yaquina Bay, Yaquina City}, isbn = {0006-8055, 1437-4323 (Online)}, doi = {10.1515/BOT.2005.037}, author = {Boese, Bruce L. and Robbins, Bradley D. and Thursby, G. B.} } @article {83134, title = {Classification of Native Vegetation of Oregon}, year = {2004}, note = {{\textquotedblleft}This classification lists the native plant associations known to occur in Oregon, and includes both successional and climax vegetation types that were an important part of the presettlement landscape of Oregon. It serves as an index to the diversity, distribution and relative rarity of the state{\textquoteright}s native plant associations, and as a guide to their literature. Plant associations are listed by scientific name, followed by common name and acronym. Listings include the global and state rank of each association, the ecoregion in which it occurs, its status as wetland or upland, and references describing the association.{\textquotedblright} (from the introduction)}, pages = {52 p. }, institution = {Oregon Natural Heritage Program}, address = {Portland, Or.}, keywords = {depleted populations, species list, terrestrial vegetation, wetland vegetation}, url = {https://ir.library.oregonstate.edu/concern/defaults/kw52jd11x }, author = {Kagan, James S. and Christy, John A. and Murray, Michael P. and Titus, Jonathan A.} } @article {33941, title = {Genetic population structure of central Oregon Coast coho salmon (Oncorhynchus kisutch)}, journal = {Conservation Genetics}, volume = {5}, number = {6}, year = {2004}, note = {The "Alsea complex" includes the Alsea, Siletz and Yaquina Rivers, along with Devil Creek and Beaver Creek. These coho populations are closely related.}, pages = {p.797-812}, keywords = {Coho salmon = Oncorhynchus kisutch}, doi = {10.1007/s10592-004-1983-5}, author = {Ford, Michael J. and Teel, David J. and Van Doornik, Donald M. and Kuligowski, David and Lawson, Peter W.} } @article {33546, title = {Geographic signatures of North American West Coast estuaries}, journal = {Estuaries and Coasts}, volume = {23}, number = {6}, year = {2000}, note = {General review.}, pages = {p.765-792}, keywords = {Alsea River, brids, commercial fisheries, Coos Bay, economics, general, human impacts, marshes, Nehalem Bay, Netarts Bay, recreational fisheries, Rogue River, salmonid species, Siletz River, Siuslaw River, Tillamook Bay, Umpqua River, wetlands, Yaquina River}, author = {Emmett, Robert and Llans{\'o}, Roberto and Newton, Jan and Thom, Ron and Hornberger, Michelle and Morgan, Cheryl and Levings, Colin and Copping, Andrea and Fishman, Paul} } @book {25731, title = {Making Salmon: an Environmental History of the Northwest Fisheries Crisis}, year = {1999}, note = {An excellent examination of the history behind the factors that combine to kill salmon. A superb bibliography. }, pages = {421 p.}, publisher = {University of Washington Press}, organization = {University of Washington Press}, chapter = {421 p.}, address = {Seattle}, keywords = {abundance, agriculture, dams, depleted populations, environmental law and policy, general, hatcheries, historical, human impacts, industrial development, logging, mining, Pacific salmonid species (Oncorhynchus spp.)}, author = {Taylor, Joseph E. III} } @article {33401, title = {Status review of chinook salmon from Washington, Idaho, Oregon, and California}, volume = {no.35}, year = {1998}, note = {NOAA seems to have an earlier version of this report (their version, Dec. 1997) on their website as the source for the online copy. The team studying Chinook salmon felt that for the Oregon Coast this species is not in danger of extinction, nor thought to become extinct "in the forseeable future" (p.249). Appendix D gives the known history of hatchery releases. }, month = {1998, Feb.}, pages = {443 p.}, institution = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service}, address = {[Seattle, Wash.] }, keywords = {Alsea River, Chinook salmon = Oncorhynchus tshawytscha, Coos River, Coquille River, endangered species, environmental policy and law, general ecosystem description, genetics, hatcheries, historical, Kilchis River, life history information, Miami River, Millicoma River, natural resource management, Necanicum River, Nehalem River, Nestucca River, population biology, population count, Salmon River, salmonid species, Siletz River, Siuslaw River, statistics, Tillamook River, Trask River, Umpqua River, Wilson River, Yachats River, Yaquina River}, url = {https://repository.library.noaa.gov/view/noaa/3034}, author = {Myers, James M. and Kope, Robert G. and Bryant, Gregory J. and Teel, David J. and Lierheimer, Lisa J. and Wainwright, Thomas C. and Grant, W. Stewart and Waknitz, F. William and Neely, Kathleen and Lindley, Steven T. and Waples, Robin S.} } @mastersthesis {33321, title = {Contending with Risk in the Seafood Processing Industry: a Bioeconomic Portfolio Analysis of the Pacific Whiting Fishery}, year = {1997}, note = {Study of fish processing of whiting on the West Coast. Indicates possible mixes of products to reduce economic risk for seafood processors, and the order in which products should be processed to maximize profits. Interesingly, putting whiting processing off until the end of the fishing season maximized profits. Newport is the most important port in Oregon for this fishery. Masters thesis. Major professor was Gilbert Sylvia.}, pages = {105 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Agricultural and Resource Economics}, address = {Corvallis, Or.}, keywords = {commercial fisheries - groundfish, Pacific hake (whiting) = Merluccius productus, Port of Astoria, Port of Newport, seafood processing, theses}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/cf95jd91k}, author = {Tuininga, Chris R} } @article {33216, title = {General guidelines for using the sediment quality triad}, journal = {Marine Pollution Bulletin}, volume = {34}, number = {6}, year = {1997}, month = {1997}, pages = {368-372}, keywords = {chemical, community ecology, methodology, sediments, toxicity, water pollution}, author = {Chapman, Peter M. and Anderson, Brian and Carr, Scott and Engles, Virginia and Green, Roger and Hameedi, Jawed and Harmon, Michelle and Haverland, Pamela and Hyland, Jeff and Ingersoll, Chris and Long, Edward and Rodgers, John Jr. and Salazar, Michael and Sibley, Paul K. and Smith, Paul J. and Swartz, Richard C. and Thompson, Bruce and Windom, Herbert} } @article {33251, title = {Rate of tube building and sediment particle size selection during tube construction by the tanaid crustacean, Leptochelia dubia}, journal = {Estuaries}, volume = {20}, number = {3}, year = {1997}, month = {1997}, pages = {534-546}, keywords = {abundance, aquatic invertebrates, aquatic vegetation, bacteria, biological, crustaceans, hydrology, Idaho Flats, Oregon State University Hatfield Marine Science Center, physical, population biology, sediment data, size composition, tanaids, Yaquina Bay}, author = {Krasnow, Lynne D. and Taghon, Gary L.} } @article {33316, title = {The wave climate of the Pacific Northwest (Oregon and Wahington): a comparison of data sources}, journal = {Journal of Coastal Research}, volume = {13}, number = {2}, year = {1997}, month = {Spring_1997}, pages = {440-452}, keywords = {hydrology, physical, wave data, wave height, Yaquina Bay}, author = {Tilloston, Kevin J. and Komar, Paul D.} } @proceedings {33176, title = {Human intervention in Pacific Northwest coastal ecosystems}, volume = {no.11}, year = {1996}, note = {Timeline of major human events p.7. Charts show changes regarding dam construction, tidal marsh loss, deep riverine pool loss, salmon landings.}, month = {1998}, pages = {5-37}, publisher = {NOAA Coastal Ocean Office}, address = {Troutdale, Oregon}, keywords = {biological, coastal upwelling, Columbia River estuary, Coos River estuary, ecological values, ecosystem modeling, environmental policy and law, general, general ecosystem description, historical, human impacts, land use, physical, physical modifications, Yaquina Bay, Yaquina River, Yaquina River Basin}, url = {https://repository.library.noaa.gov/view/noaa/1668}, author = {Thom, Ronald M. and Brode, Amy B.}, editor = {McMurray, Gregory R. and Robert J Bailey} } @article {32996, title = {Monitoring of the Yaquina Bay entrance North jetty at Newport, Oregon: Summary and results}, volume = { no. 95-9}, year = {1995}, month = {July_1995}, institution = {U.S. Army Corps of Engineers Waterways Experiment Station}, address = {Vicksburg, MS}, keywords = {general, historical, human impacts, North Jetty, physical, physical modifications, wave height, Yaquina Bay}, url = {https://apps.dtic.mil/sti/pdfs/ADA299618.pdf}, author = {Hughes, Steven A. and Prickett, Terri L. and Tubman, Michael W. and Corson, William D. and U.S. Army. Corps of Engineers. Waterways Experiment Station ,} } @article {33076, title = {Status review of coho salmon from Washington, Oregon, and California}, volume = {no.24}, year = {1995}, note = {The Biological Review Team concluded that "coho salmon in this ESU are not at immediate risk of extinction but are likely to become endangered in the future if present trends continue." The Team noted that "spawning escapements have declined substantially during this century and may now be at less than 5\% of their abundance in the early 1900s." (p.128) }, pages = {258 p.}, institution = {U.S. National Marine Fisheries Service, Northwest Fisheries Science Center }, address = {Seattle, Wash.}, keywords = {Coho salmon = Oncorhynchus kisutch, Coos River, Coquille River, endangered species, environmental policy and law, general ecosystem description, genetics, hatcheries, historical, life history information, Miami River, natural resource management, Necanicum River, Nehalem River, Nestucca River, population biology, population count, Salmon River, salmonid species, Siletz River, Siuslaw River, statistics, Tillamook River, Umpqua River, Wilson River, Yaquina River}, url = {https://www.nwfsc.noaa.gov/assets/25/5585_06172004_123333_coho.pdf}, author = {Weitkamp, Laurie A. and Wainwright, Thomas C. and Bryant, Gregory J. and Milner, George B. and Teel, David J. and Kope, Robert G. and Waples, Robin S.} } @article {32926, title = {Defensive responses and palatability of specialist herbivores: Predation on NE Pacific ascoglossan gastropods}, journal = {Marine Ecology Progress Series}, volume = {105}, number = {1-2}, year = {1994}, month = {February_1994}, pages = {61-70}, keywords = {aquatic invertebrates, biological, community ecology, Coos River estuary, crustaceans, decapods, feeding behavior, fishes, gastropods, life history information, molluscs, sacoglossus species, Yaquina Bay}, url = {https://www.int-res.com/articles/meps/105/m105p061.pdf}, author = {Trowbridge, Cynthia D.} } @article {77201, title = {Lipid class and glycogen content of the lugworm Abarenicola pacifica in relation to age, growth rate and reproductive condition}, journal = {Marine Biology}, volume = {120}, year = {1994}, note = {How do animals allocate food supplies? If food is abundant, do animals store food for future needs, or do they use the abundant supplies to facilitate reproduction? In this study, the authors studied lipids and glycogen in the Pacific lugworm for a year, in order to account for seasonal variability and reproductive cycles. They did not find seasonal variations, but the data showed that storage lipids, especially triacylglycerides, {\textquotedblleft}were strongly elevated{\textquotedblright} when eggs were formed. {\textquotedblleft}We doubt that A. pacifica is ever food-limited in Yaquina Bay. The biochemical composition and nutritive value of surface sediments in Yaquina Bay change little throughout the year{\textellipsis}{\textquotedblright}(p.294)}, pages = {p.287-295}, keywords = {annelids, aquatic invertebrates, lipids, nutrition, Pacific lugworm = Abarenicola pacifica, polychaete worms, reproduction, Yaquina Bay}, author = {Taghon, Gary L. and Prahl, F. G. and Sparrow, M. and Fuller, C.M.} } @mastersthesis {32921, title = {Wave Climate and Storm Systems on the Pacific Northwest Coast}, year = {1994}, note = {Major professor was Paul D. Komar. }, month = {December_1994}, pages = {138 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {College of Oceanography}, address = {Corvallis, Or.}, keywords = {hydrology, physical, theses, wave data, wave height, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/1j92gb234}, author = {Tilloston, Kevin J.} } @mastersthesis {52026, title = {Late Quaternary Crustal Deformation on the Central Oregon Coast as Deduced from Uplifted Wave-Cut Platforms}, year = {1993}, note = {This thesis examines marine terraces on the central Oregon Coast to see what they can tell us about uplift and deformation processes in the recent geologic past. {\textquotedblleft}The primary purpose of this project is to study the characteristics, age, and distribution of uplifted marine terraces along 65 km of the central Oregon coast between Otter Rock and Searose beach. . . . Quaternary deformation of marine terraces is used to determine the rate and variability of uplift.{\textquotedblright} (p.1) Includes geologic maps.}, pages = {70 p.}, school = {Western Washington University}, type = {Masters Thesis}, edition = {M. S.}, address = {Bellingham, Wash.}, keywords = {Alsea Bay, earthquakes, geology, Moolach Beach, Otter Rock, paleosciences, sea level, Searose Beach, soils, theses, Yachats River, Yaquina Bay}, author = {Ticknor, Robert} } @article {32831, title = {Local and regional abundance patterns of the ascoglossan (= sacoglossan) opisthobranch Alderia modesta (Loven, 1844) in the northeastern Pacific.}, journal = {The Veliger}, volume = {36}, number = {4}, year = {1993}, month = {1993}, pages = {303-310}, keywords = {abundance, Alderia modesta, aquatic invertebrates, biological, Coos River estuary, molluscs, population biology, Yaquina Bay}, author = {Trowbridge, Cynthia D.} } @article {32826, title = {Population structure of two common species of ascoglossan (=sacoglossan) opisthobranchs on the central coast of Oregon, USA}, journal = {The Veliger}, volume = {36}, number = {2}, year = {1993}, month = {April_1993}, pages = {99-106}, keywords = {Alderia modesta, aquatic invertebrates, biological, molluscs, population biology, Yaquina Bay}, author = {Trowbridge, Cynthia D.} } @book {32366, title = {Species profiles: life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): coho salmon}, series = {Biological Report (Washington, D.C.)}, volume = {no.82-11.86}, year = {1989}, month = {1989}, pages = {21 p.}, publisher = {Coastal Ecology Group, Waterways Experiment Station, U.S. Army Corps of Engineers}, organization = {Coastal Ecology Group, Waterways Experiment Station, U.S. Army Corps of Engineers}, address = {Vicksburg, Miss.}, keywords = {cutthroat trout = Oncorhynchus clarki, geographic distribution, habitats, life history information, logging, Nehalem River, Nestucca River, taxonomy, Trask River, water quality, water temperature}, url = {https://webharvest.gov/peth04/20041023214018/http://www.nwrc.usgs.gov/wdb/pub/0176.pdf}, author = {Pauley, Gilbert B. and Oshima, Kevin and Bowers, Karen L. and Thomas, G. L.} } @book {83293, title = {Species profiles: life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): sea-run cutthroat trout}, series = {Biological Report (Washington, D.C.)}, volume = {no.82-11.86}, year = {1989}, month = {1989}, pages = {21 p.}, publisher = {Coastal Ecology Group, Waterways Experiment Station, U.S. Army Corps of Engineers}, organization = {Coastal Ecology Group, Waterways Experiment Station, U.S. Army Corps of Engineers}, address = {Vicksburg, Miss.}, keywords = {cutthroat trout = Oncorhynchus clarki, geographic distribution, habitats, life history information, logging, Nehalem River, Nestucca River, taxonomy, Trask River, water quality, water temperature}, url = {https://webharvest.gov/peth04/20041023214018/http://www.nwrc.usgs.gov/wdb/pub/0176.pdf}, author = {Pauley, Gilbert B. and Oshima, Kevin and Bowers, Karen L. and Thomas, G. L.} } @article {32246, title = {Evaluation of the Economic Impacts Due to the Offshore Fisheries Supported by Salmon Hatcheries on the Oregon Coast}, year = {1988}, note = {Meeting held November 15, 1988.}, month = {November, 15_198}, pages = {25 p.}, institution = {Oregon Coastal Management Association}, address = {[Newport, Or.]}, keywords = {biological, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, hatchery salmonids, Oregon Aqua-Foods, recreational fisheries - salmon}, author = {Tobolski, Jeffrey J. and Oregon Coastal Management Association,} } @article {32001, title = {Pacific Coast Hindcast Phase II Wave Information}, year = {1987}, note = {Also called WIS Report 16.}, month = {May_1987}, pages = {413 p.}, institution = {U.S. Army Corps of Engineers. Coastal Engineering Research Center}, address = {Vicksburg, MS}, keywords = {physical, wave height data}, url = {https://apps.dtic.mil/sti/trecms/pdf/ADA182795.pdf}, author = {Corson, William D. and Abel, C. E. and Brooks, R. M. and Farrar, P. D. and Groves, B. J. and Payne, J. B. and McAneny, D. S. and Tracy, B. A. and U.S. Army. Corps of Engineers. Coastal Engineering Research Center,} } @article {77181, title = {Paleogeographic evolution of the United States Pacific Northwest during Paleogene time}, journal = {Canadian Journal of Earth Sciences}, volume = {24}, number = {8}, year = {1987}, note = {The period from 66-23.03 million years ago is known as the Paleogene. It is the time when mammals experienced rapid evolution. So did the Pacific Northwest. This article summarizes the recent evolution of the region, from plate collisions to vulcanism, from faulting to sedimentation.}, month = {08/1987}, pages = {p.1652-1667}, keywords = {general, geology, Pacific Northwest, paleosciences, Yachats Basalt}, author = {Heller, Paul L. and Tabor, Rowland W. and Suczek, Christopher A.} } @article {31966, title = {Isolation of non-O1 Vibrio cholerae Serovars from Oregon coastal environments}, journal = {Applied and Environmental Microbiology}, volume = {51}, number = {2}, year = {1986}, month = {February_1986}, pages = {p.444-445}, keywords = {biological, salinity, Vibrio, water temperature, Yaquina Bay}, author = {Tison, D.L. and Nishibuchi, M. and Seidler, R.J. and Siebling,R.J.} } @article {31961, title = {Microcomputer control of an estuarine research mesocosm facility}, journal = {Journal of Microcomputer Applications}, volume = {9}, year = {1986}, month = {July_1986}, pages = {p.167-177}, keywords = {biological, ecosystem modeling, Oregon State University Hatfield Marine Science Center, solar radiation}, author = {Thomson, B.E. and Worrest, R.C.} } @proceedings {31796, title = {Evaluation of a seismometer gage for coastal wave measurements.}, volume = {2}, year = {1985}, pages = {p. 713-717}, address = {San Diego, CA}, keywords = {Coquille River estuary, physical, wave data, wave height, Yaquina Bay}, author = {Thompson, Edward F. and Chesser, Stephen A. and Smith, Jane M.} } @article {31801, title = {Evaluation of seisometer wave gage and comparative analysis of wave data at Yaquina and Coquille Bays, Oregon}, volume = {no.85-12}, year = {1985}, institution = {U.S. Army Corps of Engineers. Waterways Experiment Station}, address = {Vicksburg, MS}, keywords = {Coquille River estuary, methodology, physical, wave data, wave height data, Yaquina Bay}, url = {https://apps.dtic.mil/dtic/tr/fulltext/u2/a162940.pdf}, author = {Thompson, Edward F. and Howell, Gary L. and Smith, Jane M. and U.S. Army. Corps of Engineers. Waterways Experiment Station ,} } @book {82166, title = {Native American religious practices and uses in Western Oregon.}, series = {University of Oregon Anthropological Papers.}, volume = {no.31}, year = {1984}, note = {This publication examines traditional religious practices of Native Americans in Western Oregon. It moves on to address contemporary beliefs and concludes with a survey of religious sites. Formerly available online, a .pdf of this out-of-print publication is available by writing the University of Oregon Museum of Natural and Cultural History. https://mnch.uoregon.edu/uo-anthropological-papers .}, pages = {144 p.}, chapter = {144 p.}, address = {Eugene, Or.}, keywords = {Native Americans, anthropology, religion, Tillamook Indians, Alsea Indians, Yaquina Indians, Coos Indians, Lower Umpqua Indians, Siuslaw Indians, Kalapuya Indians, Cascade Head, Cape Perpetua, Red Ochre Quarry, Cook{\textquoteright}s Chasm, Smith River, Mary{\textquoteright}s Peak,}, author = {Beckham, Stephen Dow and Toepel, Kathryn Ann and Minor, Rick} } @article {31256, title = {Cultural resource overview of the Siuslaw National Forest, western Oregon}, volume = {7}, number = {1}, year = {1982}, note = {A final report submitted to the Siuslaw National Forest}, month = {1982}, institution = {Heritage Research Associates}, keywords = {Alsea River estuary, general, historical, Siletz River estuary, Yaquina River, Yaquina River Basin}, author = {Beckham, Stephen Dow and Toepel, Kathryn Anne and Minor, Rick} } @booklet {31036, title = {Compendium of Current Marine Studies in the Pacific Northwest}, year = {1980}, note = {Published in 4 volumes from 1977-1980. Study descriptions involving Yaquina Bay are tagged}, month = {1980}, publisher = {Oceanographic Institute of Washington}, address = {[Seattle, WA]}, keywords = {biological, chemical, geological, physical, Yaquina Bay}, author = {Tait, Pamela L. (ed.)} } @article {30971, title = {Cultural resource overview of BLM lands in northwestern Oregon : archaeology, ethnography, history}, volume = {no.20}, year = {1980}, note = {Good resource on prehistoric and historic culture of the region. Yaquina and Alsea peoples are grouped together (p.65-71), with more emphasis on the Alsea. A .pdf of this volume is available. Email mnchaccounting@uoregon.edu for access. }, pages = {198 p.}, institution = {University of Oregon. Dept. of Anthropology}, address = {Eugene, Or.}, keywords = {Alsea River, anthropology, archeology, historical, Native Americans, Salmon River, Tillamook Bay, Yaquina River}, author = {Minor, Rick and Beckham, Stephen Dow and Lancefield-Steeves, Phyllis E. and Toepel, Kathryn Anne}, editor = {Aikens, C. Melvin} } @article {30821, title = {Evidence by electron micrographs for a high incidence of bacteriophage particles in the waters of Yaquina Bay, Oregon: ecological and taxonomical implications}, journal = {Applied and Environmental Microbiology}, volume = {37}, number = {4}, year = {1979}, note = {Slide photographs}, month = {1979}, pages = {774-778}, keywords = {bacteria, biological, nutrient cycles, seafood processing, water pollution, Yaquina Bay}, url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC243295/pdf/aem00208-0116.pdf}, author = {Torrella, Francisco and Morita, Richard Y.} } @mastersthesis {30826, title = {Life History of the Snake Prickleback Lumpenus sagitta Wilimovsky, 1956}, volume = {M.S.}, year = {1979}, note = {Major professor was Howard F. Horton.}, pages = {64 p.}, school = {Oregon State University}, type = {Masters Thesis}, address = {Corvallis, Or.}, keywords = {age composition, diet, feeding behavior, Hatfield Marine Science Center, life history information, reproductive behavior, salinity, Snake prickleback = Lumpenus sagitta, theses, water temperature, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/4q77ft80d}, author = {Tresierra-Aguilar, Alvaro} } @book {30486, title = {Yaquina Bay 1778-1978}, year = {1978}, note = {Reprinted in 1979 by the Lincoln County Historical society.}, month = {[1978]}, pages = {77 p.}, publisher = {Oldtown Printers}, organization = {Oldtown Printers}, address = {Waldport, Or.}, keywords = {general, historical, Yaquina Bay, Yaquina River, Yaquina River Basin}, author = {Castle, Darlene and Eddleman, Brenda and Hughes, Meg and Hughes, Riley and Thompson, Paul} } @article {30351, title = {Neoplastic disease in bivalve mollusks from Oregon estuaries with emphasis on research on proliferative disorders in Yaquina Bay oysters}, journal = {Annals of the New York Academy of Sciences}, volume = {298}, year = {1977}, month = {September_1977}, pages = {356-373}, keywords = {Alsea River estuary, aquatic invertebrates, biological, bivalves, blue mussel=Mytilus edulis, Idaho Point, molluscs, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Oregon State University Hatfield Marine Science Center, Oysterville, physiology, Sawyer{\textquoteright}s Landing, shellfish disease, The Bend, Tillamook estuary, Winant, Yaquina Bay}, author = {Mix, Michael C. and Pribble, H. James and Riley, Ronald T. and Tomasovic, Stephen P.} } @article {30076, title = {Oregon coast shoreline changes due to jetties}, journal = {Journal of the Waterways, Harbors and Coastal Engineering Division}, volume = {102}, number = {WW1}, year = {1976}, month = {Feb_1976}, pages = {p.13-30}, keywords = {computer programs, erosion, geological, North Jetty, sediments, South Jetty}, author = {Komar, Paul D. and Lizarraga-Arciniega, Jose ROman and Terich, Thomas A.} } @mastersthesis {29776, title = {Chemical Communication and Chemoreception in the Dungeness Crab, Cancer magister, and the Lined Shore Crab, Pachygrapsus crassipes}, year = {1974}, note = {Major professor was Austin W. Pritchard. }, month = {March_1974}, pages = {119 p.}, school = {Oregon State Unversity}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Zoology}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, bioassay, biological, chemical, crustaceans, decapods, Dungeness crab = Metacarcinus magister (Cancer magister), Marine Science Center Dock, physiology, striped shore crab = Pachgrapsus crassipes, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/th83m153f}, author = {Takahashi, Francis T., Jr.} } @article {29781, title = {Fish and Wildlife Resources: Oregon Coastal Zone}, year = {1974}, note = {Map packet. "Federal Aid to Fish Restoration, completion report. Fisheries stream flow requirements, project F-69-R-8, job number 15."}, month = {October_1974}, pages = {114 p.}, institution = {SRG Partnership}, address = {Portland, Or.}, keywords = {abundance, Alsea River, birds, Chinook salmon = Oncorhynchus tshawytscha, chum salmon = Oncorhynchus keta, Coho salmon = Oncorhynchus kisutch, commercial fisheries, cutthroat trout = Oncorhynchus clarki, ecological values, economics, fishes, geographical distribution, historical, human impacts, hydrology, life history information, Pacific salmonids=Oncorhynchus species, physical modifications, recreational fisheries, reproductive behavior, Salmon River, Siletz River, Siltcoos Lake, Siuslaw River, steelhead trout = Oncorhynchus mykiss, Tahkenitch Lake, temporal distribution, terrestrial mammals, Yachats River, Yaquina River}, author = {Thompson, Ken and Snow, Dale and Oregon. Wildlife Commission, and Oregon. Fish Commission and Oregon. Coastal Conservation and Development Commission,} } @article {29541, title = {Historical \& Archaeological Site Inventory}, year = {1973}, note = {"Preliminary Report - For Review Only." "This document is an initial inventory of major historical and archaeological sites along the Oregon Coast prepared for OCC\&DC by Stephen Dow Beckham, Associate Professor of History at Linfield College in McMinnville, Oregon. The report is a discussion draft and is being distributed to various individuals, groups and organizations for review and comment." }, month = {March_1973}, pages = {72 p.}, institution = {Oregon Coastal Conservation \& Development Commission}, address = {Florence, Or.}, keywords = {archeology, general, historical, Yaquina Bay Lighthouse}, url = {https://www.govinfo.gov/content/pkg/CZIC-f876-h57-1973/html/CZIC-f876-h57-1973.htm}, author = {Ternyik, Wilbur E. and Oregon. Coastal Conservation and Development Commission,} } @article {29216, title = {The biochemical analysis of some estuarine phytoplankton species. I. Fatty acid composition}, journal = {Journal of Phycology}, volume = {8}, number = {3}, year = {1972}, month = {1972}, pages = {p.211-216}, keywords = {aquatic vegetation, biological, chemical, physiology, phytoplankton, Yaquina Bay}, author = {DeMort, Carole L. and Lowry, Robert and Tinsley, Ian and Phinney, Harry K.} } @article {29121, title = {The development of forecast techniques for wave and surf conditions over the bars in the Columbia River mouth and at the entrance to Yaquina Bay}, volume = {no.71-9}, year = {1971}, month = {[1971]}, pages = {26 p.}, institution = {Department of Oceanography, Oregon State University}, address = {Corvallis, Or.}, keywords = {Columbia River estuary, physical, Yaquina Bay Bar}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/4b29b720x}, author = {Quinn, William H. and Enfield, David B. and Techniques Development Laboratory,} } @mastersthesis {29156, title = {An Ecological Study of Diatomovora amoena, an Interstitial Acoel Fatworm, in an Etuarine Mudflat on the Central Coast of Oregon}, year = {1971}, note = {Major professor was Dr. J. J. Gonor. }, month = {December_1971}, pages = {185 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Zoology}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, biological, Diatomovora amoena, estuarine dynamics, hydrology, Idaho Flats, physiology, platyhelminthes, salinity data, sediments, theses, tidal data, water temperature data, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/pr76f6431}, author = {Thum, Alan B.} } @article {28891, title = { Inshore sea surface temperature and salinity conditions at Agate Beach, Yaquina Bay and Whale Cove, Oregon, in 1970: a technical report to the Office of Naval Research}, volume = {no.45}, year = {1970}, note = {Publication also numbered as no. 70-44 in the series Reference (Oregon State University. Dept. of Oceanography).}, month = {November_1970}, pages = {30 p.}, institution = {Oceanography Department, Oregon State University}, address = {Corvallis, Or.}, keywords = {Agate Beach, physical, salinity data, tidal currents, water temperature data, Whale Cove, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/d791sh47x}, author = {Gonor, Jefferson J. and Thum, Alan B. and Elvin, David} } @article {28886, title = {Sea surface temperature and salinity conditions in 1969 at Agate Beach and Yaquina Bay, Oregon. A Technical Report to the Office of Naval Research}, volume = {no.39}, year = {1970}, note = {Also numbered into the Department{\textquoteright}s Reference series: Reference (Oregon State University. Dept. of Oceanography) ; 70-1.}, month = {February_1970}, pages = {19 p.}, institution = {Oceanography Department, Oregon State University}, address = {Corvallis, OR}, keywords = {Agate Beach, physical, salinity data, tidal currents, water temperature data}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/d791sh47x}, author = {Gonor, Jefferson J. and Thum, Alan B.} } @article {51356, title = {Respiratory adaptations of two burrowing crustaceans, Callianassa californiensis and Upogebia pugettensis (Decapoda, Thalassinidea)}, journal = {Biological Bulletin}, volume = {136}, year = {1969}, note = {Ghost shrimp and mud shrimp taken from Yaquina Bay were studied. Both species have low metabolic rates and {\textquotedblleft}are remarkably tolerant to anoxic conditions.{\textquotedblright} (p.283) This may have implications for global warming and an expected higher frequency of anoxic events.}, month = {1969, Apr.}, pages = {p.274-287}, keywords = {Coquille Point, Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), Mud shrimp = Upogebia pugettensis, oxygen, physiology, respiration, Yaquina Bay}, author = {Thompson, Rogene Kasparek and Pritchard, Austin W.} } @article {28651, title = {The tsunami of the Alaskan earthquake, 1964: engineering evaluation}, volume = {no.25}, year = {1968}, note = {May, 1968.}, pages = {471 p.}, keywords = {coastal hazards, physical, wave height data, Yaquina Bay}, url = {https://apps.dtic.mil/sti/pdfs/AD0683491.pdf}, author = {Wilson, Basil W. and Torum, Alf and U.S. Army. Corps of Engineers. Coastal Engineering Research Center,} } @article {28456, title = {Persistence of carbaryl in the marine estuarine environment. Chemical and biological stability in aquarium systems}, journal = {Journal of Agricultural and Food Chemistry}, volume = {15}, year = {1967}, month = {Jan.-Feb.1967}, pages = {p.148-156}, keywords = {amphipods, biological, bivalves, chemical, crustaceans, Oregon State University Hatfield Marine Science Center, sediments, segmented worms, Sevin}, author = {Karinen, J.F. and Lamberton. J.G. and Stewart, Nelson E. and Terriere, L.C.} } @mastersthesis {28516, title = {Respiratory Adaptations of Two Macrurousanomuran Mud Shrimps, Callianassa californiensis and Upogebia pugettensis (Decapoda, Thalassinidea)}, year = {1967}, note = {Major professor was A.W. Pritchard. Master{\textquoteright}s thesis.}, month = {March_1967}, pages = {63 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Zoology}, address = {Corvallis, Or.}, keywords = {biological, blue mud shrimp=Upogebia pugettensis, Coquille Point, Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), Idaho Flats, physiology, Sally{\textquoteright}s Slough, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/s7526f764}, author = {Thompson, Rogene K.} } @mastersthesis {28076, title = {An Exploratory Investigation of the Embryonic and Larval Stages of the Bay Mussel, Mytilus edulis L., as a Bioassay Organism}, year = {1961}, note = {Major professor was R.E. Dimick. Masters thesis.}, month = {April_1961}, pages = {51 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fish and Game Management}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, bioassay, biological, bivalves, blue mussel=Mytilus edulis, chemical, developmental stages, life history information, molluscs, physiology, pulp mill effluent, sulphate, sulphite, theses, toxicity, water pollution, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/jm214s113}, author = {Toner, Richard C.} } @article {40826, title = {Observations on horseclams of the 1949-50 set in Yaquina Bay}, volume = {no.21}, year = {1950}, note = {This report contains a series of individual reports within it. The main report continues growth and aging studies on fat gaper clams in Yaquina Bay. This document also includes a report on other Fish Commission activities on the Coast, a summary of razor clam research, the beginning of a survey of temperatures and salinities in rivers, bays and coastal waters, and a report on crab tagging methodology.}, pages = {47 p.}, keywords = {Alsea Bay, aquatic invertebrates, bivalves, chlorine, crustaceans, Dungeness crab = Metacarcinus magister (Cancer magister), Gaper clam = Tresus capax, hydrography, molluscs, natural resource management, Necanicum River estuary, Netarts Bay, Pacific razor clam = Siliqua patula, salinity, Sally{\textquoteright}s Bend, Siletz Bay, spatial distribution, temporal distribution, Tillamook Bay, water temperature, Yaquina Bay}, issn = {no.21}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/2b88qd055}, author = {Tollefson, Roger and Marriage, Lowell D. and Twahy, Donald and Wilkes, Stanley and Woelke, Charles and Oregon. Fish Commission} } @article {37816, title = {Ghost shrimp, weights of crabs {\textendash}- Oregon landings, souvenir crabs}, volume = {no.16}, year = {1949}, note = {This document is in three parts: a report on the ghost shrimp fishery, elucidation of a method to tax commercial crab landings, and a description of a commercial enterprise that was catching small shore crabs and embedding them in plastic for sale as tourist souvenirs (the {\textquotedblleft}badge{\textquotedblright} of the Newport Crab Festival). Gives contemporary methods of harvesting ghost shrimp, and lists the number of commercial fishers in Alsea and Siletz bays. Gives Dungeness crab landings for various areas of the state. }, pages = {15 p.}, keywords = {Alsea Bay, aquatic invertebrates, commercial fisheries {\textendash} shellfish, Coos Bay, crustaceans, Dungeness crab = Metacarcinus magister (Cancer magister), Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), natural resource management, Netarts Bay, Oregon shore crab = Hemigrapsus oregonensis, Purple shore crab = Hemigrapsus nudus, Siletz Bay, Tillamook Bay, Yaquina Bay}, issn = {no.16}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/1544bq05s}, author = {Tollefson, Roger and Marriage, Lowell D. and Oregon. Fish Commission} } @article {27661, title = {Investigation of proposed log boom on Yaquina River}, volume = {no.9}, year = {1949}, note = {Reports on an investigation of a request by the C.D. Johnson Lumber Company to construct a log boom two miles below Toledo on the Yaquina River. Local residents were concerned that the boom would damage clam beds. "Since it seems inconceivable that a log boom over the flat would tail to completely destroy the bed, granting of permission for such a boom is hereby opposed tram the standpoint of the clams involved." Includes a hand-drawn map of the area.}, pages = {5 p.}, keywords = {environmental policy and law, habitat conservation, logging, Softshell clam = Mya arenaria, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/sn009z526}, author = {Tollefson, Roger and Marriage, Lowell D. and Oregon. Fish Commission. Shellfish Program} } @article {38621, title = {Crab fishery and soft-shell status {\textendash} Area II: South of Cascade Head, July 31-August 6, 1948}, volume = {no.12}, year = {1948}, note = {Lists crab fishing boats in selected ports, including Newport and Winchester Bay, giving owners, names of vessels and number of pots fished. Gives numbers of crab pots out for the central and south coast. Gives percentage of soft-shell crabs by date and area. }, pages = {5 p.}, keywords = {Alsea Bay, biological, commercial fisheries {\textendash} shellfish, Coos Bay, Dungeness crab = Metacarcinus magister (Cancer magister), Elk River, natural resource management, Port Orford, Rogue River estuary, Umpqua River estuary, Winchester Bay, Yaquina Bay}, issn = {no.12}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/x346d508p}, author = {Tollefson, Roger and Marriage, Lowell D. and Oregon. Fish Commission} } @book {13411, title = {Lincoln County lore, from the Journal of Lieut. Theodore Talbot, U.S.A., on his journey through Lincoln County and along the Oregon coast in 1849}, series = {Publication (Lincoln County Historical Society (Lincoln County, Or.))}, volume = {no.1}, year = {1948}, note = {Journal of Lt. Theodore Talbot, describing a journey to Lincoln County to examine the "Alcea River and the country adjacent" in the summer of 1849. }, pages = {86 p.}, publisher = {Lincoln County Historical Society}, organization = {Lincoln County Historical Society}, address = {Newport, OR}, keywords = {Alsea Bay, forest fires, historical, Native Americans, Pacific smelt = Thaleichthys pacificus, Siletz River, terrestrial vegetation, Yaquina Bay}, isbn = {0960296808}, url = {https://ir.library.oregonstate.edu/concern/defaults/bz60cx72m}, author = {Talbot, Theodore and Lincoln County Historical Society,} } @article {27631, title = {Present state of bay clams in Oregon}, journal = {Research Briefs. Fish Commission of Oregon}, volume = {1}, number = {2}, year = {1948}, note = {Drawings of clams}, month = {August_1948}, pages = {p.3-9}, keywords = {Alsea River estuary, aquatic invertebrates, biological, bivalves, butter clam=Saxidomus giganteus, commercial fisheries - shellfish, Coos River estuary, fat gaper=Tresus capax, flat-tip piddock=Penitella penita, molluscs, natural resource management, Nehalem River estuary, Nestucca River estuary, Netarts estuary, Nuttall cockle=Clinocardium nuttallii, Pacific littleneck=Leukoma staminea, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, Salmon River estuary, Siletz River estuary, softshell clam=Mya arenaria, Tillamook estuary, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/3f462600t}, author = {Tollefson, Roger} } @article {76701, title = {Proposed regulations of the clam fishery of the State of Oregon}, volume = {no.11-A}, year = {1948}, note = {By 1948, Oregon{\textquoteright}s clamming regulations spilled over into fifty-one different sections of administrative rules. They were {\textquotedblleft}cumbersome{\textquotedblright} at best. The previous legislative session had repealed many outdated laws but kept them in effect until the Fish Commission could study the issue and propose new regulations. The Commission had been studying the issue for a little more than a year in Tillamook, Yaquina and Coos bays and in this document gives its first recommendations, primarily focusing on the gaper, or {\textquotedblleft}horse,{\textquotedblright} clam fishery. Among other recommendations, the Fish Commission proposed closing Nestucca Bay to commercial clam digging.}, pages = {10 p.}, institution = {Fish Commission of Oregon,}, keywords = {aquatic invertebrates, bivalves, clams, Coos Bay, environmental law and policy, Gaper clam = Tresus capax, mollusks, natural resources management, Nestucca Bay, shellfish, Tillamook Bay, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/2v23vv147}, author = {Tollefson, Roger and Oregon. Fish Commission,} } @article {27636, title = {Report on public hearing on Yaquina River, Oregon in respect to flood control : held at Toledo, Oregon - June 3, 1948 under auspices of Department of Army, Corps of Engineers}, volume = {no.2}, year = {1948}, note = {Report of a meeting about two diking districts on the Yaquina River. Tide gates had failed and brackish water was flowing into areas where cattle were grazing, to the dismay of some local farmers.}, pages = {1 p.}, keywords = {agriculture, tides, water quality, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/z603qz17c}, author = {Tollefson, Roger and Oregon. Fish Commission. Shellfish Program} } @article {77191, title = {Pacific Oyster Seed}, volume = {no.4}, year = {1947}, note = {{\textquotedblleft}In the spring of 1947, importation of Pacific oyster seed from Japan was resumed for the first time since before the war. Major plantings of this seed were made in Tillamook and Coos Bay with additional trial plantings in various other localities in Oregon.{\textquotedblright} (p.1) Included in the shipment of Pacific oyster seed (Crassostrea gigas) was a small trial shipment of the highly desirable Kumamoto oyster (Crassostrea sikamea), which was planted in Tillamook and Yaquina bays. This is the first known planting of Kumamoto oysters in Oregon.}, pages = {3 p.}, keywords = {aquaculture, bivalves, Coos Bay, Kumamoto oyster = Crassostrea sikamea, molluscs, oysters, Pacific oyster = Crassostrea gigas, Tillamook Bay, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/zc77sq87k}, author = {Tollefson, Roger and Oregon. Fish Commission,} } @article {40831, title = {The Yaquina Bay clam fishery: preliminary report}, volume = {no.2}, year = {1947}, note = {{\textquotedblleft}Starting the first part of July, 1947, the Fish Commission of Oregon set up a field station at Newport for the purpose of conducting research on shellfish.{\textquotedblright} (p.1) The status of clams in Yaquina Bay was the first topic studied. This paper gives the conditions of clam beds, lists species found, gives preliminary age composition and recruitment data, and notes concern about the intensity of the fishery and the possibility of overfishing. Includes graphs and a hand-drawn map. Note: the geographic feature referred to as {\textquotedblleft}Point Virtue{\textquotedblright} is now known as Idaho Point.}, pages = {10 p.}, keywords = {aquatic invertebrates, bivalves, Butter clam = Saxidomus giganteus, Cockle clam = Clinocardium nuttallii, commercial fisheries {\textendash} shellfish, depleted populations, Gaper clam = Tresus capax, Hinton Point, Idaho Flats, Idaho Point, King Slough, Littleneck clam = Leukoma staminea, McLean Point, molluscs, natural resource management, recreational fisheries {\textendash} shellfish, Sally{\textquoteright}s Bend, Softshell clam = Mya arenaria, Yaquina Bay, Yaquina Bay Bridge}, issn = {no.2}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/8c97kq88b}, author = {Tollefson, Roger and Oregon. Fish Commission} } @article {27586, title = {Mineralogical and physical composition of the sands of the Oregon Coast form Coos Bay to the mouth of the Columbia River}, volume = {30}, year = {1946}, note = {Excellent data}, month = {1946}, pages = {64 p.}, keywords = {coastal dunes, geological, Idaho Flats, physical, sediment data, Yaquina Bay}, url = {https://www.oregongeology.org/pubs/B/B-030.pdf}, author = {Twenhofel, W.H.} }