@article {83251, title = {Northwest Forest Plan: The first 25 years (1994-2018): Watershed condition status and trends}, volume = { no.PNW-GTR-1010}, year = {2023}, note = {"This report describes status and trends in watershed condition across the Northwest Forest Plan (NWFP) area over the first 25 years since its inception in 1994. The program charged with this task is the Aquatic and Riparian Effectiveness Monitoring Program (AREMP), which has assembled information from field data collection, spatial datasets, and a host of landscape models to evaluate the status and trends in aquatic resources in streams and watersheds. Field data included hydrologic measurements (stream wetted widths and temperatures), geomorphic responses (instream wood and sediment), and biological responses (macroinvertebrates and aquatic organism passage){\textquotedblright} (from the Abstract). Forest manager{\textquoteright}s efforts have shown incremental progress in improving aquatic conditions in Federal forests, but in a context of climate change. More planning and adaptions in monitoring methods are warranted.}, month = {2023, Jun.}, pages = {165 p.}, institution = {Pacific Northwest Research Station}, address = {Portland, Or. }, keywords = {climate, environmental law and policy, erosion, general, hydrology, landslides, large woody debris, logging, Pacific Northwest, precipitation, riparian areas, sediment, terrestrial vegetation, water temperature}, url = {https://www.fs.usda.gov/pnw/pubs/pnw_gtr1010.pdf }, author = {Dunham, Jason and Hirsch, Christine and Gordon, Sean and Flitcroft, Rebecca and Chelgren, Nathan and Snyder, Marcia and Hockman-Wert, David and Reeves, Gordon and Andersen, Heidi and Anderson, Scott and Battaglin, William and Black, Tom and Brown, Jason and Claeson, Shannon and Hay, Lauren E. and Heaston, Emily and Luce, Charles and Nelson, Nathan and Penn, Colin and Raggon, Mark and Pacific Northwest Research Station.} } @article {83272, title = {Western Aquatic Invasive Species Resource Center}, year = {2023}, note = {{\textquotedblleft}This website reflects the collaborative efforts of many states and provinces in the western United States and other regions of the country to prevent the introduction and spread of aquatic invasive species by focusing on their pathways of introduction, sharing information and best management practices, achieving consensus on protocols and standards as well as regulations, developing and implementing outreach campaigns to raise public awareness, and providing training.{\textquotedblleft} (home page) A rich, current resource. }, publisher = {Pacific States Marine Fisheries Commission}, chapter = {2013 Jul.7}, address = {Portland, Or.}, keywords = {introduced species}, url = {https://www.westernais.org/}, author = {Pacific States Marine Fisheries Commission,.,} } @article {83182, title = {A doubled down invasion of the northeast Pacific by the Asian mud shrimp, Upogebia major, and its coevolved bopyrid isopod parasite, Orthione griffenis}, journal = {Aquatic Invasions}, volume = {16}, number = {4}, year = {2021}, note = {The blue mud shrimp, Upogebia pugettensis, is known to be an ecosystem engineer, turning over and re-suspending, and aerating sediments (bioturbation), burrowing, and deposit feeding. The mud shrimp affects organic structure, nutrients, and the grain size of sediments in mudflats. Some of this activity creates difficulties for oyster growers, causing the application of pesticides in oyster growing areas in the 1950s. It may be that the changes in the ecosystem caused by introduced oysters and pesticides opened the doors for subsequent invasions. In 1999, a parasitic isopod was discovered to be infecting the native mud shrimp, and effectively sterilizing the shrimp. A related species, the Asian mud shrimp. Upogebia major, is less susceptible to the parasite, and has begun to fill in spaces formerly occupied by the blue mud shrimp. While this article is concerned with mud shrimp populations in California, the dynamics discussed are relevant to Oregon estuaries. If the ways our estuaries are engineered changes thanks to the double invasion, the way we manage our estuaries will also have to change. This is an open-access article, and it has also been re-printed as no.21-021 in the ORESU-R series.}, month = {2021}, pages = {p.721{\textendash}749}, keywords = {Alsea Bay, Asian mud shrimp Upogebia major, bioturbation, community ecology, Coos Bay, depleted populations, Griffen{\textquoteright}s isopod = Orthione griffensis, introduced species, Mud shrimp = Upogebia pugettensis, natural resource management, Nestucca Bay, Netarts Bay, Upogebia macginitieorum, Yaquina Bay}, doi = {https://doi.org/10.3391/ai.2021.16.4.09}, url = {https://ir.library.oregonstate.edu/concern/articles/k643b826b }, author = {Chapman, John W. and Li, Jingchun and McGowan, Michael F. and Breitenstein, Ralph A. and Appy, Ralph and Hieb, Kathryn A. and Piotrowski, Christina N. and Elder, Leanne E.} } @article {83058, title = {Exploring biophysical linkages between coastal forestry management practices and aquatic bivalve contaminant exposure}, journal = {Toxics }, volume = {9}, number = {3}, year = {2021}, note = {Current forestry management practices are not doing very well at keeping herbicides and pesticides within the boundaries of the forest. In this important article, the authors describe a study of bivalves to look for contamination from pesticides and other chemicals used in forestry. They found pesticides in 38\% of bivalves sampled, with some watersheds more contaminated than others, and with seasonal variations. The authors mildly note, {\textquotedblleft}Details about types and levels of exposure provide insight into effectiveness of current forest management practices in controlling transport of forest-use pesticides{\textquotedblright} (from the Abstract). Good data visualization. This is an Open-Access article.}, month = {2021, Mar.}, pages = {article 46, 25 p. }, keywords = {agriculture, Alsea River, aquatic invertebrates, bivalves, clams, commercial fisheries - shellfish, Coos Bay, forestry, fungicides, herbicides, human impacts, metabolism, molluscs, mussels, Nehalem River, Nestucca River, oysters, Pacific oyster = Crassostrea gigas, pesticides, precipitation, recreational fisheries {\textendash} shellfish, Siletz River, Siuslaw River, Smith River (Umpqua), Softshell clam = Mya arenaria, stress, toxicity, Western pearl mussel = Margaritifera falcata, Yaquina River}, doi = {https://doi.org/10.3390/toxics9030046}, url = {https://www.mdpi.com/2305-6304/9/3/46 }, author = {Scully-Engelmeyer, Kaegan and Granek, Elise F. and Nielsen-Pincus, Max and Lanier, Andy and Rumrill, Steven S. and Moran, Patrick and Nilsen, Elena and Hladik, Michelle L. and Pillsbury, Lori} } @mastersthesis {83185, title = {Factors Influencing Streamflow Generation Processes in Rain-dominated, Coastal Watersheds in Oregon}, year = {2021}, note = {The water in Oregon coastal streams comes from rainfall. As climate change shifts the timing and quantity of rainfall, already threatened species will be further stressed. This impressive doctoral dissertation examines how factors such as slope, lithology and land cover affect streamflow in watersheds stressed by climate change. Many coastal watersheds were examined. Mary Santelmann and Rebecca Flitcroft were co-major professors.}, pages = {152 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Water Resources Science Program}, address = {Corvallis, Or.}, keywords = {Alsea River, climate, Coho salmon = Oncorhynchus kisutch, Drift Creek (Alsea), geology, hydrology, Pacific salmonids = Oncorhynchus spp., precipitation, Salmon River, sediments, Siletz River, Siuslaw River, streamflow, Yachats River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/f7623k880 }, author = {Pazdral, Rosemary} } @article {83269, title = {Landscape genetics of American beaver in coastal Oregon}, journal = {The Journal of Wildlife Management}, volume = {85}, number = {7}, year = {2021}, note = {American beavers have often been moved from one location, where their dams and flooding might be a nuisance, to another, where they help with stream and water table restoration. The authors review the history of trapping and translocations of beavers in the Oregon Coast Range. {\textquotedblleft}Management requires a better understanding of the ability of beaver to disperse and colonize empty habitat, and the distances or landscapes over which a beaver, if translocated, is unlikely to return. We evaluated genetic structure and applied a landscape genetic approach to characterize landscape features that influence genetic flow for beaver in the Coast Range of Oregon.{\textquotedblright} (p.1464)}, month = {2021, Sep.}, pages = {p.1462-1475}, keywords = {Alsea River, Coos River, Coquille River, genetics, geographical distribution, habitats, human impacts, Necanicum River, Nehalem River, Nestucca River, North American beaver = Castor canadensis, North Umpqua River, Siletz River, Siltcoos River, Siuslaw River, Sixes River, South Umpqua River, topography, Trask River, Umpqua River, Wilson River, Yaquina River}, doi = {https://doi.org/10.1002/jwmg.22102}, author = {Epps, Clinton W. and Petro, Vanessa M. and Creech, Tyler G. and Crowhurst, Rachel S. and Weldy, Matthew J. and Taylor, Jimmy D.} } @article {83100, title = {Management of anadromous lampreys: Common threats, different approaches}, journal = {Journal of Great Lakes Research. Supplement}, volume = {47 }, number = {Sup.1 }, year = {2021}, note = {This review article summarizes what is known about the statuses of many lamprey species around the world. The usual suspects, primarily human activity and climate change get the blame for most population declines. Management of the Pacific lamprey is a bright spot, largely due to the efforts and advocacy of Native Americans. The Western river lamprey, on the other hand, suffers from inadequate research, which is needed in order to support conservation.}, month = {2021, Dec.}, pages = {S129-S146}, keywords = {Alsea River, Beaver Creek, climate, Cummins Creek, dams, depleted populations, human impacts, land use, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), River lamprey = Lampetra ayresi, Salmon River,, Siletz River, Siuslaw River, Tenmile Creek, Umpqua River, water use, Yachats River, Yaquina River}, doi = {https://doi.org/10.1016/j.jglr.2020.09.005 }, author = {Clemens, Benjamin J. and Arakawa, Hiroaki and Baker, Cindy and Coghian, Stephen and Kucheryavyy, Aleksandr and Lampman, Ralph and Lan{\c c}a, Maria Jo{\~a}o and Mateus, Catarina Sofia and Miller, Allison and Nazari, Hassan and Peque{\~n}o, Germ{\'a}n and Sutton, Trent M. and Yanai, Seiji} } @article {83114, title = {A maximum rupture model for the central and southern Cascadia subduction zone{\textemdash}reassessing ages for coastal evidence of megathrust earthquakes and tsunamis}, journal = {Quaternary Science Reviews}, volume = {261 }, number = {106922}, year = {2021}, note = {{\textquotedblleft}A new history of great earthquakes (and their tsunamis) for the central and southern Cascadia subduction zone shows more frequent (17 in the past 6700 yr) megathrust ruptures than previous coastal chronologies.{\textquotedblright} (from the Abstract) The article contains a link to supplementary data, also accessible through U.S. Geological Survey data releases.}, month = {2021, Jun.1}, pages = {19 p.}, keywords = {Alsea Bay, coastal hazards, Columbia River, Coos Bay, Coquille River, earthquakes, geology, mathematical modeling, Nehalem River, Nestucca Bay, Netarts Bay, paleosciences, Siletz Bay, Siuslaw River, tsunamis, Yaquina Bay}, doi = {https://doi.org/10.1016/j.quascirev.2021.106922 }, author = {Nelson, Alan R. and DuRoss. Christopher B. and Witter, Robert C. and Kelsey, Harvey M. and Engelhart, Simon E. and Mahan, Shannon A. and Gray, Harrison J. and Hawkes, Andrea D. and Horton, Benjamin P. and Padgett, Jason S.} } @booklet {83066, title = {Pacific Northwest Littoral Data}, year = {2021}, note = {{\textquotedblleft}This document contains five data tables in PDF file formats, that are used to characterize littoral subcell (beach, river mouth, and inner-shelf) conditions in the Pacific Northwest (PNW) region . . . These data have been compiled from pre-existing data sets . . . for the purposes of predicting possible beach erosion from potential future sea level rise (SLR) . . . The five data tables include Heavy-mineral tracers (Table 1), Heavy-mineral data (normalized) (Table 2), Subcell beach profile settings (Table 3), Subcell beach profile parameters (Table 4), and Subcell shelf profile parameters (Table 5){\textquotedblright} (p.1). The data supports the manuscript Peterson, C. D., Doyle, D. L., Rosenfeld, C. L., Kingen, K., (2020). Predicted Responses of Beaches, Bays, and Inner-Shelf Sand Supplies to Potential Sea Level Rise (0.5-1.0 m) in Three Small Littoral Subcells in the High-Wave-Energy Northern Oregon Coast, USA. Journal of Geography and Geology. v.12:.2. ( https://pdxscholar.library.pdx.edu/geology_fac/189/ )}, chapter = {2021, Mar.}, address = {Portland, Or.}, keywords = {Agate Beach, Alsea River, bathymetry, beach profiles, climate, Columbia River, Coos River, Coquille River, erosion, Florence, Or., heavy minerals, Lincoln City, Or., Nehalem River, Nestucca River, Netarts, Or., Newport, Or., Nye Beach, Otter Rock, Reedsport, Or., Rogue River, Salmon River, Sand Lake, sea level, Seal Rock, Siletz River, Siuslaw River, Sixes River, South Beach, Or., The Capes, Umpqua Jetty, Umpqua River, Whale Cove, Wilson River}, doi = {https://doi.org/10.15760/geology-data.01}, url = {https://pdxscholar.library.pdx.edu/geology_data/1/ }, author = {Peterson, Curt D. and Kingen, Kara E.P.}, editor = {Portland State University. Geology Department} } @article {83163, title = {Port of Toledo Strategic Business Plan Update: 11/23/2001 Final Strategic Business Plan Update}, year = {2021}, note = {Good statistics}, pages = {55 p.}, keywords = {Depot Slough, dredging, economics, industrial development, navigation, physical modification, Port of Toledo, ports, Tokyo Slough, Toledo (Or.), Toledo Industrial Park, Yaquina River}, url = {https://www.portoftoledo.org/_files/ugd/bcfe89_3a93c1a11ede48cbaad53a7e0cf8cd7e.pdf}, author = {BST Associates,, and Port of Toledo (Or.),} } @article {83111, title = {Effect of sulfide and the role of root mass on metabolic fluxes in the seagrass Zostera marina}, journal = {Environmental and Experimental Botany}, volume = {180}, number = {104267}, year = {2020}, note = {Eelgrass offer vital habitats for many species. Yet eelgrass populations around the world are declining. In this article, the authors examine the potential role of hydrogen sulfide in inhibiting eelgrass growth. This study showed that the size of eelgrass root mass was an important variable in understanding the plants{\textquoteright} interactions with sulfides. }, month = {2020, Dec.}, pages = {10 p.}, keywords = {carbon dioxide, eelgrass = Zostera marina, growth, hydrogen sulfide, Idaho Point, nitrogen, oxygen, Yaquina Bay}, doi = {https://doi.org/10.1016/j.envexpbot.2020.104267 }, author = {Peyer, Suzanne M. and Maricle, Brian R. and Young, David R.} } @article {82987, title = {Comparison of Oregon tsunami hazard scenarios to a probabilistic tsunami hazard analysis (PTHA)}, volume = {no.O-19-04}, year = {2019}, note = {In this paper, two different scenarios for tsunamis generated after earthquakes are contrasted. Five different sizes of earthquakes are compared. {\textquotedblleft}The immediate objective of this project is to determine how closely tsunami forces at typical coastal bridges compare between the DOGAMI and AECOM (Thio, 2019) tsunami simulations. The long-term objective is to determine the best and most cost-effective approach for estimating the current forces of a 1,000-yr exceedance tsunami for bridge design.{\textquotedblright} Estimated tsunamis and their effects on coastal bridges are explored, in order to help future bridges be designed to withstand these forces.}, pages = {94 p.}, institution = {Oregon Department of Geology and Mineral Industries }, address = {Portland, Or.}, keywords = {Astoria (Or.), Seaside (Or.), Cannon Beach (Or.), Bandon (Or.), Gold Beach (Or.), Coastal hazards, earthquakes, tsunamis, mathematical modeling, bridges, Columbia River, Necanicum River, Ecola Creek, Coquille River estuary, Rogue River, Lincoln City (Or.), Newport (Or.), Waldport (Or.), Yachats (Or.), Siletz Bay, Yaquina Bay, Alsea Bay, Yachats River estuary}, url = {https://www.oregongeology.org/pubs/ofr/O-19-04_report.pdf }, author = {Priest, George R. and Allan, Jonathan C.} } @article {83230, title = {Headwater streams and wetlands are critical for sustaining fish, fisheries, and ecosystem services}, journal = {Fisheries}, volume = {44}, number = {2}, year = {2019}, note = {In 2019, the Trump Administration proposed amending the Waters of the United States (WOTUS) Act to narrow the definition of wetlands, and to remove millions of acres from protection. In resonse, the American Fisheries Society published this article, an {\textquotedblleft}AFS Special Report{\textquotedblright} on the value of headwaters and wetlands, particularly of streams that are dry part of the year. The Biden Administration subsequently reversed the Trump amendment, but the U.S. Supreme Court, in Sackett vs. the Environmental Protection Agency, ruled in favor of narrowing the definition in 2023. Many aspects of this slow-moving environmental disaster are still in litigation. The article includes a photograph of Crowley Creek on Cascade Head.}, month = {2019, Feb.}, pages = {p.73-91}, keywords = {Calapooia River, Cascade Head National Scenic And Research Area, Coho salmon = Oncorhynchus kisutch, Crowley Creek, depleted populations, ecosystem health, environmental law and policy, general, Oregon chub = Oregonichthys crameri, wetlands, Willamette River}, doi = {https://doi.org/10.1002/fsh.10229 }, url = {https://ir.library.oregonstate.edu/concern/articles/n583z1008 }, author = {Colvin, Susan A. R. and Sullivan, S. and Mazeika P. and Shirey, Patrick D. and Colvin, Randall W. and Winemiller, Kirk O. and Hughes, Robert M. and Fausch, Kurt D. and Infante, Dana M. and Olden, Julian D. and Bestgen, Kevin R. and Danehy, Robert J. and Eby, Lisa} } @article {82981, title = {Rare, Threatened and Endangered Species of Oregon}, year = {2019}, note = {This document is more than a list of threatened, sensitive and endangered species. The authors discuss the regulatory environment, provide access to resources for learning more about listed species, and give the bioregions where the species are found. A valuable resource.}, pages = {133 p.}, institution = {Oregon Biodiversity Information Center}, address = {Portland, Or.}, keywords = {Amphibians, birds, fish, invertebrates, mammals, reptiles, depleted populations, endangered species, geographic distribution, natural resource management, spatial distribution,}, url = {https://inr.oregonstate.edu/sites/inr.oregonstate.edu/files/2019-rte-book.pdf} } @article {82982, title = {Status of the European Green Crab, Carcinus maenas, in Oregon and Washington Coastal Estuaries in 2018}, year = {2019}, note = {The invasive European green crab is a voracious predator of bivalve molluscs, small crustaceans and other organisms. It has been present in Oregon since the late 1990s. The population grows when winter waters are warm, as they are during El Ni{\~n}os. {\textquotedblleft}After the arrival of a strong year class in 1998, significant recruitment to the populations occurred only in2003, 2005, 2006, 2010, 2015, 2016, 2017 and 2018. Warm winter water temperatures, high Pacific Decadal Oscillation (PDO) and Multivariate ENSO (El Ni{\~n}o Southern Oscillation) Indices, and a high abundance of southern copepods are all correlated with strong year classes and vice versa. . . Prior to 2015, green crabs were too rare to exert measurable effects on the native benthic community and on shellfish culture in Oregon and Washington. Following the recent strong El Ni{\~n}o, however, we documented the arrival of four strong year classes in 2015, 2016, 2017 and 2018. Average catch rates over the last four years steadily increased from 0.5 to 0.8 to 2.2 and to 3.2 crabs per trap. The catches in the last 2 years are much higher than in any of the previous years, including 1998. Since green crabs live for 6 years, these four consecutive year classes will produce larvae until 2024..{\textquotedblright} (from the Executive Summary) Coos Bay, in particular, has experienced shocking growth of this population, going from 9 crabs captured in 2002 to 1,280 crabs captured in 2018. This report is accompanied by a dataset, available at: https://ir.library.oregonstate.edu/concern/datasets/tt44pt057 }, pages = {30 p.}, institution = {Pacific States Marine Fisheries Commission. Aquatic Nuisance Species Project}, address = {Portland, Or.}, keywords = {Alsea Bay, aquatic invertebrates, Coos Bay, Coquille River estuary, crustaceans, El Ni{\~n}o, European green crab = Carcinus maenas, introduced species, Nehalem Bay, Netarts Bay, Pacific Decadal Oscillation, population count, Tillamook Bay, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/vt150q47j }, author = {Yamada, Sylvia Behrens, and Schooler, Shon and Yednock, Bree and Indivero, Julia and Carlson, Christopher and Prickett, Joel A. and Randall, Andrea} } @article {80511, title = {Characterizing the adherence profiles of virulent Vibrio parahaemolyticus isolates}, journal = {Microbial Ecology}, volume = {75}, year = {2018}, note = {Vibrio parahaemolyticus is a pathogen associated with shellfish poisoning caused by eating raw or undercooked oysters. Depuration is a standard method for making shellfish safe by placing live animals in clean seawater in order to reduce bacterial contaminants. Unfortunately, it is not very effective at removing this organism. Thus, it is important to understand how V. parahaemolyticus is associated with oysters. This article examines how Vibrios colonize surfaces. Eight different strains were examined to see how they adhered to surfaces, to see if motility could predict persistence in oyster tissues, and to see if examining genetic differences could provide insights. The authors observed {\textquotedblleft}that the motility phenotype of a strain appeared to be a better indicator for persistence in the oyster.{\textquotedblright}}, pages = {p.152-167}, keywords = {bivalves, molluscs, motility, Oregon Oyster Farms, shellfish poisoning, Vibrio = Vibrio parahaemolyticus, Willapa Bay, Yaquina Bay}, doi = {10.1007/s00248-017-1025-8}, author = {Aagesen, Alisha M. and Phuvaste, Sureerat and Su, Yi-Cheng and Hase, Claudia C.} } @article {80516, title = {Evaluating tidal wetland restoration performance using National Estuarine Research Reserve System reference sites and the Restoration Performance Index (RPI)}, journal = {Estuaries and Coasts}, volume = {41}, year = {2018}, note = {Oregon{\textquoteright}s estuaries have lost a lot of wetlands. Depending on the estuary, anywhere from 2\% to 94\% of native wetlands have been lost. Today, wetlands are being restored. But how do we know how successful wetland restoration projects may be? This article describes an analytical tool, the Restoration Performance Index, which compares different parameters between restored wetlands and unmodified reference sites. The authors compared 17 tidal wetland restoration projects in order to determine the level of restoration achieved, to compare excavation and hydrologic restoration projects, to identify key indicators for restoration effectiveness, and to evaluate the National Estuarine Research Reserve System as a source for reference sites. Full text of this article is available from the authors via ResearchGate.}, pages = {p.36-51}, keywords = {Chesapeake Bay, Coos Bay, environmental monitoring, hydrology, marsh restoration, Narragansett Bay, North Carolina, restoration ecology, South Slough, Toledo (Or.), Wells (Maine), wetland vegetation, Yaquina River Estuary}, doi = {10.1007/s12237-017-0220-7}, author = {Raposa, Kenneth B. and Lerberg, Scott and Cornu, Craig and Fear, John and Garfield, Nina and Peter, Christopher and Weber, Robin L. J. and Moore, Gregg and Burdick, David and Dionne, Michelle} } @article {83011, title = {Expansion and systematics redefinition of the most threatened freshwater mussel family, the Margaritiferidae}, journal = {Molecular Phylogenetics and Evolution}, volume = {127}, year = {2018}, note = {In this article, the evolution, distribution and taxonomy of the freshwater pearl mussel family, Margaritiferidae, is explored. Fossils as well as genetic data were used to model the diversification of this family. Maps, charts.}, month = {2018, Oct.}, pages = {p.98-118}, keywords = {aquatic invertebrates, bivalves, evolution, general, genetics, geographic distribution, molluscs, morphology, mussels, phylogeny, taxonomy}, doi = {https://doi.org/10.1016/j.ympev.2018.04.041 }, author = {Lopes-Lima, Manuel and Bolotov, Ivan N. and Do, Van Tu and Aldridge, David C. and Fonseca, Miguel M. and Gan, Han Ming and Gofarov, Mikhail Y. and Kondakov, Alexander V. and Pri{\'e}, Vincent and Sousa, Ronaldo and Varandas, Simone and Vikhrev, Ilya V. and Teixeira, Amilcar and Wu, Rui-Wen and Wu, Xiaoping and Zieritz, Alexandra and Froufe, Elsa and Bogan, Arthur E.} } @article {82001, title = {A genetic reconstruction of the invasion of the calanoid copepod Pseudodiaptomus inopinus across the North American Pacific Coast}, journal = {Biological Invasions}, volume = {20}, year = {2018}, note = {A planktonic copepod, Pseudiaptomus inopinus, native to the shores of China, Korea and Japan, has invaded the estuaries of the Pacific Northwest. This article addresses the question of how the species spread in the northwestern Pacific. Did it spread by migration from one estuary to its neighbors? Did it spread from a migrant pool offshore? Or did it spread by irregular random pulses? The authors used genetics to answer this question and concluded that a pulsed model of spread by ballast water at irregular intervals fits the data. {\textquotedblleft}The stochastic pattern of long-range dispersal observed in P. inopus suggests that planktonic invaders may spread across estuarine systems in a highly unpredictable manner.{\textquotedblright} (p.1592) }, pages = {p.1577-1595 }, keywords = {Tillamook Bay, Yaquina Bay, Umpqua River estuary, Coos Bay, Coquille Bay, introduced species, aquatic invertebrates, crustaceans, copepods, Pseudiaptomus inopinus, geographic distribution, ballast water, genetics, molecular biology}, doi = {https://doi.org/10.1007/s10530-017-1649-0 }, author = {Dexter, Eric and Bollens, Stephen M. and Cordell, Jeffery and Soh, Ho Young and Rollwagen-Bollens, Gretchen and Pfeifer, Susanne P. and Goudet, J{\'e}r{\^o}me and Vuilleumier, S{\'e}verine} } @article {82861, title = {Status of the European Green Crab, Carcinus maenas, in Oregon and Washington coastal Estuaries in 2017}, year = {2018}, note = {The invasive European green crab is a voracious predator of bivalve molluscs, small crustaceans and other organisms. It has been present in Oregon since the late 1990s. The population grows when winter waters are warm, as they are during El Ni{\~n}os. {\textquotedblleft}Prior to 2015, green crabs were too rare to exert measurable effects on the native benthic community and on shellfish culture in Oregon and Washington. Following the recent strong El Ni{\~n}o, however, we documented the arrival of three strong year classes in 2015, 2016 and 2017. Average catch rates in over the last three years steadily increased from 0.5 to 0.8 and to 1.9 crabs per trap. These catches are much higher than in any of the previous years, including 1998. Since green crabs live for 6 years, these three consecutive year classes will provide larvae until 2023. A switch to cooler ocean conditions in the coming years will result in poor recruitment, but a return to high PDO and strong El Ni{\~n}o patterns would signal good recruitment and higher green crab densities.{\textquotedblright} (from the Executive Summary) Coos Bay, in particular, has experienced shocking growth of this population, going from 9 crabs captured in 2002 to 1,653 crabs captured in 2017. This report is accompanied by a dataset, available at: https://ir.library.oregonstate.edu/concern/datasets/rn3016632 }, pages = {29 p.}, institution = {Pacific States Marine Fisheries Commission. Aquatic Nuisance Species Project}, keywords = {Alsea Bay, aquatic invertebrates, Boat ramp (Netarts), Coos Bay, Coquille River estuary, crustaceans, El Nino, European green crab = Carcinus maenas, Grays Harbor (Wa.), Hatfield Marine Science Center, introduced species, Johnson{\textquoteright}s Slough (Yaquina), Makah Bay (Wa.), Nehalem Bay, Netarts Bay, North of Nevor Shellfish (Netarts), Oregon Coast Aquarium mudflat, Pacific Decadal Oscillation, population count, Sally{\textquoteright}s Bend, Tillamook Bay, Whiskey Creek Salmon Hatchery, Willapa Bay (Wa.), Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/rx913w156 }, author = {Yamada, Sylvia Behrens and Yednock, Bree and Indivero, Julia and Geierman, Christina and Prickett, Joel A. and Randall, Andrea and Akmajian, Adrianne} } @article {82391, title = {Coordinated Population Forecast for Lincoln County, its Urban Growth Boundaries (UGB), and Area Outside UGBs 2017-2067}, volume = {no.29}, year = {2017}, note = {In-migration from areas outside Lincoln County, and mortality of an aging population are the major drivers of population levels in the area. {\textquotedblleft}Lincoln County{\textquoteright}s total population is forecast to grow by 12,684 persons (27 percent) from 2017 to 2067, which translates into a total countywide population of 60,628 in 2067 (Figure 15). The population is forecast to grow at the highest rate {\textemdash} 0.7 percent per year {\textemdash} in the near-term (2017-2025). This anticipated population growth in the near-term is based on three core assumptions: (1) Lincoln County{\textquoteright}s economy will continue to strengthen in the next 10 years; (2) middle-aged persons will continue to migrate into the county; (3) empty nesters and retirees will continue to migrate into the county, thus increasing deaths{\textquotedblright} (p.19)}, month = {2017, Jun. 30}, pages = {42 p.}, institution = {Portland State University. Population Research Center}, address = {Portland, Or.}, keywords = {Lincoln County, Depoe Bay (Or.), Lincoln City (Or.), Newport (Or.), Siletz (Or.), Toledo (Or.), Waldport (Or.), Yachats (Or.), demographics, population count, mathematical modeling}, url = {https://pdxscholar.library.pdx.edu/cgi/viewcontent.cgi?article=1029\&context=opfp }, author = {Jurjevich, Jason R. and Chun, Nicholas and Rancik, Kevin and Proehl, Risa and Michel, Julia; and Harada, Matt and Rynerson, Charles and Morris, Randy} } @article {77446, title = {The demographic consequences of growing older and bigger in oyster populations}, journal = {Ecological Applications}, volume = {26}, year = {2016}, note = {Modeling populations of marine animals, particularly animals that reproduce through broadcast spawning, is . . . complicated. In the case of oysters, there is great variation between size and age. For example, larger female oysters can hold more eggs and produce many more young than smaller females, but despite their difference in size, they can be the same age. Older oysters are more susceptible to disease, while younger oysters are more vulnerable to predation. Thus, a good population model must take both age and size into account. {\textquotedblleft}To better understand how population structure, particularly that of age and size, impacts restoration and management decisions, we developed and compared a size-structured integral projection model (IPM) and an age-and size structured IPM, using a population of Crassostrea gigas oysters in the northeastern Pacific Ocean{\textquotedblright} (from the Abstract).}, pages = {p.2206-2217}, keywords = {age composition, aquaculture, bivalves, demographics, fecundity, growth, Hatfield Marine Science Center, mathematical modeling, Molluscan Broodstock Program, molluscs, oysters, Pacific oyster = Crassostrea gigas, population biology, recruitment, Yaquina Bay}, doi = {doi: 10.1002/eap.1374}, author = {Moore, Jacob L. and Lipcius, Romuald N. and Puckett, Brandon and Schreiber, Sebastian J.} } @article {77366, title = {Genetic evidence supports recolonization by Mya arenaria of western Europe from North America}, journal = {Marine Ecology Progress Series}, volume = {549}, year = {2016}, note = {The softshell clam is found in North America and in Europe. Its origin has been debated. We know that this clam was transplanted by humans to western North America. But where did it come from? Were there refuges in southern Europe where the clam survived the hardships of the Ice Ages? Did it migrate to North America from Europe, or was the migration in the other direction? In this article, the authors report on genetic analysis and conclude that the species originated in eastern North America and subsequently colonized Europe. Specimens from Alsea Bay and Yaquina Bay were part of the analysis. }, month = {2016}, pages = {p.99-112}, keywords = {Yaquina Bay, Alsea Bay, Softshell clam = Mya arenaria, genetics, population biology, geographic distribution,}, doi = {doi: 10.3354/meps11672}, url = {https://www.int-res.com/articles/meps2016/549/m549p099.pdf}, author = {Cross, M.E. and Bradley, C. R. and Cross, T. F. and Culloty, S. and Lynch, S. and McGinnity, P. and O{\textquoteright}Riordan, R. M. and Vartia, S. and Prod{\H o}hl, P. A.} } @article {76696, title = {Environmental drivers and reproductive consequences of variation in the diet of a marine predator}, journal = {Journal of Marine Systems }, volume = {146 }, year = {2015}, note = {{\textquotedblleft}Ocean conditions can greatly impact lower trophic level prey assemblages in marine ecosystems, with effects of ocean state propagating to higher trophic levels. In many regions throughout their range, common murre (Uria aalge) exhibit narrow dietary breadth in feeding chicks and therefore are vulnerable to recruitment failures of dominant prey species during the breeding season. Contrastingly, common murres nesting in the northern California Current off Oregon, exhibit high species diversity and variability in dominant prey consumed. We studied the diets of common murres over 10 years between 1998 and 2011, a period in which the northern California Current experienced dramatic interannual variability in ocean conditions. Likewise, murre diets off Oregon varied considerably. Interannual variation in murre chick diets was influenced by environmental drivers occurring before and during the breeding season, and at both basin and local scales.{\textquotedblright} (from the Abstract)}, month = {2015}, pages = {p.72{\textendash}81}, keywords = {climate, common murre = Uria aalge, diet, El Nino, fecundity, La Nina, nutrition, Pacific Decadal Oscillation, Pacific herring = Clupea pallasii, Pacific sand lance = Ammodytes hexapterus, predation, Surf smelt = Hypomesus pretiosis, Whitebait smelt = Allosmerus elongates, Yaquina Head}, doi = {10.1016/j.jmarsys.2014.06.015}, author = {Gladics, Amanda J. and Suryan, Robert M. and Parrish, Julia K. and Horton, Cheryl A. and Daly, Elizabeth A. and Peterson, William T.} } @article {77051, title = {The Olympia oyster Ostrea lurida: recent advances in natural history, ecology, and restoration}, journal = {Journal of Shellfish Research}, volume = {34}, year = {2015}, note = {This is an excellent review of the present state of knowledge about the Olympia oyster. Biology and restoration attempts are described.}, month = {2015, Aug.}, pages = {p.259-271}, keywords = {aquaculture, aquatic invertebrates, bivalves, Coos Bay, depleted populations, life history information, mollusks, Olympia oyster=Ostrea lurida (Ostrea conchaphila), San Francisco Bay, Tomales Bay, Willapa Bay, Yaquina Bay}, author = {Pritchard, Catharine and Shanks, Alan and Rimler, Rose and Oates, Mark and Rumrill, Steven S.} } @article {82381, title = {Oregon Natural Areas Plan}, year = {2015}, note = {This plan is intended to {\textquotedblleft}1. Create a discrete and limited system of natural areas representing the full range of Oregon{\textquoteright}s natural resources. These areas are to be used for scientific research, education and nature interpretation. 2. Establish a method for public and private sector voluntary cooperation in the development of a system of natural areas. 3. Provide advice to managers of natural areas on the management and conservation of natural resources within Oregon.{\textquotedblright} (p.2)}, pages = {189 p.}, address = {Portland, Or.}, keywords = {Cascade Head, depleted populations, ecological values, environmental policy and law, general, general ecosystem description, habitat conservation, land use, McCaffery Slough (Yaquina), methodology, natural resource management, Netarts Bay, Netarts Spit,}, url = {https://inr.oregonstate.edu/sites/inr.oregonstate.edu/files/2015_or_natural_areas_plan.pdf } } @article {82980, title = {Appendix A to the Pacific Coast Salmon Fishery Management Plan As Modified by Amendment 18 to the Pacific Coast Salmon Plan: Identification and Description of Essential Fish Habitat, Adverse Impacts, and Recommended Conservation Measures for Salmon}, year = {2014}, note = {An important guide to essential habitats and requirements of three species of salmon, and the challenges facing them. Illustrated. Maps.}, pages = {219 p.}, institution = {Pacific Fishery Management Council}, address = {Portland, Or.}, keywords = {Necanicum River, Nehalem River, Wilson - Trask {\textendash} Nestucca, Siletz Yaquina River, Alsea River, Siuslaw River, Siltcoos River, N. Umpqua River, S. Umpqua River, Umpqua River, Coos River, Coquille River, Sixes River, Rogue River, Coho salmon = Oncorhynchus, Pink salmon (humpback) = Oncorhynchus gorbuscha, life history information, habitats, North American beaver = Castor Canadensis, agriculture, logging, dams, dredging, irrigation, mining, water pollution, water temperature, erosion, sediments, human impac}, url = {https://www.pcouncil.org/documents/2019/08/salmon-efh-appendix-a.pdf/ } } @article {54876, title = {Records of trace metals in sediments from the Oregon shelf and slope: Investigating the occurrence of hypoxia over the past several thousand years}, journal = {Chemical Geology }, volume = {382}, year = {2014}, note = {In recent years, strong coastal winds have caused strong upwelling events, so strong that a layer of low-oxygen seawater has been brought closer to the surface, leading to mass die-offs of marine life, and affecting estuarine waters as well. A current question about these hypoxic events has to do with whether or not they are related to climate change. A look at the history of the region is therefore called for. {\textquotedblleft}A record of past hypoxia occurrence frequency would help distinguish human-induced causes from those related to natural climate changes. . . . Determining trends in trace metal abundances can serve as an indicator for changes in oxygenation conditions over time.{\textquotedblright} (p.33) The authors look at trace metals in sediments from the Yaquina, Alsea and Siuslaw Rivers and consider other factors possibly influencing their data. {\textquotedblleft}Supplementary data to this article can be found online at http://dx.doi.org/10.1016/j.chemgeo.2014.05.029 .{\textquotedblright} (p.42)}, month = {2014, Aug.29}, pages = {p.32{\textendash}43}, keywords = {Alsea Bay, chemistry, climate change, dissolved oxygen, hypoxia, paleosciences, sediments, Siuslaw Bay, Trace metals, winds, Yaquina Bay}, doi = {10.1016/j.chemgeo.2014.05.029}, author = {Erhardt, Andrea M. and Reimers, Clare E. and Kadko, David and Paytan, Adina} } @article {54886, title = {Tsunami impact to Washington and northern Oregon from segment ruptures on the southern Cascadia subduction zone}, journal = {Natural Hazards}, volume = {72}, year = {2014}, note = {All who live on the West Coast of the United States should be aware of the possibility of a major earthquake occurring. But what if only a part of the subduction zone ruptures? This article examines a possible rupture in the southern half of the Cascadia Subduction Zone (south of Alsea Bay, Oregon). The authors ask important questions. How quickly does tsunami wave height decline north of the southern rupture areas? How much time do communities north of the southern rupture areas have to evacuate before the first inundation and the largest inundation occur? How far north of the southern rupture areas will felt shaking likely trigger evacuation of a populace trained to evacuate for a local earthquake? (p.851) The authors address these questions using a 10,000-year record of offshore turbedite deposits and a ~4,600-year record of tsunami deposits at Bradley Lake.}, month = {2014, Jun.}, pages = {p.849-870}, keywords = {Bandon (Or.), Brookings (Or.), Cannon Beach (Or.), Cape Blanco, coastal hazards, Columbia River, Coos Bay, Crescent City (Cal.), Depoe Bay (Or.), earthquakes, Florence (Or.), geology, Gold Beach (Or.), Grays Harbor (Wa.), Lincoln City (Or.), Long Beach (Wa.), Manzanita (Or.), Netarts Bay, Newport (Or.), Pacific City (Or.), paleosciences, Port Orford (Or.), Rockaway (Or.), Seaside (Or.), Tillamook Bay, tsunamis, Waldport (Or.), Winchester Bay}, doi = {10.1007/s11069-014-1041-7}, author = {Priest, George R. and Zhang, Yinglong and Witter, Robert C. and Wang, Kelin and Goldfinger, Chris and Stimely, Laura L.} } @article {51396, title = {2012 Ocean Bioaccumulation Survey: Final Report}, year = {2013}, note = {{\textquotedblleft}Prepared for the City of Newport, Oregon.{\textquotedblright} {\textquotedblleft}Oregon State University collected and analyzed coastal marine species for concentrations of heavy metals and organic pollutants August to October 2012. . . . Animals were collected from stations around the Georgia Pacific (G--P) outfall pipe adjacent to Nye Beach, OR (mixing zone stations) as well as stations north of Yaquina Head and south of Yaquina Bay. . . . Organisms were processed for trace metals, PCBs \& congeners, phenolics, and PBDEs. There was little evidence for bioaccumulation of contaminants of concern associated with the G--P outfall pipe.{\textquotedblright} (from the Executive Summary)}, month = {2013, Aug. 27}, pages = {77 p.}, keywords = {arsenic, cadmium, chromium, copper, cyanide, Georgia-Pacific Corporation, heavy metals, mercury, Moolack Beach, Newport (Or.), nickel, Nye Beach, polychlorinated biphenyls, silver, South Beach, vanadium, water pollution, water quality, Yaquina Head, zinc}, url = {https://newportoregon.gov/citygov/comm/tatf/supp/CityofNewportFinalBioaccumulationReport080713.pdf}, author = {Henkel, Sarah and Heppell, Scott and Heppell, Selina and Politano, Kristin and Politano, Vincent and Oregon State University} } @article {54846, title = {Climate Change in the Northwest: Implications for Our Landscapes, Waters, and Communities}, year = {2013}, note = {{\textquotedblleft}As an assessment, this report aims to be representative (though not exhaustive) of the key climate change issues as reflected in the growing body of Northwest climate change science, impacts, and adaptation literature available at this point in time.{\textquotedblright} ({\textquotedblleft}About This Report,{\textquotedblright} p.xiii)}, pages = {230 p.}, institution = {Island Pr.}, address = {Washington, D.C.}, keywords = {agriculture, climate change, coastal hazards, erosion, flooding, forestry, general, general ecosystem description, health, Native Americans, natural resources management, Oregon, precipitation, water temperature}, url = {https://cig.uw.edu/projects/northwest-climate-assessment-report/}, author = {Pacific Northwest Climate Impacts Research Consortium, and University of Washington. Climate Impacts Group, and United States. National Oceanic and Atmospheric Administration. Office of Climate Observation. Climate Program Office,}, editor = {Dalton, Meghan M. and Mote, Philip W. and Snover, Amy K.} } @article {51291, title = {Far-South ancient murrelet family groups: rapid long-distance movements or local breeding?}, journal = {Northwestern Naturalist}, volume = {94}, year = {2013}, note = {Ancient murrelets (not to be confused with marbled murrelets) are known to breed in British Columbia, at Haida Gwaii. Yet, family groups, including chicks, can be found as far south as the central Oregon coast. Are some ancient murrelets breeding south of B.C.? Or, are they finding a way to travel with unfledged chicks to their feeding grounds? This article attempts to answer this question. The furthest south family group in this study, which includes data from 1998-2011, was found offshore, just south of Newport.}, month = {2013, Win}, pages = {p.227-239}, keywords = {Ancient murrelet = Synthliboramphus antiquus, birds, depleted populations, Newport (Or.), Vancouver Island, Washington (State), Yaquina Head}, doi = {10.1898/12-36.1}, author = {Sealy, Spencer G. and Carter, Harry R. and Thomson, Richard E. and Pearson, Scott F.} } @article {51351, title = {Geographic range and structure of cryptic genetic diversity among Pacific North American populations of the non-native amphipod Grandidierella japonica}, journal = {Biological Invasions}, volume = {15}, year = {2013}, note = {In this article, the authors attempt to reconstruct the invasion history of the introduced amphipod Gradidierella japonica. DNA analysis shows two distinct groups {\textendash} one from San Francisco south, and the other north of San Francisco. There are significant genetic differences between the two groups, which, coupled with low genetic diversity within each group, suggests that there were two separate introductions of this species to the West Coast.}, month = {2013}, pages = {p.2415{\textendash}2428}, keywords = {amphipods, Columbia River estuary, Coos Bay, crustaceans, genetics, Grandidierella japonica, introduced species, Puget Sound, San Francisco Bay, Umpqua River estuary, Winchester Bay, Yaquina Bay}, doi = {10.1007/s10530-013-0462-7}, author = {Pilgrim, Erik M. and Blum, Michael J. and Reusser, Deborah A. and Lee II, Henry and Darling, John A.} } @article {36206, title = {Hatfield Marine Science Center Dynamic Revetment Report DSL Permit $\#$45455-FP Monitoring Report February, 2013}, year = {2013}, note = {This is the second in a series of five annual reports concerning control of erosion along Yaquina Bay next to the Hatfield Marine Science Center. Parts of the shoreline were stabilized in 2007 and 2011. Before more dynamic revetments will be permitted, a five-year study of nearby unmodified shorelines is required. {\textquotedblleft}Monitoring of beach profiles indicated that as of December 2012, the 2011 Dynamic Revetment Project (DRP) has successfully stabilized the shoreline in the project area, while rapid erosion has continued in the adjacent Reference beach area. Erosion in the unprotected Reference area in the period 2009-2012 has been as great as 9 m (29.5 ft).{\textquotedblright} (from the Abstract) Aerial photograph, color photographs.}, pages = {41 p.}, institution = {Oregon State University. Hatfield Marine Science Center}, address = {Newport, Or.}, keywords = {American Coot = Fulica Americana, amphipods, aquatic invertebrates, beaches, benthos, birds, coastal hazards, erosion, fish, Hatfield Marine Science Center, Pacific staghorn sculpin = Leptocottus armatus, physical, Shiner perch = Cymatogaster aggregate, species list, terrestrial vegetation, wave height data, Western gull = Larus occidentalis, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/4x51hj35n}, author = {Janet G Webster and Nelson, Walt and Allan, Jonathan and Stephensen, Shawn and Politano, Vincent and Folger, Christina L.} } @article {52406, title = {Impacts of Predicted Global Sea-Level Rise on Oregon Beaches and Tidelands}, volume = {Paper 45}, year = {2013}, note = {This report consists of two sections, one on the impact of climate change and its associated sea level rise on Oregon{\textquoteright}s beaches, and another on the impact on Oregon tidelands and estuaries. {\textquotedblleft}Two background sections on the expected impacts from predicted sea level rise on the Oregon coast were prepared for Oregon Shores Conservation Coalition{\textquoteright}s {\textquoteleft}Coastal Climate Change Adaptation Project . . . . The two sections are developed for broad distribution to coastal residents, community leaders, government agencies, and other interested parties. The two non-technical sections use geometric or gradient change approaches to illustrate potential impacts of shoreline retreat and tideland submergence under conditions of accelerated global sea level rise, as predicted for the next century or two.{\textquotedblright} (from the Introduction)}, pages = {19 p.}, institution = {Portland State University. Dept. of Geology,}, keywords = {beaches, climate change, earthquakes, erosion, estuaries, flooding, general, marshes, Oregon, salinity, sea level, subsidence, wetlands}, url = {https://pdxscholar.library.pdx.edu/geology_fac/45/}, author = {Peterson, Curt D.} } @proceedings {51431, title = {Newport dock remediation and geotechnical risk mitigation in variably weathered rock conditions}, year = {2013}, note = {"Proceedings of the thirteenth triennial international conference, April 25-28, 2013, Seattle, Washington." Discusses the removal of the WWII-era concrete ship Pasley and the stabilization of the Port of Newport{\textquoteright}s International Terminal. {\textquotedblleft}In 1948, the Port of Newport sank two reinforced-concrete cargo ships on the north shore of Yaquina Bay to serve as wharves for cargo handling. Over time, the ships cracked and moved up to 3 ft toward the bay, resulting in ground settlement, damage to structures near the ships, and an increased risk of releasing petroleum contaminants stored inside the ships into the bay. Through an extensive analysis of alternatives to make the best use of available funds, the selected alternative was to construct a temporary cofferdam and remove the western ship, stabilize the eastern ship with anchors and ballast, and construct a new 800-ft-long, 40-ft-wide dock with an anchored bulkhead wall.{\textquotedblright} (from the Abstract) Engineering challenges and solutions are discussed. Color photographs, schematic drawings.}, pages = {p.929-938}, publisher = {American Society of Civil Engineers,}, address = {Seattle, Wa.}, keywords = {engineering, harbors, human impacts, Port of Newport, ports, urban development, Yaquina Bay}, doi = {http://dx.doi.org/10.1061/9780784413067.096}, author = {Schlechter, S. M. and Greenfield, M. W. and Reed, M. W.}, editor = {Ostbo, Bruce I. and Oates, Don and American Society of Civil Engineers. Coasts Oceans Ports and Rivers Institute and American Society of Civil Engineers. Ports and Harbors Technical Committee, and Permanent International Association of Navigation Congresses,} } @article {77361, title = {NorWeST Stream Temp: Regional Database and Modeled Stream Temperatures [web page]}, year = {2013}, note = {This website gives water temperature data coupled with climate scenarios for western U.S. streams. Hundreds of biologists and hydrologists contributed to the temperature database. The database contains over 200,000,000 hourly stream temperature readings at more than 20,000 stream sites. The data were used to develop 36 historical and future climate scenarios at 1-kilometer resolution for over 1,000,000 stream kilometers. The website includes an interactive stream temperature viewer.}, publisher = {U.S. Rocky Mountain Research Station. Air, Water \& Aquatic Environments Program}, keywords = {Oregon, Pacific Northwest, Pacific Southwest, Intermountain West, water temperature, climate, environmental monitoring, mathematical modeling}, url = {https://www.fs.usda.gov/rm/boise/AWAE/projects/NorWeST.html}, author = {Isaak, D. J. and Wenger, S. J. and Peterson, E. E. and Ver Hoef, J. M. and Hostetler, S. and Luce, C. H. and Dunham, J. B. and Kershner, J. and Roper, B. B. and Nagel, D. and Horan, D. and Chandler, G. and Parkes, S. and Wollrab, S. and U.S. Rocky Mountain Research Station. Air Water \& Aquatic Environments Program} } @article {83162, title = {Port of Toledo Strategic Business \& Capital Investment Plan: Final Report, March, 2013}, year = {2013}, note = {Colored maps, architectural drawings}, pages = {49 p.}, keywords = {Depot Slough, dredging, economics, industrial development, navigation, physical modification, Port of Toledo, ports, Tokyo Slough, Toledo (Or.), Yaquina River}, url = {https://www.portoftoledo.org/_files/ugd/58cab9_166bc84dea7d408a88a760e42d8c04d0.pdf}, author = {Port of Toledo (Or.),} } @article {36106, title = {Riparian litter inputs to streams in the central Oregon Coast Range}, journal = {Freshwater Science}, volume = {32}, number = {1}, year = {2013}, note = {The type of vegetation along a stream bank influences the stream{\textquoteright}s ecosystem. Coniferous vegetation provides logs and year-long shade. Deciduous vegetation supplies important nutrients to streams and supports aquatic invertebrate populations. While Oregon{\textquoteright}s current forest management practices stress conifer-dominated riparian areas, the authors suggest that each type of vegetation makes valuable contributions to its streams, and that the ecosystems might benefit from occasional interruptions of different streamside vegetation types.}, month = {2013, Mar.}, pages = {p. 343{\textendash}358}, keywords = {Alsea River Basin, Big Elk Creek, ecosystem health, habitats, Lake Creek, Lobster Creek, Lower Alsea River, terrestrial vegetation, Upper Alsea River, water temperature, Yaquina River Basin}, doi = {10.1899/12-074.1}, url = {https://ir.library.oregonstate.edu/concern/articles/2v23vv040}, author = {Hart, Stephanie K. and Hibbs, David E. and Perakis, Steven S.} } @article {51426, title = {Seismic Evaluation, HMSC Office Building, Newport, Oregon for Oregon Department of Fish \& Wildlife}, year = {2013}, note = {{\textquotedblleft}Project: 2013007{\textquotedblright} {\textquotedblleft}The purpose of this memorandum is to provide a preliminary seismic assessment of the ODFW HMSC Office Building in Newport, OR. This report includes a description of the local seismic hazard, a description of the building{\textquoteright}s lateral force resisting system, a description of the methods employed to evaluate the building, evaluation findings, a preliminary schematic design for mitigation of deficiencies and preliminary construction cost estimates to implement the schematic design.{\textquotedblright} (p.1)}, month = {2013, Jun.22}, pages = {74 p.}, institution = {Pillar Consulting Group, }, address = {Corvallis, Or.}, keywords = {coastal hazards, earthquakes, engineering, Hatfield Marine Science Center}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/8w32r613r}, author = {Pillar Consulting Group Inc.,} } @article {54631, title = {Tsunami inundation scenarios for Oregon}, volume = {no. O-13-19}, year = {2013}, note = {This technical document accompanies the 2013 tsunami inundation map series for coastal Oregon. It describes the methodology used to produce the maps. In addition to the report, the CD includes GIS shapefiles with embedded metadata.}, pages = {17 p.}, institution = {Oregon Department of Geology and Mineral Industries}, address = {Portland, Or.}, keywords = {coastal hazards, earthquakes, general, maps, mathematical modeling, Oregon, tsunamis}, url = {https://www.oregongeology.org/pubs/ofr/O-13-19.pdf}, author = {Priest, George R. and Witter, Robert C. and Zhang, Y. Joseph and Wang, Kelin and Goldfinger, Chris and Stimely, Laura L. and English, John T. and Pickner, Sean G. and Hughes, Kaleena L. B. and Wille, Taylore E. and Smith, Rachel L. and Oregon. Department of Geology and Mineral Industries,} } @article {36201, title = {Hatfield Marine Science Center Dynamic Revetment Report DSL Permit $\#$45455-FP Monitoring Report February, 2012}, year = {2012}, note = {This is the first of a series of five annual reports concerning control of erosion along Yaquina Bay next to the Hatfield Marine Science Center. Parts of the shoreline were stabilized in 2007 and 2011. Before more dynamic revetments will be permitted, a five-year study of nearby unmodified shorelines is required. {\textquotedblleft}A Dynamic Revetment (gravel beach) was installed in November, 2011 on the shoreline along the northeastern edge of the HMSC to mitigate erosion that threatened HMSC critical infrastructure. Shoreline topographic and biological monitoring was initiated before and continued after the project completion. Monitoring of beach profiles along the project area showed that a Dynamic Revetment installed in 2007 had been successful in stabilizing further retreat of the beach. As of January 2012, the2011 project also appears to have stabilized the shoreline, while rapid erosion has continued in the adjacent Reference beach area. {\textquotedblleft} (from the Abstract) The report includes aerial photographs, charts and color photographs.}, pages = {31 p.}, institution = {Oregon State University. Hatfield Marine Science Center}, address = {Newport, Or.}, keywords = {American Coot = Fulica Americana, amphipods, aquatic invertebrates, beach wrack, beaches, benthos, birds, coastal hazards, erosion, fish, Hatfield Marine Science Center, Pacific staghorn sculpin = Leptocottus armatus, physical, Shiner perch = Cymatogaster aggregate, species list, terrestrial vegetation, wave height data, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/xd07gt292}, author = {Boehlert, George and Nelson, Walt and Allan, Jonathan and Harris, Erica and Stephensen, Shawn and Politano, Vincent and Folger, Christina L.} } @article {34441, title = {Historic and recent patterns of dissolved oxygen in the Yaquina Estuary (Oregon, USA): Importance of anthropogenic activities and oceanic conditions}, journal = {Estuarine, Coastal and Shelf Science}, volume = {92}, number = {3}, year = {2011}, note = {Dissolved oxygen (DO) levels in estuaries can drop due to human activities. They can also fall due to upwelling events offshore."This paper assesses whether there have been long-term changes in DO levels in the Yaquina Estuary, Oregon (USA) and the effect of ocean conditions on DO levels within that estuary. In addition, it compares recent DO levels in the Yaquina Estuary to historical data from other estuaries in the region and the inner Oregon shelf to evaluate whether the hypoxia recently observed on the inner shelf has previously occurred." (from the Introduction)}, month = {2011, May 1}, pages = {p.446-455}, keywords = {anoxia, dissolved oxygen, historical, upwelling, Yaquina Bay}, doi = {10.1016/j.ecss.2011.01.018}, author = {Brown, Cheryl A. and Power, James H.} } @article {26881, title = {Oregon{\textquoteright}s Non-Consumptive Recreational Ocean User Community : Understanding an Ocean Stakeholder}, volume = {no.11-001}, year = {2011}, note = {This is a study of "the non-consumptive recreational ocean user (NROU) community. The NROU group includes surfers, kayakers, boaters, divers, and many others..." (p.3) Who are marine recreationists who are not hunters or fishers? Where do they go? What factors motivate their recreational choices? How do they contribute to local economies? How do they relate to marine renewable energy such as wind or tidal power generation? This publication offers insights on these questions.}, pages = {38 p.}, institution = {Oregon Sea Grant}, address = {Corvallis, Or.}, keywords = {Agate Beach, Alsea Bay, Bayview County Park, boating, Cannon Beach, Cape Kiwanda, Cape Lookout, Coos Bay, Depoe Bay, economics, energy, environmental tourism, Nehalem Bay, Nehalem Bay State Park, Netarts Bay, Newport Pinnacles, North Jetty, Oregon Dunes National Recreational Area, Orford Reef, Port Orford, recreation, Redfish Rocks, scuba diving, Siletz Bay, Siuslaw River, South Jetty, surfing, Tillamook Bay, tourism, Whales Head Rock, Winchester Bay, Yaquina Bay}, url = {https://seagrant.oregonstate.edu/sites/seagrant.oregonstate.edu/files/sgpubs/onlinepubs/s11001.pdf }, author = {Eardley, Christopher S. and Conway, Flaxen D. L. and Oregon State University. Sea Grant College Program and National Sea Grant College Program (U.S.),} } @article {34411, title = {Biological Assessment and Essential Fish Habitat Assessment for the Construction of NOAA{\textquoteright}s Marine Operations Center-Pacific in Newport, Oregon (Township 11 South, Range 11 West, and Section 17 6th field HUC 171002040303)}, year = {2010}, note = {"This is a Biological Assessment (BA) addressing the potential effects on aquatic species currently listed or proposed for listing under the Federal Endangered Species Act (ESA) from the construction of the National Oceanic and Atmospheric Administration{\textquoteright}s (NOAA) Marine Operations Center {\textendash} Pacific (MOC-P) in Newport, Oregon." (from the Introduction) Includes maps, charts, aerial photographs, colored illustrations, architectural drawings and construction schematics.}, month = {2010, Jun. 2}, pages = {643 p.}, institution = {Pacific Habitat Services, Inc.}, address = {Wilsonville, Or.}, keywords = {Coho salmon = Oncorhynchus kisutch, depleted populations, dredging, eelgrass = Zostera marina, Green sturgeon = Acipenser medirostris, habitats, Hatfield Marine Science Center, human impacts, introduced species, killer whale = Orca orcinus, life history information, mitigation, NOAA Marine Opeations Center - Pacific, Pacific smelt = Thaleichthys pacificus, salinity, sediments, Steller sea lion=Eumetopias jubatus, water quality, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/t722h939f}, author = {van Staveren, John and Hawkins, Amy and Tumer, Craig and Groff, Dale and Lomnicky, Gregg and Pacific Habitat Services Inc.,} } @article {51281, title = {Geochemistry and petrology of late Eocene Cascade Head and Yachats Basalt and alkalic intrusions of the central Oregon Coast Range, U.S.A.}, journal = {Journal of Volcanology and Geothermal Research}, volume = {198}, number = {3-4}, year = {2010}, note = {Did the volcanic rocks in the Oregon Coast Range originate from {\textquotedblleft}magmetism associated with extension of the coast ranges{\textquotedblright} or did they come from {\textquotedblleft}hot spots associated with mantle plumes,{\textquotedblright} possibly even related to the Yellowstone hot spot? (p.311) The authors of this paper use geochemical and isotopic data to inform their discussion of the probable origins of these deposits. }, month = {2010, Dec.15}, pages = {p.311-324}, keywords = {basalt, Blodgett Peak, Butler Peak, Cannibal Mountain, Cape Perpetua, Cascade Head Basalt, Cougar Mountain, geology, Heceta Head, Horner Ranch, paleosciences, Siletz River Volcanics, Table Mountain, volcanism, Yachats Basalt, Yaquina Head}, doi = {10.1016/j.jvolgeores.2010.09.016}, author = {Parker, D. F. and Hodges, F. N. and Perry, A. and Mitchener, M. E. and Barnes, M. A. and Ren, M.} } @article {34386, title = {Joint Permit Application [NOAA Marine Operations Center - Pacific Relocation]}, year = {2010}, note = {This is the application filed by the Port of Newport with the Army Corps of Engineers for permission to alter Yaquina Bay in order to allow the NOAA Marine Operations Center for the Pacific fleet to relocate from the Seattle area to Newport. "The construction of the MOC-P includes the demolition of existing structures (in-water as wellas upland structures), pile installation, wharf and access pier construction, as well as the construction of the upland facilities, including an administrative building and warehouse. The use of steel piles will require the installation of a cathodic protection system. Dredging and excavation to provide appropriate depths for NOAA ships to berth, as well as the placement of riprap for slope stabilization is also necessary." (p.4) Includes timeline, maps, tables, architectural drawings and construction schematics.}, pages = {102 p.}, keywords = {Bentnose clam = Macoma nasuta, Butter clam = Saxidomus giganteus, dredging, Dungeness crab = Metacarcinus magister (Cancer magister), eelgrass = Zostera marina, English sole = Parophrys vetulus, green algae, harbors, Hatfield Marine Science Center, human impacts, mitigation, mysids, NOAA Marine Opeations Center - Pacific, Pacific sea blenny = Lumpenus sagitta, Port of Newport, ports, salinity, sediments, shiner perch = Cymatogaster aggregata, Ulva species. Enteromorpha species, water quality, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/00000038x}, author = {Port of Newport, and Pacific Habitat Services,} } @article {34381, title = {Long Form Fishing Community Profile: Newport, Oregon}, volume = {no.10-002}, year = {2010}, note = {This is a community profile of the fishing industry in Newport, Oregon. "The project took an innovative approach and involved members of the fishing community interviewing their own peers, providing a depth of information not frequently available to scientists. The data gathered was intended to supplement NOAA Fisheries {\textquotedblleft}short form{\textquotedblright} community profiles..." Good quotes from members of the fishing industry.}, pages = {16 p.}, institution = {Oregon Sea Grant}, address = {Corvallis, Or.}, keywords = {behavior, commercial fisheries, demographics, economics, Port of Newport}, url = {https://seagrant.oregonstate.edu/sites/seagrant.oregonstate.edu/files/sgpubs/onlinepubs/s10002.pdf}, author = {Package, Christina and Conway, Flaxen D. L.} } @article {34396, title = {Red alder (Alnus rubra) distribution influences nitrate discharge to coastal estuaries: comparison of two Oregon watersheds}, journal = {Northwest Science}, volume = {84}, number = {4}, year = {2010}, note = {The Yaquina River typically carries almost twice as high a rate of dissolved nitrogen into its bay as does the Alsea River, although the total volumes are similar, because the Alsea River Basin is about twice as large as the Yaquina Basin. The difference in nitrogen load seems to be derived from the heavy alder stands in the upper Yaquina basin. Gives a model for rapid estimate of nitrogen export based on hardwood cover and water discharge data.}, pages = {p.336-350}, keywords = {Alsea Bay, nitrate-nitrite, nitrogen, red alder = Alnus rubra, terrestrial vegetation, Yaquina Bay}, doi = {10.3955/046.084.0403}, author = {Sigleo, Anne C. and Frick, Walter E. and Prieto, Lourdes} } @article {34391, title = { A tsunami forecast model for Newport, Oregon}, volume = {5}, year = {2010}, note = {This document reports on the development of a tsunami forecast model for Yaquina Bay. The authors used 11 past Pacific basin earthquakes, from the 1946 Unimak to the 2007 Chile events, to generate a model that would explain the wave heights experienced at Yaquina Bay and to predict future wave heights. Although this publication does not make any predictions about "The Big One," it does report on past wave heights. Extensive color illustrations show how the waves affected the Bay. "NOAA OAR Special Report." This publication is also numbered as Contribution No. 3344 from NOAA/Pacific Marine Environmental Laboratory and Contribution No. 1771 from Joint Institute for the Study of the Atmosphere and Ocean (JISAO).}, month = {2010, Mar.}, pages = {80 p.}, keywords = {coastal hazards, earthquakes, tsunamis, wave data, wave height, Yaquina Bay}, url = {https://nctr.pmel.noaa.gov/forecast_model_reports/final_reports/05_NewportOR_3344_web.pdf}, author = {Righi, Dylan and Arrcas, Diego and Pacific Marine Environmental Laboratory,} } @inbook {34276, title = {Geoarchaeological themes in a dynamic coastal environment, Lincoln and Lane Counties, Oregon}, booktitle = {Volcanoes to Vineyards: Geologic Field Trips through the Dynamic Landscape of the Pacific Northwest}, series = {Field guide (Geological Society of America)}, volume = {15}, year = {2009}, note = {"In many ways, the modern Oregon coastline bears little resemblance to that associated with prehistoric coastal peoples prior to 3000 years ago..." (from the abstract). Examines how geological forces (earthquakes, sea level rise) have changed the landscape and obscured early peoples{\textquoteright} occupations of the area. First stop on the tour is at the main HMSC parking lot, and the second stop is at Yaquina Head. Mentions Siletz, Yaquina, Alsea, Yachats and Siuslaw paleorivers. Includes maps showing paleorivers and what was above water before all the ice melted.}, pages = {p.332-348}, publisher = {Geological Society of America}, organization = {Geological Society of America}, address = {Boulder, Colo.}, keywords = {archeology, Florence dune sheet, geology, Neptune State Park, Oregon State University Hatfield Marine Science Center, paleosciences, subsidence, tsunamis, Yaquina Bay, Yaquina Head}, url = {https://www.researchgate.net/publication/290241966_Geoarchaeological_themes_in_a_dynamic_coastal_environment_Lincoln_and_Lane_Counties_Oregon}, author = {Davis, Loren G. and Jenevein, Steven A. and Punke, Michele L. and Noller, Jay S. and Jones, Julia A. and Willis, Samuel C.} } @mastersthesis {34296, title = {Improving Community Profiles for Oregon Fisheries and Coastal Communities through Collaboration}, year = {2009}, note = {This Masters thesis describes a collaborative ethnographic project in which "members of the fishing community" interviewed "their own peers." Data gathered is meant to supplement community profiles done by NOAA in 2007. The thesis discusses methodology and results, and includes profiles of Garibaldi, Newport and Port Orford. Good quotes from the fishing community. Major professor was Bryan Tilt.}, pages = {109 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.A.}, chapter = {Dept. of Anthropology, Applied Anthropology}, address = {Corvallis, Or.}, keywords = {commercial fisheries, demographics, Port of Garibaldi, Port of Newport, Port Orford, theses}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/vh53wx899}, author = {Package, Christina} } @article {34301, title = {Toledo Waterfront Connectivity Plan}, year = {2009}, pages = {79 p.}, institution = {Parametrix, Inc.}, address = {Portland, Or.}, keywords = {economics, industrial development, land ownership, land use, physical modification, Toledo, Yaquina River}, author = {Parametrix, Inc., and Port of Toledo (Or.),} } @article {34216, title = {Re-emergence of Vibrio tubiashii in bivalve shellfish aquaculture: severity, environmental drivers, geographic extent and management}, journal = {Diseases of Aquatic Organisms}, volume = {82}, year = {2008}, note = {An outbreak of vibriosis that appeared on the West Coast in the summer of 2006 and peaked in 2007 is described, along with methods of reducing contamination. Relationships between oyster die-offs and severe upwellings and El Nino are suggested. "We first recorded a severe outbreak of vibriosis, for which the etiological agent was later confirmed to be toxigenic Vibrio tubiashii, in 1998 from a hatchery on Netarts Bay. The SST [sea surface temperature] during this period was unusually elevated and remarkably similar to the elevated temperature regime observed in 2007, when severe vibriosis re-emerged."}, pages = {p.119-134}, keywords = {aquaculture, molluscs, Netarts Bay, shellfish disease, Vibrio tubiashii, Yaquina Bay}, doi = {10.3354/dao01982}, url = { https://www.int-res.com/articles/dao_oa/d082p119.pdf}, author = {Elston, Ralph A. and Hasegawa, Hiroaki and Humphrey, Karen L. and Polyak, Ildiko K. and Hase, Claudia C.} } @article {34101, title = {Laboratory and field evidence for structural habitat affinity of young-of-the-year lingcod}, journal = {Transactions of the American Fisheries Society}, volume = {135}, number = {6}, year = {2006}, note = {Juvenile lingcod were captured in Yaquina Bay. Their habitat preferences were studied in the laboratory, then fish were radio-tagged and released in the bay, and those habitat preferences were studied. Juvenile lingcod seem to prefer relatively deep water and structurally complex sites that provide refuge from predators.}, pages = {p.1622-1630}, keywords = {behavior, habitats, life history information, Lingcod = Ophiodon elongatus, Yaquina Bay}, doi = {10.1577/T05-164.1}, author = {Petrie, M. E. and Ryer, C. H.} } @article {83007, title = {Pacific Northwest Coast Ecoregional Assessment}, year = {2006}, note = {{\textquotedblleft}Prepared by The Nature Conservancy, the Nature Conservancy of Canada, and the Washington Department of Fish and Wildlife.{\textquotedblright} This is a very broad ecological assessment for the Pacific Northwest: British Columbia, Washington and Oregon. {\textquotedblleft}The purpose of the Pacific Northwest Coast ecoregional conservation assessment was to identify an efficient suite of conservation sites that will contribute toward the long-term survival of all viable native plant and animal species and natural communities in the ecoregion.{\textquotedblright} (p.ix) This document is accompanied by appendices indicating sites of interest. V.1 - main report, v.2 - appendices, v.3 - maps. Appendices: https://ir.library.oregonstate.edu/concern/defaults/sb397d851 Maps: https://ir.library.oregonstate.edu/concern/defaults/v692tc30m}, pages = {129 p.}, institution = {The Nature Conservancy}, address = {Portland, Or.}, keywords = {climate, depleted populations, ecosystem health, ecosystem modeling, general, habitats, human impacts}, url = {https://ir.library.oregonstate.edu/concern/defaults/8g84mr696}, author = {VanderSchaaf, Dick and Wilhere, George and Ferdana, Zack and Popper, Ken and Schindel, Michael and Skidmore, Peter and Rolph, Dave and Lachetti, Pierre and Kittel, Gwen and Crawford, Rex and Pickering, Debbie and Christy, John A.} } @article {34096, title = {Range expansion in the northeast Pacific by an estuary mud crab -- a molecular study}, journal = {Biological Invasions}, volume = {8}, number = {4}, year = {2006}, note = {Authors checked for signs of presence of the introduced Harris mud crab. Adults closely resemble the Oregon shore crab, Hemigrapsus oregonensis. First found in Yaquina Bay in 1978. "R. harrisii was discovered in ... Yaquina River 12 km from the ocean near the town of Toledo, approximately where the 10 ppt salinity isocline occurs. In Oregon, R. harrisii always occurred at salinities below 15 ppt, and rarely could be found to co-occur with H. oregonensis."}, pages = {p.565-576}, keywords = {Coos Bay, Harris mud crab = Rhithropanopeus harrisii, introduced species, Netarts Bay, Oregon shore crab = Hemigrapsus oregonensis, Tillamook Bay, Umpqua River, Yaquina Bay}, doi = {10.1007/s10530-005-0160-1}, author = {Petersen, Christine} } @mastersthesis {34031, title = {Habitat Associations and Determinants of Refuge Use in Post-Settlement Lingcod (Ophiodon elongatus)}, year = {2005}, note = {Juvenile lingcod were radio-tagged and monitored as they spent time in Yaquina Bay. All preferred complex habitat such as rocks, shells or seagrass, including habitats modified by humans such as docks, pilings or a bridge, over bare sands. Major professors were Cliff Ryer and David Sampson. }, month = {2005}, pages = {58 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fisheries and Wildlife}, address = {Corvallis, Or.}, keywords = {behavior, biological, habitats, lingcod=Ophiodon elongatus, Oregon State University Hatfield Marine Science Center, theses}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/6q182p167}, author = {Petrie, Megan E.} } @article {34026, title = {Hatfield Marine Science Center Trail Erosion Study: Technical Report}, year = {2005}, note = {"Erosion is impacting a portion of the Estuary Nature Trail located adjacent to Oregon State University{\textquoteright}s Hatfield Marine Science Center (HMSC) facility, located on the south side of the Yaquina Bay estuary approximately one mile from the open waters of the Pacific Ocean. The HMSC Estuary Nature Trail is important to many trail users, as it is the only trail in the Yaquina Bay estuary running along side the bay." (From the Background section, p.1-1) Includes color photographs and color infrared aerial photographs.}, pages = {32 p.}, address = {Bellevue, Wa.}, keywords = {coastal hazards, erosion, Hatfield Marine Science Center, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/4j03d0096}, author = {Parametrix, Inc.} } @article {34036, title = {A telemetry study of downstream coho smolt movement in the Yaquina River and estuary [abstract only]}, journal = {American Fisheries Society. Oregon Chapter. Meeting \& Symposium. Annual meeting \& symposium}, year = {2005}, note = {Presented at Oregon Chapter of the American Fisheries Society, Corvallis, OR, February 16 - 18, 2005.}, month = {2005}, pages = {80-81}, keywords = {biological, coho salmon=Oncorhynchus kisutch, Yaquina Bay, Yaquina River}, author = {Power, James H. and Johnson, Steven L. and Wilson, Derek} } @article {26196, title = {Oregon Wetland Planning Guidebook}, year = {2004}, note = {This is a valuable, if dated, look at the regulatory process for wetlands in Oregon: the decision-making process and the agencies involved. }, pages = {198 p.}, institution = {Oregon Dept. of State Lands, Oregon Dept. of Land Conservation and Development}, address = {Salem, Or.}, keywords = {aquatic vegetation, environmental law and policy, general, land ownership, land use, marsh restoration, natural resource management, salt marsh, wetland delineation, wetland mitigation, wetland restoration, wetland vegetation}, url = {https://ir.library.oregonstate.edu/concern/defaults/kd17cx459}, author = {Oregon. Dept. of State Lands, and Oregon. Dept. of Land Conservation and Development, and Shapiro \& Associates (Seattle, Wash.), and Winterbrook Planning} } @article {33951, title = {Temporal changes in the prevalence of parasites in two Oregon estuary-dwelling fishes}, journal = {Journal of Parasitology}, volume = {90}, number = {3}, year = {2004}, month = {2004}, pages = {564-571}, keywords = {biological, English sole=Pleuronectes vetulus, fish disease, Lower Yaquina River, Pacific staghorn sculpin=Leptocottus armatus, parasites, River Mile 8, Sally{\textquoteright}s Slough, Upper Yaquina River}, isbn = {0022-3395, 022-3395}, doi = {10.1645/GE-3057}, author = {Olson, Robert E. and Pierce, Jack R. and Jacobson, Kym C. and Burreson, Eugene M.} } @article {33891, title = {Cascadia tsunami deposit database [electronic resource]}, volume = {no.03-13}, year = {2003}, pages = {24 p.}, institution = {U.S. Geological Survey}, address = {[Menlo Park, Calif.]}, keywords = {bibliography, coastal hazards, earthquakes, geology, landslides, tsunamis}, url = {https://pubs.usgs.gov/of/2003/0013/pdf/of03-13.pdf}, author = {Peters, Robert and Jaffe, Bruce and Gelfenbaum, Guy and Peterson, Curt D.} } @article {33856, title = {Challenges and strategies for better use of scientific information in the management of coastal estuaries}, journal = {Estuaries}, volume = {26}, number = {4B}, year = {2003}, note = {From the PNCERS Study, a seven-year program that focused on four estuaries in Washington and Oregon: Gray{\textquoteright}s Harbor, Willapa Bay, Yaquina Bay and Coos Bay. This article also considers Tillamook Bay. Examines environmental indicators, environmental threats, and information management.}, pages = {1189-1204}, doi = {10.1007/BF02803373}, author = {Leschine, Thomas M. and Ferriss, Bridget E. and Bell, Kathleen P. and Bartz, Krista K. and MacWilliams, Sarah and Pico, Michelle and Bennett, Andrew K.} } @article {33881, title = {Estuary management in the Pacific Northwest : an overview of programs and activities in Washington, Oregon, and Northern California}, volume = {no.03-001}, year = {2003}, note = {Useful information tables and brief descriptions. This report has been prepared in support of the Pacific Northwest Coastal Ecosystems Regionals Study (PNCRS) to provide a summary and compendium of the management of estuaries in the Pacific Northwest of the United States. Federal, state and local government management programs and any significant special programs are summarized, and the management of each major estuary is referenced. (From Introduction)}, month = {2003}, pages = {126 p.}, institution = {Oregon State University}, address = {Corvallis, Or.}, keywords = {biological, general ecosystem description, natural resource management, physical, Yaquina Bay}, url = {https://repository.library.noaa.gov/view/noaa/41484/noaa_41484_DS1.pdf} } @article {33886, title = {Seabirds as indicators: an exploratory analysis of physical forcing in the Pacific Northwest coastal environment}, journal = {Estuaries}, volume = {26}, number = {4B}, year = {2003}, note = {From the PNCERS Study, a seven-year program that focused on four estuaries in Washington and Oregon: Gray{\textquoteright}s Harbor, Willapa Bay, Yaquina Bay and Coos Bay. This paper compares Tatoosh Island on the Olympic Peninsula with Yaquina Head. The spring transition affects breeding and foraging success. Indicator species, carrying capacity.}, pages = {1044-1057}, keywords = {common murre = Uria aalge, Yaquina Head}, doi = {10.1007/BF02803362}, author = {Parrish, Julia K. and Zador, Stephani G.} } @inbook {33876, title = {Yaquina Bay, Oregon}, booktitle = {Where the River Meets the Sea: Case Studies of Pacific Northwest Estuaries}, year = {2003}, note = {Excellent overview of the area at the turn of the century. Demographics, economy, recreation, hydrology, weather, indicator species, seabirds, fishing, oyster production. Maps, good charts, comparisons with other estuaries.}, pages = {p.83-105}, publisher = {Pacific Northwest Coastal Ecosystems Regional Study}, organization = {Pacific Northwest Coastal Ecosystems Regional Study}, address = {Seattle, Wa.}, keywords = {Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, Coos Bay, Dungeness crab = Metacarcinus magister (Cancer magister), Pacific oyster = Crassostrea gigas, Pink shrimp = Pandalas jordani, Rockfish = Sebastes spp., Yaquina Bay}, editor = {Litle, Kate and Parrish, Julia K.} } @article {13776, title = {Recovery of wild salmonids in Western Oregon lowlands}, volume = {no.2002-1}, year = {2002}, note = {Focus on lower rivers and estuaries. Good summaries of states of streams. Appendix B gives stream miles that meet EPA 303(d) water quality standards.}, pages = {169 p.}, institution = {Independent Multidisciplinary Science Team,}, address = {Salem, Or.}, keywords = {estuaries, habitat restoration, human impacts, Oncorhynchus spp., salmon}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/7d278t113}, author = {Independent Multidisciplinary Science Team, and Buckhouse, John and Elmore, Wayne and Gregory, Stanley and Kavanagh, Kathleen and Pearcy, William G. and Schreck, Carl B.} } @article {33786, title = {Vulnerability assessment of a port and harbor community to earthquake and tsunami hazards: integrating technical expert andstakeholder input.}, journal = {Natural Hazards Review}, volume = {3}, number = {4}, year = {2002}, month = {2002}, pages = {148-157}, keywords = {physical, Port of Newport, Toledo, tsunamis, Yaquina Bay, Yaquina River}, doi = {doi.org/10.1061/(ASCE)1527-6988(2002)3:4(148)}, author = {Wood, Nathan J. and Good, James W. and Godwin, R.F and Oregon State University. Sea Grant College Program} } @inbook {76661, title = {Magnetic stratigraphy and tectonic rotation of the Oligocene Alsea, Yaquina, and Nye Formations, Lincoln County, Oregon}, booktitle = {Magnetic stratigraphy of the Pacific Coast Cenozoic : a symposium volume based on Proceedings of the 1997 Pacific Section AAPG-SEPM Meeting, Bakersfield, California, and the 2001 Pacific Section AAPG-SEPM-Cordilleran Section GSA Meeting}, series = {Book (SEPM (Society for Sedimentary Geology). Pacific Section) }, volume = {91}, year = {2001}, note = {{\textquotedblleft}The Alsea Formation, Yaquina Sandstone, and Nye Mudstone make up a sequence of almost 3300 m of Oligocene-Miocene marine strata. It is one of the thickest and most continuous records of the mid-Cenozoic in Oregon, yet dating of these rocks has been imprecise in the past.{\textquotedblright} (from the Abstract)}, pages = {p.184-194}, publisher = {Pacific Section SEPM}, organization = {Pacific Section SEPM}, address = {Fullerton, CA}, keywords = {Alsea Bay, Alsea Formation, geology, Magnetism, microfossils, Nye Mudstone, paleosciences, plankton, stratigraphy, Yaquina Bay, Yaquina Sandstone}, author = {Prothero, Donald R. and Bitboul, Clio Z. and Moore, George W. and Niem, Alan R. and American Association of Petroleum Geologists. Pacific Section, and Geological Society of America. Cordilleran Section,} } @conference {33626, title = {Secondary production in coastal estuaries: Dungess crab and English sole as bioindicators}, booktitle = {Pacific Northwest Coastal Ecosystems Regional Study Annual Report}, series = {PNCERS Annual Report 2001}, year = {2001}, note = {This aspect of the PNCERS program is intended to provide a sense of spatial,temporal distribution and abundance of certain macrofauna in Oregon and Washington coastal estuaries.}, month = {2002}, pages = {p.79-90}, publisher = {Coastal Ocean Programs, NOAA}, organization = {Coastal Ocean Programs, NOAA}, keywords = {abundance, biological, breakwater, dungeness crab=Metacarcinus magister (Cancer magister), English sole=Pleuronectes vetulus, Grassy Point, habitats, The Bend, Yaquina Bay, Yaquina Bay Bar}, url = {https://ir.library.oregonstate.edu/concern/defaults/x346d5217}, author = {Armstrong, David A. and Gunderson, Donald and Rooper, Chris}, editor = {Parrish, J.K. and Litle, Kate} } @article {83287, title = {Socio-economic dynamics of Pacific Northwest estuaries}, year = {2001}, note = {In this chapter, we begin by describing the regional economies and human populations of the areas surrounding five Pacific Northwest estuaries: Grays Harbor and Willapa Bay in Washingon, and Coos Bay, Yquina Bay and Tillamook Bay in Oregon. Recognizing the nature of the local economies and the demographic characteristics of residents is fundamental to establishing the socio-economic baslein. In the second and third sections, we build on the baseline descriptions and focus on important findings from the Coastal Resident Survey and Coastal Visitor Survey.}, pages = {p.58-75}, institution = {Coastal Ocean Programs, NOAA}, keywords = {biological, demographics, economics, human impacts, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/defaults/4m90dw29q}, author = {Bell, Kathleen and Farley, Christopher and Huppert, Daniel and Johnson, Rebecca and Leschine, Thomas}, editor = {Parrish, J.K. and Litle, Kate} } @article {33601, title = {Draft Environmental Assessment: National Marine Fisheries Service, Proposed HMSC Newport Facility, Newport, Oregon}, year = {2000}, note = {June, 2000. Good photos of site.}, pages = {56 p.}, institution = {National Oceanic and Atmospheric Administration}, address = {Seattle, WA}, keywords = {general, human impacts, Oregon State University Hatfield Marine Science Center}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/d217qq04p}, author = {PBS Environmental, and National Oceanic and Atmospheric Administration. Western Administrative Support Division} } @article {33596, title = {The European green crab bivalve consumption rates and prey preferences}, journal = {Journal of Shellfish Research}, volume = {19}, number = {1}, year = {2000}, month = {June_2000}, pages = {632}, keywords = {bent-nose clam=Macoma nasuta, biological, California softshell=Cryptomya californica, feeding behavior, green crab=Carcinus maenas, Japanese littleneck=Tapes phillippinarum, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Oregon State University Hatfield Marine Science Center, Yaquina Bay}, author = {Palacios, Kelly C. and Ferraro, Steven P.} } @article {33701, title = {Indicators of west coast estuary health}, year = {2000}, note = {"In this chapter, we attempt to lay out a conceptual framework for indicator selection germane to the West Coast estuaries, including those studied extensively by PNCERS researchers. In the latter half of the chapter we offer an annotated list of candidate indicators for each of the three system components: the physical environment, the socio-economic system, and the the biological system. A concurrent table presents all candidate indicators, their constituent measures and proxies (if appropriate) and the relevant estuarine types within which the indicators are valuable." (Author excerpt)}, month = {2001}, pages = {p.1-20}, institution = {Coastal Ocean Programs, NOAA}, keywords = {biological, general ecosystem description, physical, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/defaults/x346d5217}, author = {Parrish, Julia K. and Bell, Kathleen and Logerwell, Elizabeth and Roegner, Curtis}, editor = {Parrish, J.K. and Litle, Kate} } @article {33631, title = {Socio-economic dynamics of Pacific Northwest estuaries}, year = {2000}, note = {In this chapter, we begin by describing the regional economies and human populations of the areas surrounding five Pacific Northwest estuaries: Grays Harbor and Willapa Bay in Washingon, and Coos Bay, Yquina Bay and Tillamook Bay in Oregon. Recognizing the nature of the local economies and the demographic characteristics of residents is fundamental to establishing the socio-economic baslein. In the second and third sections, we build on the baseline descriptions and focus on important findings from the Coastal Resident Survey and Coastal Visitor Survey.}, month = {2001}, pages = {p.58-75}, institution = {Coastal Ocean Programs, NOAA}, keywords = {biological, demographics, economics, human impacts, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/defaults/4m90dw29q}, author = {Bell, Kathleen and Farley, Christopher and Huppert, Daniel and Johnson, Rebecca and Leschine, Thomas}, editor = {Parrish, J.K. and Litle, Kate} } @proceedings {33511, title = {The arrival of the European green crab, Carcinus maenas, in Oregon estuaries}, volume = {no.99-004}, year = {1999}, note = {Conference held Jan_27-29 1999.}, pages = {p.94-99}, publisher = {Massachusetts Institute of Technology, Cambridge MA}, address = {Massachusetts Institute of Technology, Cambridge MA}, keywords = {biological, Columbia River estuary, Coos Bay estuary, Coquille River estuary, green crab=Carcinus maenas, introduced species, life history information, Netarts estuary, Oregon State University Hatfield Marine Science Center, Salmon River Estuary, Siletz River estuary, Siuslaw River estuary, Tillamook estuary, Umpqua River estuary, Yaquina Bay}, isbn = {1561720259}, author = {Yamada, Sylvia B. and Hunt, Chris and Richmond, N.}, editor = {Pederson, J} } @article {76991, title = {Identification and Description of Essential Fish Habitat, Adverse Impacts, and Recommended Conservation Measures for Salmon. Amendment 14 to the Pacific Coast Salmon Plan}, year = {1999}, note = {An important guide to essential habitats and requirements of three species of salmon, and the challenges facing them. Illustrated. At head of title: Appendix A. This guide was updated in 2014: https://www.pcouncil.org/documents/2019/08/salmon-efh-appendix-a.pdf/ }, pages = {146 p.}, institution = {Pacific Fishery Management Council}, address = {Portland, Or. }, keywords = {agriculture, Alsea River, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, Coos River, Coquille River, dams, depleted populations, dredging, environmental law and policy, erosion, habitats, human impacts, irrigation, life history information, logging, mining, N. Umpqua River, natural resource management, Necanicum River, Nehalem River, North American beaver = Castor canadensis, Pink salmon (humpback) = Oncorhynchus gorbuscha, Rogue River, S. Umpqua River, sediments, Siletz Yaquina River, Siltcoos River, Siuslaw River, Sixes River, Umpqua River, water pollution, water temperature, Wilson - Trask {\textendash} Nestucca}, author = {Pacific Fishery Management Council} } @article {33496, title = {Littoral cell response to interannual climatic forcing 1983-1987 on the Central Oregon Coast, USA}, journal = {Journal of Coastal Research}, volume = {6}, number = {1}, year = {1999}, note = {Discusses the migration of sand in a littoral cell from south Lincoln County, Oregon beaches following the El Nino of 1982-83, and the eventual reappearance of the sand. Black-and-white photographs, graphs, charts. Deals with the Seal Rock littoral cell (from Yaquina Head to Cape Perpetua). Mostly about beaches, but does compare sand flow to the ocean from Yaquina Bay and Alsea Bay.}, month = {1999, Winter}, pages = {p.87-110}, keywords = {Alsea Bay, Alsea Spit, climate, erosion, wave height data}, author = {Peterson, Curt D. and Jackson, Philip L. and O{\textquoteright}Neil, Douglas J. and Rosenfeld, Charles L. and Kimerling, A. Jon} } @mastersthesis {33501, title = {Sublethal Effects of Estuarine Carbaryl Applications on Juvenile English Sole (Pleuronectes vetulus)}, year = {1999}, note = {Major professor was Lavern Weber.}, month = {1999}, pages = {105 p.}, school = { Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Environmental and Molecular Toxicology}, address = {Corvallis, Or.}, keywords = {biological, chemical, English sole=Pleuronectes vetulus, Oregon State University Hatfield Marine Science Center, pesticides, theses}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/8g84mq05f}, author = {Pozarycki, Scott V.} } @article {33451, title = {Toxicity and phototoxicity of mixtures of highly lipophilic PAH compounds in marine sediment: can the _PAH model be extrapolated?}, journal = {Archives of Environmental Contamination and Toxicology}, volume = {36}, year = {1999}, month = {1999}, pages = {270-280}, keywords = {Alsea River estuary, amphipods, aquatic invertebrates, biological, chemical, crustaceans, light, Rhepoxynius abronius, sediments, toxicity, water pollution, Yaquina Bay}, author = {Boese, Bruce L. and Ozretich, Robert J. and Lamberson, Janet O. and Swartz, Richard C. and Cole, Faith A. and Pelletier, Judith and Jones, Jill K.P.} } @proceedings {33381, title = {Change in Pacific Northwest coastal ecosystems: proceedings of the Pacific Northwest Coastal Ecosystems Regional Study Workshop}, volume = {no.11}, year = {1998}, note = {"This document presents the results of a workshop conducted during August, 1996, to better define a research agenda to study the combined effects of natural variability and anthropogenic change in Pacific Northwest coastal ecosystems." (p.3) Meeting held August 3-4,1996.}, pages = {342 p.}, publisher = {NOAA Coastal Ocean Office}, address = {Troutdale, Or.}, keywords = {biological, chinook salmon=Oncorhynchus tshawytscha, chum salmon=Oncorhynchus keta, coastal upwelling, Columbia River estuary, community ecology, Coos River estuary, ecological succession, ecological values, ecosystem modeling, environmental policy and law, estuarine dynamics, general, general ecosystem description, historical, human impacts, land use, Pacific salmonids=Oncorhynchus species, physical, physical modifications, population biology, steelhead=Oncorhynchus mykiss (rainbow trout=Salmo gairdneri), Yaquina Bay, Yaquina River, Yaquina River Basin}, url = {https://repository.library.noaa.gov/view/noaa/1668}, author = {McMurray, Gregory R. and Robert J Bailey} } @mastersthesis {33411, title = {Kinship, Environment and the Forest Service: Homesteading in Oregon{\textquoteright}s Coast Range}, year = {1998}, note = {Examines the "settlement history of a remote area in the Coast Range of Oregon, from the 1870s to the 1930s." The "remote area" covers parts of both the Alsea and Yaquina watersheds.Takes a look at all 89 homestead claimants from Township 12 South, Range 9 West, Willamette Meridian. Who succeeded? Who didn{\textquoteright}t? What made a successful homesteader? Two homesteads are examined in depth. Maps, photographs, oral histories, much source material. M.A.I.S. thesis. Major professor was David Brauner.}, pages = {273 p.}, school = {Oregon State University}, type = {Master of Arts in Interdisciplinary Studies}, edition = {M.A.I.S.}, chapter = {Anthropology, Historic Preservation and Forest Resources}, address = {Corvallis, Or.}, keywords = {agriculture, Alsea River Basin, archeology, Bull Creek, Cape Horn Creek, Drift Creek, Elk Creek, Gopher Creek, Grant Creek, historical, human impacts, logging, Nettle Creek, Savage Creek, theses, Yaquina River Basin}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/db78tj125}, author = {Prior, Jan M.} } @article {33271, title = {Cascadia subduction zone tsunamis: hazard mapping at Yaquina Bay, Oregon: Final technical report to the National Earthquake Hazard Reduction Program}, volume = {no.0-97-34}, year = {1997}, month = {Dec_1997}, institution = {Department of Oregon Geology and Mineral Industries}, address = {Portland, OR}, keywords = {flooding, geological, tsunamis, Yaquina Bay}, url = {https://pubs.oregon.gov/dogami/ofr/O-97-34.pdf}, author = {Priest, George R. and Myers, Edward and Baptista, Antonio M. and Fleuck, Paul and Wang, Keline and Kamphaus, Robert A. and Peterson, Curt D.} } @article {33276, title = {Chronic geologic hazard map of the Newport area, coastal Lincoln County, Oregon}, volume = {no.O-97-26}, year = {1997}, note = {Revision of 1994 map. O-97-26}, month = {[1997]}, publisher = {Oregon Department of Geoglogy and Mineral Industries}, type = {Physical relief map}, address = {Portland, Or.}, keywords = {bathymetry, coastal hazards, dredging, Main channel, map, physical, west of Yaquina Bay Bridge, Yaquina Bay}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A859}, author = {Priest, George R. and Neuhaus, Mark E. and Saul, Ingmar and Diebenow, Julie and Oregon. Dept. of Geology and Mineral Industries,} } @article {33281, title = {Chronic geologic hazard map of the South Beach area, coastal Lincoln County, Oregon}, volume = {no.O-97-27}, year = {1997}, note = {Revision of 1994 map. Open-file report O-97-27}, month = {[1997]}, publisher = {Oregon Department of Geoglogy and Mineral Industries}, type = {Physical relief}, address = {Portland, OR}, keywords = {bathymetry, coastal hazards, dredging, Main channel, map, physical, South Beach, west of Yaquina Bay Bridge, Yaquina Bay}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A875}, author = {Priest, George R. and Neuhaus, Mark E. and Saul, Ingmar and Diebenow, Julie and Oregon. Dept. of Geology and Mineral Industries,} } @article {36376, title = {Coastal shoreline change study, northern and central Lincoln County, Oregon}, volume = {no.O-97-11}, year = {1997}, note = {This report is related to a series of erosion and flood control maps, Open-file reports no.97-12 {\textendash} 97-30. It is also related to an earlier series of erosion maps, Open-file reports no.94-11 {\textendash} 94-30, the Chronic geologic hazard maps of coastal Lincoln County, Oregon, and covers the same territory. Readers of this report will probably be interested in Open-file report no.93-10, the Pilot erosion rate data study of the central Oregon coast, Lincoln County., which is a much longer report on erosion issues in this area. This report is concerned with mapping erosion reference features on a 31-mile stretch of the Oregon coast in Lincoln County, and including a 100-year flood zone reference in the maps. The report touches briefly on erosion at the Siletz Spit, Gleneden Beach, Agate Beach, and Jump-off Joe. Photocopies of aerial photographs and b+w photographs.}, month = {1997, Nov.}, pages = {19 p.}, institution = {Oregon. Dept. of Geology and Mineral Industries,}, address = {Portland, Or. }, keywords = {Agate Beach, Alsea River, Beaver Creek, Cascade Head, coastal hazards, erosion, flooding, geology, Gleneden Beach, historical, Jump-Off Joe, landslides, Lincoln County (Or.), paleosciences, Salmon River, Seal Rock, Siletz River, Siletz Spit, Yaquina River}, url = {https://pubs.oregon.gov/dogami/ofr/O-97-11.pdf}, author = {Priest, George R.} } @article {33261, title = {Tsunami hazard map of the Yaquina Bay area, Lincoln County, Oregon}, volume = {no.2}, year = {1997}, note = {IMS-2 (Interpretative Map Series no. 2). Colored sheet. Scale: 1:12,000.}, institution = { Oregon Department of Geology and Mineral Industries}, type = {Physical relief}, address = {[Portland, Or.]}, keywords = {bathymetry, coastal hazards, dredging, Main channel, map, physical, tsunamis, west of Yaquina Bay Bridge, Yaquina Bay}, url = {https://digital.osl.state.or.us/islandora/object/osl:817}, author = {Oregon. Dept. of Geology and Mineral Industries, and Priest, George R.} } @article {33266, title = {Why Protect Yaquina Bay?}, year = {1997}, note = {Guin *Yaquina File}, keywords = {abundance, aquatic invertebrates, aquatic vegetation, biological, birds, commercial fisheries, community ecology, dredging, energy, estuarine dynamics, fish, general, geographic distribution, historical, human impacts, land use, mammals, physical modifications, recreational uses, Yaquina Bay}, author = {Osis, Vicki and Philips, Brady and Martin, Amy} } @inbook {82561, title = {Great-earthquake potential in Oregon and Washington {\textendash} an overview of recent coastal geologic studies and their bearing on segmentation of Holocene ruptures, Central Cascadia Subduction Zone}, booktitle = {Assessing Earthquake Hazards and Reducing Risk in the Pacific Northwest, v.1}, series = {U.S. Geological Survey Professional Paper}, volume = {no.1560 v.1}, year = {1996}, note = {This article gives a good overview of the discovery of the Pacific Northwest{\textquoteright}s past earthquake history and what was known about this history. Unfortunately, at the time this article was written, while studies were being done on 27 estuaries in the region, only half of the work had been completed. There is good information about Netarts, Salmon River, Siletz and Alsea Bays.}, pages = {p.91-114}, publisher = {U.S. G.P.O.}, organization = {U.S. G.P.O.}, address = {Washington, D.C.}, keywords = {Nehalem River, Nestucca River, Netarts Bay, Salmon River estuary, Siletz Bay, Alsea Bay, Siuslaw River, Umpqua River estuary, Coos Bay, South Slough, Coquille River estuary, coastal hazards, earthquakes, tsunamis, geology, paleosciences, tectonics}, url = {https://pubs.usgs.gov/pp/1560vol1/report.pdf}, author = {Nelson, Alan R. and Personius, Stephen F.}, editor = {Rogers, A.M. and Walsh, Timothy J. and Kockelman, William J. and Priest, George R.} } @article {33151, title = {Tsunami hazard map of the Newport North quadrangle, Lincoln County, Oregon}, volume = {no.O-95-28}, year = {1996}, month = {[1996]}, publisher = {Oregon Department of Geoglogy and Mineral Industries}, type = {Physical relief}, address = {Portland, Or.}, keywords = {bathymetry, coastal hazards, dredging, Main channel, map, physical, tsunamis, west of Yaquina Bay Bridge, Yaquina Bay}, url = {https://pubs.oregon.gov/dogami/ofr/O-95-28.pdf}, author = {Priest, George R. and Oregon. Dept. of Geology and Mineral Industries,} } @article {33156, title = {Tsunami hazard map of the Newport South quadrangle, Lincoln County, Oregon}, volume = {no. O-95-29}, year = {1996}, month = {[1996]}, institution = {Oregon Department of Geoglogy and Mineral Industries}, type = {Physical relief}, address = {Portland, Or.}, keywords = {bathymetry, coastal hazards, dredging, Main channel, map, physical, South Beach, tsunamis, west of Yaquina Bay Bridge, Yaquina Bay}, url = {https://pubs.oregon.gov/dogami/ofr/O-95-29.pdf}, author = {Priest, George R. and Oregon. Dept. of Geology and Mineral Industries,} } @inbook {32991, title = {Investigation of damage at the Yaquina Bay north jetty}, booktitle = {Case Histories of the Design, Construction, and Maintenance of Rubble Mound Structures}, year = {1995}, note = {aerial photographs}, pages = {p.227-249}, publisher = {American Society of Civil Engineers}, organization = {American Society of Civil Engineers}, address = {New York, NY}, keywords = {coastal hazards, dredging, general, historical, hydrology, North Jetty, physical, physical modifications, South Jetty, Yaquina Bay, Yaquina Bay Bar, Yaquina Reef}, author = {Hughes, Steven A. and Peak, Robert C. and Carver, Robert D. and Francis, James D. and Bertrand, Gregg M.}, editor = {Magoon, Orville T. and Davidson, D. D. (eds.)} } @article {49781, title = {Legislative Fellowship Final Report, 1995}, year = {1995}, note = {This document details the work done by the 1995 Oregon Sea Grant / Oregon Coastal Zone Management Association Legislative Fellow. {\textquotedblleft}The Oregon Sea Grant/OCZMA Legislative Fellowship Program began in 1987 primarily to provide students from the Oregon State University Marine Resource Management Program (MRM) with a means with which to apply academic knowledge gained in science or public policy to the real-world arena of legislative politics.{\textquotedblright} (p.1) The author was assigned to State Senator Stan Bunn{\textquoteright}s office, and worked for him, for Sea Grant and for OCZMA. The document includes summaries of legislation important to coastal communities, and brief interviews with Oregon legislators.}, month = {1995, Aug.}, pages = {59 p.}, institution = {Oregon Coastal Zone Management Association,}, address = {Salem, Or. }, keywords = {coastal hazards, Coos Bay, Coquille River estuary, dungeness crab=Metacarcinus magister (Cancer magister), earthquakes, environmental law and policy, fish screens, general, Lower Smith River, marine mammals, Pacific salmonids=Oncorhynchus spp., salmon hatcheries, tsunamis, Vincent Creek, wild salmonids}, url = {https://ir.library.oregonstate.edu/concern/defaults/8910jz376}, author = {Coontz, Julie and Oregon Coastal Zone Management Association and Oregon State University. Sea Grant College Program} } @article {32966, title = {Magnitude and frequency of subduction-zone earthquakes along the northern Oregon coast in the past 3,000 years.}, journal = {Oregon Geology}, volume = {57}, number = {1}, year = {1995}, note = {Correlates subsided marsh sediments and evidence of tsunamis among several Oregon estuaries to show record of past earthquakes in Oregon.}, pages = {p.3-12}, keywords = {Alsea Bay, Ecola Creek, Necanicum Bay, Nestucca Bay, Netarts Bay, Siletz Bay, South Slough (Coos Bay), Yaquina Bay}, url = {https://library.state.or.us/repository/2010/201009071430032/1995-01.pdf}, author = {Darienzo, Mark E. and Peterson, Curt D.} } @article {32996, title = {Monitoring of the Yaquina Bay entrance North jetty at Newport, Oregon: Summary and results}, volume = { no. 95-9}, year = {1995}, month = {July_1995}, institution = {U.S. Army Corps of Engineers Waterways Experiment Station}, address = {Vicksburg, MS}, keywords = {general, historical, human impacts, North Jetty, physical, physical modifications, wave height, Yaquina Bay}, url = {https://apps.dtic.mil/sti/pdfs/ADA299618.pdf}, author = {Hughes, Steven A. and Prickett, Terri L. and Tubman, Michael W. and Corson, William D. and U.S. Army. Corps of Engineers. Waterways Experiment Station ,} } @article {33026, title = {Preliminary reconnaissance survey of Cascadia paleotsunami deposits in Yaquina Bay, Oregon}, journal = {Oregon Geology}, volume = {57}, number = {2}, year = {1995}, month = {March_1995}, pages = {33-40}, keywords = {coastal hazards, geological, Grassy Point, Idaho Flats, King Slough, paleosciences, Parker Slough, Pooles Slough, Sally{\textquoteright}s Bend, sediment data, tsunamis, Yaquina Bay}, url = {https://pubs.oregon.gov/dogami/og/OGv57n02.pdf}, author = {Peterson, Curt D. and Priest, George R.} } @article {82156, title = {Chronic geologic hazard map of the Newport area, coastal Lincoln County, Oregon}, volume = {no.94-26}, year = {1994}, note = {Valuable information on coastal erosion. The Jump-Off Joe area has the highest rate of erosion on the Oregon Coast. {\textquotedblleft}Oregon Department of Geology and Mineral Industries Open-File Report 0-94-11 should be utilized with this map to provide detailed information on the hazard mapping techniques and appropriate use of the information.{\textquotedblright}}, institution = {Oregon Department of Geology and Mineral Industries}, address = {Portland, Or.}, keywords = {coastal hazards, erosion, geology, Jump-Off Joe, Newport (Or.), Nye Beach, Yaquina Bay}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A73090 }, author = {Priest, George R. and Oregon. Dept. of Geology and Mineral Industries,} } @article {77201, title = {Lipid class and glycogen content of the lugworm Abarenicola pacifica in relation to age, growth rate and reproductive condition}, journal = {Marine Biology}, volume = {120}, year = {1994}, note = {How do animals allocate food supplies? If food is abundant, do animals store food for future needs, or do they use the abundant supplies to facilitate reproduction? In this study, the authors studied lipids and glycogen in the Pacific lugworm for a year, in order to account for seasonal variability and reproductive cycles. They did not find seasonal variations, but the data showed that storage lipids, especially triacylglycerides, {\textquotedblleft}were strongly elevated{\textquotedblright} when eggs were formed. {\textquotedblleft}We doubt that A. pacifica is ever food-limited in Yaquina Bay. The biochemical composition and nutritive value of surface sediments in Yaquina Bay change little throughout the year{\textellipsis}{\textquotedblright}(p.294)}, pages = {p.287-295}, keywords = {annelids, aquatic invertebrates, lipids, nutrition, Pacific lugworm = Abarenicola pacifica, polychaete worms, reproduction, Yaquina Bay}, author = {Taghon, Gary L. and Prahl, F. G. and Sparrow, M. and Fuller, C.M.} } @article {32886, title = {Stratigraphic evidence for great subduction-zone earthquakes at four estuaries in northern Oregon, USA}, journal = {Journal of Coastal Research}, volume = {10}, number = {4}, year = {1994}, month = {Fall_1994}, pages = {850-876}, keywords = {Boone Slough, Butler Bridge, coastal hazards, geological, Idaho Flats, Mill Creek, Necanicum River estuary, Nestucca River estuary, paleosciences, Pooles Slough, Siletz River estuary, Yaquina Bay}, author = {Darienzo, Mark E. and Peterson, Curt D. and Clough, Charles} } @article {36361, title = {Pilot erosion rate data study of the central Oregon coast, Lincoln County: Final report to the Federal Emergency Management Agency}, volume = {no.O-93-10}, year = {1993}, note = {This report is related to Open-file reports nos. 94-11 - 94-30, the Chronic geologic hazard maps of coastal Lincoln County, Oregon. It also relates to a follow-up series of erosion and flood control maps, Open-file reports no.97-12 {\textendash} 97-30. Each segment of the coastline from Cascade Head to Seal Rock is described, along with the assumptions about the rate of erosion for that segment. Appendices address the use of historical photographs to document shoreline change. Maps, charts, rather poor photocopies of b+w photographs.}, month = {1993}, pages = {228 p.}, institution = {State of Oregon. Department of Geology and Mineral Industries}, address = {Portland, OR}, keywords = {Agate Beach, Alsea River, Beaver Creek, Cascade Head, coastal hazards, erosion, flooding, geology, historical, Jump-Off Joe, landslides, Lincoln County (Or.), Nye Beach, paleosciences, Salmon River, Seal Rock, Siletz River, Siletz Spit, Yaquina River}, url = {https://digital.osl.state.or.us/islandora/object/osl:26613}, author = {Priest, George R. and Saul, Ingmar and Diebenow, Julie} } @booklet {32811, title = {Yaquina Bay: Where the River Meets the Sea}, year = {1993}, month = {[1993]}, publisher = {Oregon State University Extension Sea Grant}, keywords = {estuarine dynamics, general, general ecosystem description, habitat conservation, human impacts, hydrology, Yaquina Bay, Yaquina River}, author = {Phillips, Brady and Osis, Vicki} } @article {32721, title = {Shorebird Numbers in Wetlands of the Pacific Flyway: a Summary of Counts from April 1988 to January 1992}, year = {1992}, note = {Summarizes waterbird census data from 1988-1991. Spring and winter shorebird abundance data for the Yaquina is given.}, pages = {18 p.}, institution = {Point Reyes Bird Observatory}, address = {Stinson Beach, Calif.}, keywords = {Alsea Bay, Bandon Marsh, birds, black-bellied plover = Pluvialis squatarola, Columbia River estuary, Coos Bay, dowitchers = Limnodromus spp., Dunlin = Calidris alpina, Greater yellowlegs = Tringa melanoleuca, Nestucca Bay, Netarts Bay, New River Estuary, Siletz Bay, Siuslaw River estuary, temporal abundance, temporal distribution, Tillamook Bay, Umpqua River estuary, western sandpiper = Calidris mauri, Yaquina Bay}, url = {https://www.arlis.org/docs/vol1/J/41812324.pdf}, author = {Page, Gary W. and Shuford, W. Davud and Kjelmyr, Janet E. and Stenzel, Lynne E.} } @book {32761, title = {White Sturgeon Management Framework Plan}, year = {1992}, month = {September_1992}, pages = {201 p.}, publisher = { Pacific States Marine Fisheries Commission}, organization = { Pacific States Marine Fisheries Commission}, address = {Portland, Or.}, keywords = {biological, commercial fisheries, geographical distribution, life history information, recreational fisheries, white sturgeon=Acipenser transmontanus, Yaquina River}, author = {White Sturgeon Planning Committee, and Hanson, David L. Hanson and Cochnauer, Tim G. and DeVore, John D. and Henry E. Jr Forner and Kisanuki, Tom T. and Kohlhorst, David W. and Lumley, Paul and McCabe, George, Jr. and Nigro,Anthony A. and Parker, Steve and Swartz, Don and VanVooren, Al} } @book {32366, title = {Species profiles: life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): coho salmon}, series = {Biological Report (Washington, D.C.)}, volume = {no.82-11.86}, year = {1989}, month = {1989}, pages = {21 p.}, publisher = {Coastal Ecology Group, Waterways Experiment Station, U.S. Army Corps of Engineers}, organization = {Coastal Ecology Group, Waterways Experiment Station, U.S. Army Corps of Engineers}, address = {Vicksburg, Miss.}, keywords = {cutthroat trout = Oncorhynchus clarki, geographic distribution, habitats, life history information, logging, Nehalem River, Nestucca River, taxonomy, Trask River, water quality, water temperature}, url = {https://webharvest.gov/peth04/20041023214018/http://www.nwrc.usgs.gov/wdb/pub/0176.pdf}, author = {Pauley, Gilbert B. and Oshima, Kevin and Bowers, Karen L. and Thomas, G. L.} } @book {83293, title = {Species profiles: life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): sea-run cutthroat trout}, series = {Biological Report (Washington, D.C.)}, volume = {no.82-11.86}, year = {1989}, month = {1989}, pages = {21 p.}, publisher = {Coastal Ecology Group, Waterways Experiment Station, U.S. Army Corps of Engineers}, organization = {Coastal Ecology Group, Waterways Experiment Station, U.S. Army Corps of Engineers}, address = {Vicksburg, Miss.}, keywords = {cutthroat trout = Oncorhynchus clarki, geographic distribution, habitats, life history information, logging, Nehalem River, Nestucca River, taxonomy, Trask River, water quality, water temperature}, url = {https://webharvest.gov/peth04/20041023214018/http://www.nwrc.usgs.gov/wdb/pub/0176.pdf}, author = {Pauley, Gilbert B. and Oshima, Kevin and Bowers, Karen L. and Thomas, G. L.} } @article {32321, title = {Wave Information Studies of US Coastlines. Pacific coast hindcast phase III north wave information}, volume = {no.17}, year = {1989}, month = {March_1989}, pages = {600 p.}, institution = {U.S. Army Corps of Engineers. Coastal Engineering Research Center}, address = {Vicksburg, MS}, keywords = {physical, wave height data}, author = {Jensen, R. E. and Hubertz, J. M. and Payne, Jane B. and U.S. Army. Corps of Engineers. Coastal Engineering Research Center,} } @article {32241, title = {Effects of mixtures of sediment contaminants on the marine infaunal amphipod, Rhepoxynius abronius}, journal = {Environmental Toxicology and Chemistry}, volume = {7}, number = {12}, year = {1988}, month = {1988}, pages = {1013-1020}, keywords = {amphipods, aquatic invertebrates, biological, chemical, crustaceans, fluoranthene, mercury, physiology, polychlorinated biphenyls, Rhepoxynius abronius, sediments, toxicity, Trace metals, Yaquina Bay, zinc}, author = {Swartz, Richard C. and Kemp. P.F. and Schults, D.W. and Lamberson, Janet O.} } @article {32001, title = {Pacific Coast Hindcast Phase II Wave Information}, year = {1987}, note = {Also called WIS Report 16.}, month = {May_1987}, pages = {413 p.}, institution = {U.S. Army Corps of Engineers. Coastal Engineering Research Center}, address = {Vicksburg, MS}, keywords = {physical, wave height data}, url = {https://apps.dtic.mil/sti/trecms/pdf/ADA182795.pdf}, author = {Corson, William D. and Abel, C. E. and Brooks, R. M. and Farrar, P. D. and Groves, B. J. and Payne, J. B. and McAneny, D. S. and Tracy, B. A. and U.S. Army. Corps of Engineers. Coastal Engineering Research Center,} } @article {31911, title = {Inter-laboratory comparison of a sediment toxicity test using the marine amphipod, Rhepoxynius abronius}, journal = {Marine Environmental Research}, volume = {19}, year = {1986}, month = {1986}, pages = {p.13-37}, keywords = {amphipods, aquatic invertebrates, bioassay, biological, cadmium data, crustaceans, Oregon State University Hatfield Marine Science Center, Rhepoxynius abronius, sediment data, toxicity, Yaquina Bay}, author = {Mearns, A.J and Swartz, Richard C. and Cummins, J.M. and Dinnel, P.A. and Plesha, P. and Chapman, P.M.} } @article {31896, title = {The role of estuarine and offshore nursery areas for young English sole, Parophrys vetulus Girard, of Oregon.}, journal = {Fishery Bulletin}, volume = {84}, number = {1}, year = {1986}, month = {1986}, pages = {p.119-132}, keywords = {abundance, biological, catch statistics, developmental stages, English sole=Pleuronectes vetulus, fishes, geographical distribution, physiology, population biology, size composition, temporal distribution, Yaquina Bay}, url = {https://spo.nmfs.noaa.gov/content/role-estuarine-and-offshore-nursery-areas-young-english-sole-parophrys-vetulus-girard}, author = {Krygier, Earl E. and Pearcy, William G.} } @book {24756, title = {Species profiles: life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): coho salmon}, series = {Biological Report (Washington, D.C.)}, volume = {no.82 (11.48)}, year = {1986}, note = {This is a classic overview of the biology and life history of coho salmon in the Pacific Northwest. Good bibliography, if dated.Map, charts, line drawings.}, month = {1986}, pages = {18 p.}, publisher = {U.S. Fish and Wildlife Service; U.S. Army Engineer Waterways Experiment Station}, organization = {U.S. Fish and Wildlife Service; U.S. Army Engineer Waterways Experiment Station}, address = {Washington, D.C.; Vicksburg, Miss.}, keywords = {Alsea River, Coho salmon = Oncorhynchus kisutch, Coquille River, geographic distribution, habitats, life history information, Nehalem River, Nestucca River, North Umpqua River, Rogue River, Siletz River, Siuslaw River, Smith River, South Umpqua River, taxonomy, Trask River, Umpqua River, water quality, water temperature}, url = {https://archive.org/details/DTIC_ADA172613}, author = {Laufle, Jeffrey C. and La Touche, Yves David. and Pauley, Gilbert B. and Shepard, Michael F. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and National Coastal Ecosystems Team (U.S.),} } @article {31941, title = {Species profiles : life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): Dungeness crab}, volume = {no. 82-11.63}, year = {1986}, note = {This is a classic overview of the biology and life history of the Dungeness crab in the Pacific Northwest. Good bibliography, if a bit dated.Map, charts, line drawings.}, pages = {20 p.}, keywords = {Alsea Bay, Chetco River estuary, Columbia River estuary, commercial fisheries - shellfish, Coos Bay, Coquille Bay, crustaceans, Dungeness crab = Metacarcinus magister (Cancer magister), fecundity, general, growth, life history information, Nehalem Bay, Nestucca Bay, Netarts Bay, recreational fisheries - shellfish, reproductive behavior, Rogue River estuary, Salmon River Estuary, Sand Lake, Siletz Bay, Siuslaw Bay, taxonomy, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://apps.dtic.mil/sti/pdfs/ADA181590.pdf}, author = {Pauley, Gilbert B. and Armstrong, David A. and Heun, Thomas W. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and U.S.National Wetlands Research Center} } @book {31781, title = {On the Yaquina and Big Elk: Elk City, Salado, Glen, Harlan, Burnt Woods, Eddyville, Chitwood Oregon}, year = {1985}, note = {excellent photographs}, month = {1985}, pages = {47 p.}, publisher = {Lincoln County Historical Society}, organization = {Lincoln County Historical Society}, address = {Newport, Or.}, keywords = {Burnt Woods, Chitwood, Eddyville, Elk City, general, Glen, Harlan, historical, Salado, Upper Yaquina River, Yaquina River, Yaquina River Basin}, author = {Parry, Evelyn P.} } @article {31666, title = {Chronic geologic hazard map of the South Beach area, coastal Lincoln County, Oregon}, volume = {no.O-94-27}, year = {1984}, note = {Open-file report O-94-27. Valuable information on erosion. {\textquotedblleft}Oregon Department of Geology and Mineral Industries Open-File Report 0-94-11 should be utilized with this map to provide detailed information on the hazard mapping techniques and appropriate use of the information.{\textquotedblright}}, month = {[1994]}, publisher = {Oregon Department of Geoglogy and Mineral Industries}, type = {Physical relief}, address = {Portland, Or.}, keywords = {bathymetry, coastal hazards, dredging, Main channel, map, physical, South Beach, west of Yaquina Bay Bridge, Yaquina Bay}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A73092}, author = {Priest, George R. and Oregon. Dept. of Geology and Mineral Industries,} } @article {31661, title = {The ecology of eelgrass meadows of the Pacific Northwest: A community profile}, volume = {no.84/24}, year = {1984}, note = {Table 2 shows the Yaquina River as having a "moderate to high percent of eelgrass." (p.7)}, pages = {85 p.}, institution = {United States Fish and Wildlife Service}, keywords = {aquatic vegetation, biological, community ecology, dredging, ecological values, eelgrass=Zostera japonica, eelgrass=Zostera marina, grasses, human impacts, life history information, natural resource management, Phyllospadix species, salinity, waste disposal, water pollution, water temperature}, url = {https://digitalmedia.fws.gov/digital/collection/document/id/1734/rec/2}, author = {Phillips, Ronald C. and National Coastal Ecosystems Team (U.S.), and United States. Army. Corps of Engineers,} } @proceedings {31626, title = {Landslide hazard rating for portions of the Oregon coast range}, year = {1984}, note = {Symposium was held 7-11 May, 1984.}, pages = {p.265-274}, address = {Honolulu, HI}, keywords = {coastal hazards, erosion, landslides, physical, sediments, Yaquina Bay, Yaquina River, Yaquina River Basin}, author = {Burroughs, E. R. Jr.}, editor = {O{\textquoteright}Loughlin, C. L. and Pearce, A.J.} } @article {31511, title = {Anomalous sea levels at Newport, Oregon , during the 1982-83 El Nino}, journal = {Coastal Oceanography and Climatology News}, volume = {5}, number = {4}, year = {1983}, month = {Summer_1983}, pages = {p.37-39}, keywords = {climate, coastal upwelling, El Nino, hydrology, physical, Yaquina Bay}, author = {Huyer, Adriana and Gilbert, William E. and Pittock, Henry L.} } @book {31541, title = {Pictorial Recollections of Toledo, Oregon}, year = {1983}, note = {photographs}, month = {1983}, pages = {50 p.}, publisher = {Lincoln County Historical Society}, organization = {Lincoln County Historical Society}, address = {Newport, Or.}, keywords = {general, historical, Lower Yaquina River, Toledo}, author = {Parry, Evelyn P.} } @book {31446, title = {Species Profiles : Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Pacific Northwest) : Chinook Salmon}, series = {FWS/OBS}, volume = {no.82 (11.6)}, year = {1983}, note = {Good bibliography.}, month = {1983}, pages = {16 p.}, publisher = {U.S. Dept. of the Interior, U.S. Fish and Wildlife Service}, organization = {U.S. Dept. of the Interior, U.S. Fish and Wildlife Service}, address = {Washington, D.C.}, keywords = {Chinook salmon = Oncorhynchus tshawytscha, Coos River, Coquille River, geographic distribution, habitats, life history information, Rogue River, Siletz River, Siuslaw River, taxonomy, turbidity, Umpqua River, water quality, water temperature, Yaquina River}, url = {https://apps.dtic.mil/sti/pdfs/ADA147263.pdf}, author = {Beauchamp, David A. and Shepard, Michael F. and Pauley, Gilbert B. and U.S. Fish and Wildlife Service. Division of Biological Services, and National Coastal Ecosystems Team (U.S.), and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group,} } @article {31386, title = {Observations of sea level, wind and atmospheric pressure at Newport, Oregon, 1967-1980}, volume = {no.98}, year = {1982}, note = {National Science Foundation OCE-7925019. Publication is also part of the series Reference (Oregon State University. School of Oceanography): no. 82-12.}, month = {December_1982}, institution = {Oregon State University}, address = {Corvallis, Or.}, keywords = {climate, coastal upwelling, hydrology, Oregon State University Hatfield Marine Science Center, physical, South Jetty, statistical analysis, wind data, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/sq87bv73f}, author = {Pittock, Henry L. and Gilbert, William E. and Huyer, Adriana and Smith, Robert L.} } @mastersthesis {31001, title = {Decomposition of Organic Matter in Estuarine Sediments by Sulfate Reduction: a Field Study from Yaquina Bay and Sediment Incubation Experiments}, year = {1980}, note = {Major professors were Dr. E. Suess and Dr. R. Y. Morita. }, month = {May_1980}, pages = {173 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {School of Oceanography}, address = {Corvallis, Or.}, keywords = {biodegradation, biological, chemical, Sally{\textquoteright}s Bend, Sally{\textquoteright}s Slough, sediments, sulphate, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/dn39x461g}, author = {Powell, Sara H.} } @article {31006, title = {An Ecological Characterization of the Pacific Northwest Coastal Region. Volume 4: Characterization Atlas - Watershed Unit Descriptions}, volume = {no.79/14}, year = {1980}, month = {July_1980}, pages = {620 p.}, institution = {United States Fish and Wildlife Service. Biological Services Program}, keywords = {Alsea River estuary, demographics, depleted populations, economics, estuarine dynamics, fishes, general ecosystem description, hydrology, McCaffery Slough, methodology, Pacific salmonids=Oncorhynchus species, physical, Pooles Slough, precipitation, Salmon River estuary, Siletz River estuary, Siuslaw River estuary, water quality, Yaquina Bay, Yaquina River Basin}, url = {https://babel.hathitrust.org/cgi/pt?id=mdp.39015086411835;view=1up;seq=3}, author = {Proctor, Charles M. and Garcia, John C. and Galvin, David V. and Lewis, Gary B. and Loehr, Lincoln C. and Massa, Alison M. and Ryckman Edgerly Tomlinson \& Associates Inc} } @article {30491, title = {Final Report on Port of Newport: Facilities Maintenance and Development Program}, year = {1978}, month = {February_1978}, institution = {Department of Industrial and General Engineering, Oregon State University}, address = {Corvallis, Or.}, keywords = {general, industrial development, physical modifications, Yaquina Bay}, author = {Cowgill, Robert L. and Isett, David E. and Port of Newport. Morrage Advisory Committee,} } @mastersthesis {30391, title = {The Effects of PCB Exposure on the Behavior of the Shore Crab Hemigrapsus oregonensis}, year = {1977}, note = {Studied changes in behavior in yellow shore crabs caused by exposure to polychlorinated biphenyls (PCBs). "The Yaquina Bay crab population differs from both California and Washington populations by not being totally synchronized in reproduction as evidenced by the occurrence of brooding females in Yaquina Bay throughout the year (Batie, 1974)." (p.8) Includes b+w photographs showing some behaviors. Major professor was Dr. Robert L. Horton. }, month = {June_1977}, pages = {104 p,}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {School of Oceanography}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, crustaceans, decapods, feeding behavior, Hatfield Marine Science Center, physiology, polychlorinated biphenyls, population biology, theses, toxicity, Yaquina Bay, yellow shore crab=Hemigrapsus oregonensis}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/1z40kx325}, author = {Pearson, Walter H.} } @inbook {30396, title = {The macrophytic marine algae of Oregon}, booktitle = {The Marine Plant Biomass of the Pacific Northwest Coast}, year = {1977}, month = {1977}, pages = {p.93-115}, publisher = {Oregon State University Press}, organization = {Oregon State University Press}, address = {Corvallis, Or.}, keywords = {algae, biological}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/5999n4177}, author = {Phinney, Harry K.}, editor = {Krauss, Robert W. (ed.)} } @article {30351, title = {Neoplastic disease in bivalve mollusks from Oregon estuaries with emphasis on research on proliferative disorders in Yaquina Bay oysters}, journal = {Annals of the New York Academy of Sciences}, volume = {298}, year = {1977}, month = {September_1977}, pages = {356-373}, keywords = {Alsea River estuary, aquatic invertebrates, biological, bivalves, blue mussel=Mytilus edulis, Idaho Point, molluscs, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Oregon State University Hatfield Marine Science Center, Oysterville, physiology, Sawyer{\textquoteright}s Landing, shellfish disease, The Bend, Tillamook estuary, Winant, Yaquina Bay}, author = {Mix, Michael C. and Pribble, H. James and Riley, Ronald T. and Tomasovic, Stephen P.} } @article {30066, title = {Infection of the heart cockle, Clinocardium nuttallii, from Yaquina Bay, Oregon, with an endosymbiotic alga}, journal = {Journal of Invertebrate Pathology}, volume = {28}, number = {3}, year = {1976}, note = { Is it symbiosis or parasitism? "The thick layers surrounding the algal cells in situ, the dense colonies, and the in vitro reaction to host extract suggest the alga is parasitic. However, the presence of chloroplasts, the location of the algal cells only in illuminated tissue, the seemingly unhampered reproduction in situ, and the eventual adaptation to mineral medium suggest the alga is a facultative parasite." (from the Abstract)}, pages = {p.291-299}, keywords = {algae, aquatic invertebrates, bivalves, Cockle clam = Clinocardium nuttallii, mollusks, parasites, Symbiosis, Yaquina Bay}, author = {Hartman, M. C. and Pratt, I.} } @inbook {30141, title = {PCB and the activities budget of the crab Hemigrapsus oregonensis}, booktitle = {Estuarine Processes: Uses, Stresses, and Adaptations to the Estuary}, volume = {1}, year = {1976}, month = {1976}, pages = {p.290-301}, publisher = {Academic Press}, organization = {Academic Press}, keywords = {aquatic invertebrates, bioassay, biological, chemical, crustaceans, decapods, feeding behavior, physiology, polychlorinated biphenyls, reproductive behavior, water pollution, Yaquina Bay, yellow shore crab=Hemigrapsus oregonensis}, author = {Pearson, Walter H. and Holton, Robert L.}, editor = {Wiley, Martin (ed.)} } @article {36641, title = {Pleasure boating in Oregon : a report to the Oregon State Marine Board}, volume = {no.42}, year = {1976}, note = {This report summarizes the status of recreational boating in Oregon circa 1975. The Willamette and Columbia Rivers were the most heavily used waterways in the state. Most pleasure boats were used for recreational fishing, with waterskiing and cruising as other major activities. The size of pleasure boats was increasing. Problems included overcrowding at boating facilities, a lack of law enforcement, and a need for more public restrooms.}, pages = {73 p.}, institution = {Oregon State University. Water Resources Research Institute}, address = {Corvallis, Or.}, keywords = {Alsea River, Devils Lake, Diamond Lake, recreational fisheries, Siletz River, Siuslaw River, tourism, Umpqua River, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/defaults/76537521k}, author = {Pfister, Robert E. and Donheffner, Paul E. and Hartsook, Thomas Edward and Oregon. State Marine Board} } @mastersthesis {29741, title = {Factors That Influence Sulfide Production in an Estuarine Environment}, year = {1974}, note = {Major professor was Dr. Arthur Anderson. Masters thesis.}, pages = {97 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Microbiology}, address = {Corvallis, Or.}, keywords = {bacteria, carbon, chemical, Coos Bay, dissolved oxygen, estuarine dynamics, hydrology, sediments, sulphate, sulphide, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/2b88qg89m}, author = {Peterson, Paul E.} } @article {29736, title = {Larval fishes of Yaquina Bay, Oregon: a nursery ground for marine fishes?}, journal = {Fishery Bulletin}, volume = {72}, number = {1}, year = {1974}, month = {1974}, pages = {p.201-213}, keywords = {abundance, bay goby=Lepidogobius lepidus, biological, Buoy 15, Buoy 21, Buoy 29, Buoy 39, community ecology, developmental stages, fishes, geographical distribution, Lower Yaquina River, Pacific herring=Clupea pallasi, Pacific staghorn sculpin=Leptocottus armatus, prickly sculpin=Cottus asper, reproductive behavior, species composition, surf smelt=Hypomesus pretiosus, temporal distribution, Yaquina Bay, Yaquina Bay Bridge}, url = {https://fisherybulletin.nmfs.noaa.gov/content/larval-fishes-yaquina-bay-oregon-nursery-ground-marine-fishes}, author = {Pearcy, William G. and Myers, Sharon S.} } @article {29511, title = {Descriptions and information sources for Oregon estuaries}, volume = {no.19}, year = {1973}, note = {Still valuable.}, month = {March_1973}, institution = {Water Resources Research Institute, Oregon State University}, address = {Corvallis, Or.}, keywords = {Alsea River estuary, commercial fisheries, Coos River estuary, Coquille River estuary, general ecosystem description, human impacts, hydrology, land use, Nehalem River estuary, Nestucca River estuary, Netarts estuary, physical, physical modifications, recreational fisheries, salinity, Salmon River estuary, Sand Lake Estuary, sediments, Siletz River estuary, Siuslaw River estuary, Tillamook estuary, Umpqua River estuary, water quality, water temperature, water use, Yaquina Bay, Yaquina River Basin}, url = {https://ir.library.oregonstate.edu/concern/defaults/cj82kc411}, author = {Percy, Katherine L. and Oregon State University. Sea Grant College Program, and United States. Office of Water Resources Research,} } @article {29496, title = {Parasites as indicators of English sole (Parophrys velutus) nursery grounds}, journal = {Transactions of the American Fisheries Society}, volume = {102}, number = {2}, year = {1973}, month = {April_1973}, pages = {p.405-411}, keywords = {biological, Buoy 15, Buoy 29, Buoy 39, developmental stages, English sole=Pleuronectes vetulus, fish disease, fishes, Lower Yaquina River, parasites, population biology, reproductive behavior, size composition, Yaquina Bay}, author = {Olson, Robert E. and Pratt, Ivan} } @article {29216, title = {The biochemical analysis of some estuarine phytoplankton species. I. Fatty acid composition}, journal = {Journal of Phycology}, volume = {8}, number = {3}, year = {1972}, month = {1972}, pages = {p.211-216}, keywords = {aquatic vegetation, biological, chemical, physiology, phytoplankton, Yaquina Bay}, author = {DeMort, Carole L. and Lowry, Robert and Tinsley, Ian and Phinney, Harry K.} } @mastersthesis {29296, title = {A Description of Hydrography, Winds, and Currents During the Upwelling Season Near Newport, Oregon}, year = {1972}, note = {"Several series of measurements of the hydrography, currents, and winds during the past ten years are used as a basis for an overview of the physical oceanography and meteorology during the upwelling season near Newport, Oregon. . . The resulting description strengthens and extends the conceptual model of coastal upwelling." (from the Abstract). Major professor was Dr. Stephen Pond. Doctoral dissertation.}, month = {June_1972}, pages = {163 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Oceanography}, address = {Corvallis, Or.}, keywords = {climate, coastal upwelling, hydrology, Oregon State University Hatfield Marine Science Center, physical, salinity data, theses, tidal currents, water temperature data, wind data, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/9593tx320}, author = {Pillsbury, Ronald D.} } @article {29311, title = {The distribution of intertidal phytopsammon in an Oregon estuary}, journal = {Marine Biology}, volume = {13}, number = {4}, year = {1972}, month = {April_1972}, pages = {p.318-324}, keywords = {abundance, aquatic vegetation, biological, diatoms, estuarine dynamics, geographical distribution, hydrology, Idaho Flats, light, Sally{\textquoteright}s Bend, sediments, temporal distribution, vertical distribution, Yaquina Bay, zonal distribution}, author = {Riznyk, Raymond Z. and Phinney, Harry K.} } @article {29196, title = {Effects of tidal flats on estuarine water quality}, journal = {Journal of Water Pollution Control Federation}, volume = {44}, number = {1}, year = {1972}, month = {1972}, pages = {p.541-556}, keywords = {Butler Bridge, chemical, dissolved oxygen data, estuarine dynamics, Idaho Flats, Parker Slough, physical, pulp mill effluent, sediments, sulpher cycle, sulphide data, water pollution, water quality, Yaquina Bay}, author = {Bella, David A. and Ramm, Alan E. and Peterson, Paul E.} } @article {29206, title = {Ingestion of bivalve molluscan larvae by the polychaete annelid Polydora ligni}, journal = {The Veliger}, volume = {14}, number = {3}, year = {1972}, note = {Good photography of Polydora ligni}, month = {January 1_1972}, pages = {p.274-275}, keywords = {annelids, biological, Japanese littleneck=Tapes phillippinarum, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas, polychaete worms}, author = {Breese, Wilbur P. and Phibbs, F. Duane} } @proceedings {29356, title = {Multi-disciplinary study of water quality relationships: A case study of Yaquina Bay, Oregon}, volume = {no.348}, year = {1972}, note = {ill., maps ; 28 cm. Introduction -- The demand for sport fishing at Yaquina Bay -- The impact of sport angling on the Yaquina Bay economy -- Alternative waste disposal methods -- The predicted influence of kraft mill effluent on the fisheries resources -- An economic evaluation of alternative levels of water quality -- Institutional considerations -- Resource management decisions -- Appendix I. Index estimation of angler effort -- Appendix II. Consumer{\textquoteright}s surplus as a measure of direct benefits -- Appendix III. Field survey questionnaire on yield and expenditures.}, pages = {135 p.}, publisher = {Oregon State University Agricultural Experiment Station}, address = {Corvallis, Or.}, keywords = {bioassay, chemical, commercial fisheries, ecological values, economics, ecosystem modeling, environmental policy and law, general, general ecosystem description, Grassy Point, industrial development, land use, natural resource management, outfall, pulp mill effluent, recreational fisheries, sulphate, toxicity, urban development, waste disposal, water pollution, water quality, water rights, water use, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/1g05fg61j}, author = {Stoevener, Herbert H. and Stevens, Joseph B. and Horton, Howard F. and Sokoloski, Adam and Parrish, Loys P. and Castle, Emery N.} } @article {29106, title = {The life cycle and larval development of Echinorhynchus lageniformis ekbaum, 1938 (Acanthocephala: Echinorhynchidae)}, journal = {Journal of Parasitology}, volume = {57}, number = {1}, year = {1971}, month = {1938}, pages = {p.143-149}, keywords = {acanthocephalans, amphipods, aquatic invertebrates, biological, Corophium species, crustaceans, developmental stages, Echinorhynchus species, feeding behavior, fish disease, life history information, Oregon State University Hatfield Marine Science Center, parasites, physiology, population biology, starry flounder=Platichthys stellatus, water temperature, Yaquina Bay}, author = {Olson, Robert E. and Pratt, Ivan} } @article {29116, title = {Toxicity of kraft mill effluent to selected organisms from Yaquina Bay, Oregon}, journal = {Northwest Science}, volume = {45}, number = {4}, year = {1971}, month = {1971}, pages = {p.244-251}, keywords = {bioassay, biological, chemical, dungeness crab=Metacarcinus magister (Cancer magister), English sole=Pleuronectes vetulus, kelp greenling=Hexagrammos decagrammus, Oregon State University Hatfield Marine Science Center, pile perch=Rhacochilus vacca, pulp mill effluent, starry flounder=Platichthys stellatus, striped seaperch=Embiotoca lateralis, sulphate, toxicity, walleye surfperch=Hyperprosopon argenteum, water pollution, white seaperch=Phanerodon furcatus, Yaquina Bay}, author = {Parrish, Loys P. and Horton, Howard F.} } @article {17296, title = {Crisis in Oregon estuaries}, volume = {no.4}, year = {1970}, institution = {Oregon State University Sea Grant Marine Adviosry Program}, address = {Corvallis, Or.}, keywords = {Alsea River estuary, Coos River estuary, general, Nehalem River estuary, Nestucca River estuary, Netarts estuary, Port Orford, Rogue River estuary, Salmon River Estuary, Siletz River estuary, Siuslaw River estuary, Tillamook estuary, Umpqua River estuary, water pollution, water quality, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/4m90dw054}, author = {Wick, William Q. and Oregon State University. Marine Advisory Program} } @article {28966, title = {Laboratory Rearing and Hatching of Pacific Coast Clams and Oysters. Annual Report July 1, 1969-June 30, 1970}, year = {1970}, note = {"During the 1969-70 project year emphasis was placed on spawning and rearing clams which had not been previously spawned successfully. Salinity-temperature tolerances were determined for the laboratory-reared clam larvae. Field studies comparing growth of laboratory-reared and imported Pacific and Kumamoto oysters were continued. In addition, studies comparing various methods of oyster culture were initiated and winter survival of laboratory-reared oyster spat was studied. Laboratory-reared butter clams planted in Yaguina and Netarts bays were monitored for growth and survival. A plot of Manila littleneck clams was also established in Yaquina Bay." (Introduction) Document does not indicate which Yaquina Bay laboratory was used.}, month = {August_1970}, pages = {16 p.}, institution = {U.S. Department of the Interior. Fish and Wildlife Service}, keywords = {algal species, aquaculture, aquatic invertebrates, aquatic vegetation, biological, bivalves, Butter clam = Saxidomus giganteus, Cockle clam = Clinocardium nuttallii, developmental stages, gaper clam =Tresus capax, growth, Isochrysis species, Kumamoto oyster = Crassostrea sikamea, life history information, Littleneck clam = Leukoma staminea, molluscs, Monochrysis species, Netarts estuary, Pacific oyster = Crassostrea gigas, physiology, razor clam = Siliqua patula, reproductive behavior, salinity, Softshell clam = Mya arenaria, Venus clam = Venerupis phillipinarum, water temperature, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/5t34sk315}, author = {Phibbs, Duane and Oregon. Fish Commission} } @article {28846, title = {Shellfish investigations. Progress report $\#$39. April 1, 1967 - March 31, 1970}, volume = {no.39}, year = {1970}, note = {This document is a report on shellfish investigations from April 1967 to March 1970. It includes the results of bay clam surveys for Yaquina, Siuslaw, and Umpqua bays, and harvest numbers for razor clams in both personal-use and commercial fisheries. This report also contains a summary of beach surveys for six razor clam beaches, and the results of two new methods of ragging razor clams. In crab work, the report discusses problems with tagging, condition sampling, and regulatory issues. The report discusses rearing of red abalone, federal programs for oysters, and concludes with a summary of work with intertidal nonfood animals.}, month = {October_1970}, pages = {30 p.}, institution = {[Fish Commission of Oregon]}, keywords = {abundance, age composition, Alsea River estuary, aquaculture, aquatic invertebrates, biological, bivalves, breakwater, commercial fisheries - shellfish, Coos River estuary, crustaceans, decapods, fat gaper=Tresus capax, growth, Idaho Point, kumamoto oyster=Crassostrea sikamea, methodology, molluscs, Netarts estuary, Nuttall cockle=Clinocardium nuttallii, Oregon Fish Commission Research Laboratory, Pacific oyster=Crassostrea gigas, population biology, recreational fisheries - shellfish, Sally{\textquoteright}s Bend, Siuslaw River estuary, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/8p58pd77t}, author = {Snow, C. Dale and Gaumer, Tom and Demory, Darrel and Neilsen, John R. and Osis, Laimons and Phibbs, Duane and Gibson, Gary} } @conference {28826, title = {Some observations on the spawning and early development of the butter calm, Saxidomus giganteus (Deshayes)}, booktitle = {1969 National Shellfisheries Association Proceedings}, volume = {60}, year = {1970}, month = {June_1970}, pages = {p.95-98}, publisher = {National Shellfisheries Association}, organization = {National Shellfisheries Association}, keywords = {biological, butter clam=Saxidomus giganteus, life history information, Oregon State University Hatfield Marine Science Center}, author = {Breese, Wilbur P. and Phibbs, F. Duane} } @book {83273, title = {Climatological Handbook, Columbia Basin States}, year = {1969}, note = {Historic meteorological data. v.1. Temperature; v.2. Precipitation; v.3. Hourly data; v.4. Canadian data; v.5. Lower atmosphere RAOB data}, address = {[Vancouver, Wash.]}, keywords = {climate, Pacific Northwest, precipitation data, temperature data} } @article {28746, title = {Laboratory Rearing and Hatching of Pacific Coast Clams and Oysters. Quarterly Report October 1, 1968 - December 31, 1968}, year = {1969}, note = {Document does not indicate which Yaquina Bay laboratory was used.}, month = {January_1969}, institution = {U.S. Department of the Interior. Fish and Wildlife Service}, keywords = {algal species, aquaculture, aquatic invertebrates, aquatic vegetation, biological, bivalves, butter clam=Saxidomus giganteus, developmental stages, fat gaper=Tresus capax, growth, Isochrysis species, kumamoto oyster=Crassostrea sikamea, life history information, molluscs, Monochrysis species, Netarts estuary, Nuttall cockle=Clinocardium nuttallii, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Pacific oyster=Crassostrea gigas, Pacific razor=Siliqua patula, physiology, reproductive behavior, salinity, water temperature, Yaquina Bay}, author = {Phibbs, Duane and Oregon. Fish Commission} } @article {28751, title = {Laboratory Rearing and Hatching of Pacific Coast Clams and Oysters. Annual Report July 1, 1968 - June 30, 1969}, year = {1969}, note = {"The first year of the project was devoted to developing laboratory spawning and larval rearing techniques for Pacific Coast clams and oysters. The objectives of the past year were to: (1) refine these spawning and rearing techniques to achieve higher larval survival to the adult form and (2) initiate growth and survival studies in the field using laboratory-raised juvenile clams and oysters." (from the Introduction)}, pages = {15 p.}, institution = {U.S. Department of the Interior. Fish and Wildlife Service}, keywords = {algal species, aquaculture, aquatic invertebrates, aquatic vegetation, biological, bivalves, Butter clam = Saxidomus giganteus, Cockle clam = Clinocardium nuttallii, Coos River estuary, developmental stages, edible oyster=Ostrea edulis, Gaper clam = Tresus capax, growth, Isochrysis species, Kumamoto oyster = Crassostrea sikamea, life history information, littleneck clam = Leukoma staminea, molluscs, Monochrysis species, Netarts estuary, Pacific oyster=Crassostrea gigas, physiology, razor clam = Siliqua patula, reproductive behavior, salinity, water temperature, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/x059c808f}, author = {Phibbs, Duane and Oregon. Fish Commission} } @article {28756, title = {Larval rearing of bivalve mollusks}, journal = {Proceedings - National Shellfisheries Association}, volume = {59}, year = {1969}, month = {1969}, pages = {p.12}, keywords = {biological, butter clam=Saxidomus giganteus, edible oyster=Ostrea edulis, fat gaper=Tresus capax, kumamoto oyster=Crassostrea sikamea, Nuttall cockle=Clinocardium nuttallii, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas, Pacific razor=Siliqua patula}, author = {Phibbs, F. Duane} } @article {51356, title = {Respiratory adaptations of two burrowing crustaceans, Callianassa californiensis and Upogebia pugettensis (Decapoda, Thalassinidea)}, journal = {Biological Bulletin}, volume = {136}, year = {1969}, note = {Ghost shrimp and mud shrimp taken from Yaquina Bay were studied. Both species have low metabolic rates and {\textquotedblleft}are remarkably tolerant to anoxic conditions.{\textquotedblright} (p.283) This may have implications for global warming and an expected higher frequency of anoxic events.}, month = {1969, Apr.}, pages = {p.274-287}, keywords = {Coquille Point, Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), Mud shrimp = Upogebia pugettensis, oxygen, physiology, respiration, Yaquina Bay}, author = {Thompson, Rogene Kasparek and Pritchard, Austin W.} } @inbook {23756, title = {Table 11-32. Rain storms: Outstanding occurrences of record: Oregon}, booktitle = {Climatological Handbook, Columbia Basin States}, volume = {2}, year = {1969}, note = {Summarizes major rain events in Oregon from December, 1882 through December, 1964. A valuable compilation.}, pages = {p.253}, address = {[Vancouver, Wash.]}, keywords = {climate, flooding, Pacific Northwest, precipitation data} } @article {28611, title = {Laboratory Rearing and Hatching of Pacific Coast Clams and Oysters. Annual Report July 1, 1967 - June 30, 1968}, year = {1968}, note = {"The Pacific Coast oyster industry is dependent upon imported oyster seed from Japan. Inconsistent quantity and quality of the imported seed is limiting growth and expansion of the oyster industry while the demand for marketable oysters is increasing. The development of oyster hatcheries on the Pacific Coast could provide the oyster industry with a continuous supply of seed needed for increased production. Controlled hatchery conditions would also provide better quality oyster seed production through selective breeding. The main objectives of the first year were to develop spawning and setting techniques for Pacific Coast molluscs." (from the Introduction) November, 1968. Document does not indicate which Yaquina Bay laboratory was used.}, pages = {15 p.}, institution = {U.S. Department of the Interior. Fish and Wildlife Service}, keywords = {algal species, aquaculture, aquatic invertebrates, aquatic vegetation, biological, bivalves, Butter clam = Saxidomus giganteus, Cockle clam = Clinocardium nuttallii, developmental stages, edible oyster=Ostrea edulis, Gaper clam = Tresus capax, growth, Isochrysis species, Kumamoto oyster = Crassostrea sikamea, life history information, littleneck clam = Leukoma staminea, molluscs, Monochrysis species, Pacific oyster=Crassostrea gigas, physiology, razor clam = Siliqua patula, reproductive behavior, salinity, water temperature, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/5425kb477}, author = {Phibbs, Duane and Oregon. Fish Commission} } @book {28606, title = {River Mile Index, Coastal Tributaries, Oregon}, year = {1968}, note = {Maps.}, month = {1968}, pages = {84 p.}, publisher = {The Committee}, organization = {The Committee}, address = {Vancouver, WA [?]}, keywords = {geography, hydrography, hydrology, map}, author = {Pacific Northwest River Basins Commission. Hydrology and Hydraulics Committee,} } @article {28616, title = {Yaquina Bay Bridge, Newport, Oregon [archival photograph]}, year = {1968}, note = {Photograph shows the roadway at entrance to Yaquina Bay Bridge, a multi-span arch bridge, in Newport, Oregon.}, type = {graphic}, keywords = {Bridges Oregon Newport 1960-1970. Gelatin silver prints 1960-1970.}, url = {https://loc.gov/pictures/resource/ppmsca.09503/}, author = {Plowden, David and McCullough, Conde B.} } @article {28481, title = {A Proposal for the Yaquina Clean River Association}, year = {1967}, note = {[February] 1967.}, address = {Newport, Or.}, keywords = {general, water quality, Yaquina River}, author = {Newport. Chamber of Commerce, and Phillips, Ron} } @article {28501, title = {Proposed Modification of the Yaquina River for Navigational Channel from Deep Water in Yaquina Bay to River Mile 14 in the Vicinity of Toledo, Oregon}, year = {1967}, note = {"Public hearing, Toledo City Hall, Toledo, Oregon, April 20, 1967.""A presentation to the U.S. Army Engineer District, Portland, Corps of Engineers." Charts. Includes statistics of river-based economic activity in Toledo, i.e., board feet of lumber shipped, wood chips shipped, etc. from 1957 to 1966.}, pages = {48 p.}, institution = {Port of Toledo}, address = {Toledo, Or. }, keywords = {commercial fisheries, dredging, industrial development, logging, navigation, Port of Toledo, Toledo, Yaquina River}, author = {Port of Toledo (Or.),} } @mastersthesis {28496, title = {Sea Level, Winds, and Upwelling along the Oregon Coast}, year = {1967}, note = {Major professors were Dr. Robert Smith and Dr. June Pattullo. Master{\textquoteright}s thesis.}, month = {June_1967}, pages = {71 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Oceanography}, address = {Corvallis, Or.}, keywords = {climate, coastal upwelling, hydrology, physical, precipitation, statistical analysis, theses, wind, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/p2676x99p}, author = {Panshin, Daniel A.} } @article {28391, title = {An investigation of the early stage of upwelling along the Oregon Coast}, journal = {Journal of Geophysical Research}, volume = {71}, year = {1966}, month = {1966}, pages = {p.1135-1140}, keywords = {climate, coastal upwelling, hydrology, physical}, author = {Smith, Robert L. and Pattullo, June G. and Lane, Robert K.} } @mastersthesis {28271, title = {The Predicted Influence of Kaft Mill Effluent on the Distribution of Some Sport Fishes in Yaquina Bay, Oregon}, year = {1965}, note = {Major professor was Howard Horton. Masters thesis.}, month = {August_1965}, pages = {88 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fisheries and Wildlife, Fisheries}, address = {Corvallis, Or.}, keywords = {bioassay, biological, chemical, geographical distribution, pulp mill effluent, recreational fisheries, sulphate, theses, toxicity, water pollution, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/cf95jf90h}, author = {Parrish, Loys Phillip} } @article {28276, title = {Processes affecting seawater characteristics along the Oregon coast}, journal = {Limnology and Oceanography}, volume = {10}, number = {3}, year = {1965}, month = {July_1965}, pages = {p.443-450}, keywords = {climate, coastal upwelling, estuarine dynamics, hydrology, physical, precipitation, salinity, water temperature, Yaquina Bay}, author = {Pattullo, June and Denner, Warren} } @article {27971, title = {Lincoln District}, journal = {Oregon State Game Commission, Fishery Division. Annual Report - Fishery Division}, year = {1958}, note = {Numerous statistics, from creel censuses to spawning counts to catch-and-effort statistics. Includes data from Siltcoos and Tahkenitch Lakes. "The prevention of pollution of Yaquina River and Bay by a pulp mill was achieved only after considerable effort by the Sanitary Authority and Fish and Game Commissions. The company was ordered to live up to its agreement to transport wastes to the Pacific Ocean. The aquatic resources of Yaquina Bay were saved, at least for the time being." (p.242)}, pages = {p.228-244}, keywords = {Alsea River, Big Elk Creek, catch statistics, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, commercial fisheries, cutthroat trout = Oncorhynchus clarki, Depoe Bay, Devils Lake, Drift Creek, Five Rivers, hatcheries, introduced species, Lobster Creek, North Fork Alsea River, population count, recreational fisheries, salmonid species, Siletz River, Siltcoos Lake, Siuslaw River, South Fork Alsea River, steelhead trout = Oncorhynchus mykiss, Tahkenitch Lake, Yachats River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/12579x43k }, author = {Phillips, Robert W.} } @article {27941, title = {Lincoln District}, journal = {Oregon State Game Commission, Fishery Division. Annual Report - Fishery Division}, year = {1957}, note = {Numerous statistics, from creel censuses to spawning counts to catch-and-effort statistics. Includes data from Siltcoos and Tahkenitch Lakes. Table 191 (p.224) gives pollution and barriers to streams in the District in 1957.}, pages = {p.211-224}, keywords = {Alsea River, Big Elk Creek, catch statistics, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, commercial fisheries, cutthroat trout = Oncorhynchus clarki, Depoe Bay, Devils Lake, Drift Creek, Fall Creek, Five Rivers, hatcheries, human impacts, introduced species, Lobster Creek, logging, North Fork Alsea River, population count, recreational fisheries, salmonid species, Schooner Creek, Siletz River, Siuslaw River, South Fork Alsea River, steelhead trout = Oncorhynchus mykiss, water pollution, Yachats River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/05741x26h}, author = {Phillips, Robert W.} } @article {27871, title = {Estuarine circulation patterns}, journal = {Proceedings of the American Society of Civil Engineers}, volume = {81}, number = {717}, year = {1955}, month = {June_1955}, pages = {p.1-11}, keywords = {estuarine dynamics, hydrology, physical}, author = {Pritchard, D.W.} } @article {27796, title = {Investigation of proposed work project by the Yaquina Dock and Dredge Co. in Yaquina Bay near Newport, Oregon}, volume = {no.25}, year = {1953}, note = {Yaquina Dock and Dredge Company had applied for a permit to construct a dike, bulkheads, a groin and to dredge at Sally{\textquoteright}s Bend in Yaquina Bay. The Fish Commission investigated to ascertain the effects of the work on natural resources. Includes a public notice from the Army Corps of Engineers.}, pages = {3 p.}, keywords = {bivalves, Cockle clam = Clinocardium nuttallii, dredging, Gaper clam = Tresus capax, habitats, Littleneck clam = Leukoma staminea, molluscs, recreational fisheries - shellfish, Sally{\textquoteright}s Bend, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/w0892b88h}, author = {Marriage, Lowell D. and Oregon. Fish Commission. Shellfish Program} } @mastersthesis {27811, title = {Rearing of the Native Oyster Larvae, Ostrea lurida Carp., in Wooden and Concrete Tanks under Controlled Conditions}, year = {1953}, note = {Major professor was Roland E. Dimick. Masters thesis. Recounts early (1952-1953) experiments in rearing native oysters in Yaquina Bay.}, month = {June_1953}, pages = {74 p.}, school = {Oregon State College}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fish and Game Management}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, biological, bivalves, edible oyster=Ostrea edulis, introduced species, life history information, molluscs, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Oysterville, Pacific oyster=Crassostrea gigas, physiology, theses, Yaquina Bay, Yaquina Bay Fisheries Laboratory}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/d504rn949}, author = {Pasquale, Nicholas} } @article {27771, title = {Investigation of fish stoppage due to log jams in the Yaquina River and Elk River, August 12, 1952}, volume = {no.19}, year = {1952}, note = {"A survey was made on this date for the purpose of ascertaining whether or not log jams in the Elk City region of the Yaquina River and Elk River (Yaquina River tributary) were a serious menace to the passage of salmon." (p.1) }, pages = {3 p.}, keywords = {Abbey Creek, Elk City, Elk River, logging, navigation, salmonids, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/12579s91d}, author = {Marriage, Lowell D. and Waldron, Kenneth D. and Oregon. Fish Commission. Shellfish Program} } @article {27776, title = {Report of dam at Chitwood mill on Haxel Creek, a tributary of Thornton Creek}, volume = {no.22}, year = {1952}, note = {Describes an investigation of a dam at a millpond near the village of Chitwood, Oregon. The dam was on Haxel Creek, a tributary of Thornton Creek, a tributary of the Yaquina River. Includes a hand-drawn map of the area.}, pages = {3 p.}, institution = {Fish Commission of Oregon, Shellfish Program}, keywords = {Chitwood, dams, fish, Haxel Creek, logging, salmonid species, Thornton Creek, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/z603qx87v}, author = {Waldron, Kenneth D. and Oregon. Fish Commission. Shellfish Program} } @article {27721, title = {Investigation of proposed dredging operations in Yaquina Bay near the ship turning basin}, volume = {no.16}, year = {1951}, note = {Gives an Oregon Fish Commission shellfish biologist{\textquoteright}s response to a request by the C.D. Johnson Lumber Company to dredge in Yaquina Bay. Hand-drawn map shows the proposed location for disposal of dredging spoils. Includes the public notice issued by the Army Corps of Engineers.}, pages = {3 p.}, keywords = {C. D. Johnson Lumber Company, dredging, logging, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/cv43nx61h}, author = {Marriage, Lowell D. and Oregon. Fish Commission. Shellfish Program} } @article {27716, title = {Investigation on proposed log dump, log storage and raft moorage in King Slough of Yaquina Bay near Newport, Oregon. November 21, 1951}, volume = {no.15}, year = {1951}, note = {Reports on an application to construct "a log dump, to drive piling for a log storage pocket and log raft moorage, and to dredge and dump in King Slough of Yaquina Bay near Newport, Oregon." (p.1) Includes application to the Army Corps of Engineers. }, pages = {3 p.}, keywords = {human impacts, industrial development, King Slough, logging, sediments, shellfish, water quality, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/sj139235g}, author = {Marriage, Lowell D. and Oregon. Fish Commission. Shellfish Program} } @article {27661, title = {Investigation of proposed log boom on Yaquina River}, volume = {no.9}, year = {1949}, note = {Reports on an investigation of a request by the C.D. Johnson Lumber Company to construct a log boom two miles below Toledo on the Yaquina River. Local residents were concerned that the boom would damage clam beds. "Since it seems inconceivable that a log boom over the flat would tail to completely destroy the bed, granting of permission for such a boom is hereby opposed tram the standpoint of the clams involved." Includes a hand-drawn map of the area.}, pages = {5 p.}, keywords = {environmental policy and law, habitat conservation, logging, Softshell clam = Mya arenaria, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/sn009z526}, author = {Tollefson, Roger and Marriage, Lowell D. and Oregon. Fish Commission. Shellfish Program} } @article {27636, title = {Report on public hearing on Yaquina River, Oregon in respect to flood control : held at Toledo, Oregon - June 3, 1948 under auspices of Department of Army, Corps of Engineers}, volume = {no.2}, year = {1948}, note = {Report of a meeting about two diking districts on the Yaquina River. Tide gates had failed and brackish water was flowing into areas where cattle were grazing, to the dismay of some local farmers.}, pages = {1 p.}, keywords = {agriculture, tides, water quality, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/z603qz17c}, author = {Tollefson, Roger and Oregon. Fish Commission. Shellfish Program} } @proceedings {27426, title = {A new cetothere from the Miocene Astoria Formation of Newport, Oregon}, volume = {no.447}, year = {1934}, note = {excellent photographs and drawings}, publisher = {Carnegie Institution of Washington}, keywords = {cetaceans, Desmatophoca oregonensis, geological, marine mammals, paleosciences, Yaquina Bay, Yaquina River, Yaquina River Basin}, author = {Packard, Earl L. and Kellogg, Remington} }