@article {83222, title = {Coherence among Oregon Coast coho salmon populations highlights increasing relative importance of marine conditions for productivity}, journal = {Fisheries Oceanography}, volume = {32}, number = {3}, year = {2023}, note = {Anadromous fish like salmon have to live in two worlds: freshwater and the ocean. The scales of these two worlds are quite different: the freshwater environment works at the scale of a single stream, and environmental changes or stressors at the stream level affect a single population of fishes. On the other hand, oceanic changes or stressors cam affect broad regions or entire evolutionary significant units. By analyzing stock recruitment data for about sixty years along the Oregon Coast, some patterns become clear. Over this period, there have been significant changes in how fisheries are managed, from riparian buffers in forested lands to adding large woody debris to denuded streams. Despite these changes, it seems that oceanic conditions, especially the North Pacific Gyre Oscillation, which has dominated the marine environment since 1990, are determining population levels, rather than conservation efforts at the stream level. {\textquotedblleft}If Oregon Coast coho salmon populations become more synchronous, managers can expect to face new challenges driven by reductions in the population portfolio effect and increasingly variable marine conditions due to climate change{\textquotedblright} (from the Abstract).}, month = {2023,, May}, pages = {p.293-310}, keywords = {Alsea River, Beaver Creek, climate, Coho salmon = Oncorhynchus kisutch, ecosystem health, mathematical modeling, North Pacific Gyre Oscillation, Oregon Coast, Pacific Decadal Oscillation, population biology, Productivity, Salmon River Estuary, Siletz River, Siuslaw River, Umpqua River, Yaquina River}, doi = {https://doi.org/10.1111/fog.12630 }, author = {Davis, Melanie J. and Anthony, James and Ward, Eric J. and Firman, Julie and Lorion, Christopher} } @article {83251, title = {Northwest Forest Plan: The first 25 years (1994-2018): Watershed condition status and trends}, volume = { no.PNW-GTR-1010}, year = {2023}, note = {"This report describes status and trends in watershed condition across the Northwest Forest Plan (NWFP) area over the first 25 years since its inception in 1994. The program charged with this task is the Aquatic and Riparian Effectiveness Monitoring Program (AREMP), which has assembled information from field data collection, spatial datasets, and a host of landscape models to evaluate the status and trends in aquatic resources in streams and watersheds. Field data included hydrologic measurements (stream wetted widths and temperatures), geomorphic responses (instream wood and sediment), and biological responses (macroinvertebrates and aquatic organism passage){\textquotedblright} (from the Abstract). Forest manager{\textquoteright}s efforts have shown incremental progress in improving aquatic conditions in Federal forests, but in a context of climate change. More planning and adaptions in monitoring methods are warranted.}, month = {2023, Jun.}, pages = {165 p.}, institution = {Pacific Northwest Research Station}, address = {Portland, Or. }, keywords = {climate, environmental law and policy, erosion, general, hydrology, landslides, large woody debris, logging, Pacific Northwest, precipitation, riparian areas, sediment, terrestrial vegetation, water temperature}, url = {https://www.fs.usda.gov/pnw/pubs/pnw_gtr1010.pdf }, author = {Dunham, Jason and Hirsch, Christine and Gordon, Sean and Flitcroft, Rebecca and Chelgren, Nathan and Snyder, Marcia and Hockman-Wert, David and Reeves, Gordon and Andersen, Heidi and Anderson, Scott and Battaglin, William and Black, Tom and Brown, Jason and Claeson, Shannon and Hay, Lauren E. and Heaston, Emily and Luce, Charles and Nelson, Nathan and Penn, Colin and Raggon, Mark and Pacific Northwest Research Station.} } @article {83190, title = {Oregon shellfish farmers: Perceptions of stressors, adaptive strategies, and policy linkages}, journal = {Ocean and Coastal Management}, volume = {234}, number = {106475}, year = {2023}, note = {The demand for oysters in the United States exceeds supply, marking the oyster growing as an industry meriting support. On the west coast, growers must cope with climate change, particularly ocean acidification, as well as regulatory problems and labor shortages. In order to help resource managers help oyster farmers, the authors of this paper went to the growers. In 2022, they conducted detailed interviews with Oregon oyster growers, and their comments abundantly populate this paper. {\textquotedblleft}To expand and enhance United States oyster production, and support domestic food security and livelihoods, a better understanding of the limitations that oyster farmers{\textquoteright} experience, and corresponding pathways forward for adaptation is needed. Through semi-structured interviews conducted with commercial Oregon shellfish farmers, we assess the environmental, economic, social and regulatory stressors impacting oyster growing operations, and the corresponding adaptive strategies employed or envisioned by aquaculture farmers{\textquotedblright} (from the Abstract). The authors note adaptive strategies oyster growers adopt to cope, and advocate for more targeted outreach to support the oyster growers.}, month = {2023}, pages = {15 p.}, keywords = {aquaculture, aquatic invertebrates, bivalves, climate, commercial fisheries {\textendash} shellfish, Coos Bay, economics, environmental law and policy, mollusks, Netarts Bay, ocean acidification, oysters, South Slough, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, doi = {https://doi.org/10.1016/j.ocecoaman.2022.106475 }, author = {Green, Kristen Marie and Spalding, Ana K. and Ward, Melissa and Levine, Arielle and Wolters, Erika Allen and Hamilton, Sara Luanne and Rice, Lauren} } @article {83195, title = {Restoring Sea Otters to the Oregon Coast: A Feasibility Study}, year = {2023}, note = {When sea otters were exterminated in Oregon, there was no predator to stop the sea urchin population from expanding. Sea urchins eat kelp. More urchins mean less kelp. Less kelp means that many animals lose valuable habitat. Nearshore waters become rougher, because kelp beds cause the seas to lie down. The post-otter environment is less diverse and less hospitable. The Elakha Alliance (named for the Chinook Jargon word for sea otter) has been formed to realize the vision of bringing the sea otter back to Oregon. This book is about their dream. The authors have meticulously examined multiple aspects of the problem, from environmental to legal, and conclude that it is possible to bring otters back. Interestingly, estuaries may provide valuable launching grounds, offering more protection than the open sea. As keystone predators, sea otters would help restore an environment badly out of balance, and would provide many benefits aside from being adorable. As they say, the best dreams happen when we are awake. Colored maps, colored pictures.}, month = {2023}, pages = {249 p.}, institution = {Elakha Alliance}, edition = {2nd ed.}, address = {Siletz, Or.}, keywords = {Coos Bay, economics, ecosystem health, environmental law and policy, genetics, habitats, histology, historical, human impacts, marine mammals, population biology, Reintroductions, Sea otter = Enhydra lutris, sociology, Tillamook Bay, Translocations, Yaquina Bay}, url = {https://www.elakhaalliance.org/feasibility-study/ }, author = {Tinker, M. Tim and Estes, James and Bodkin, James and Larson, Shawn and Murray, Mike and Hodder, Jan and Elakha Alliance.} } @article {83118, title = {Benthic microbial fuel cell systems for marine applications}, journal = {Journal of Power Sources}, volume = {522}, number = {231033}, year = {2022}, note = {There{\textquoteright}s a lot happening on the seafloor these days: aquaculture, trawling, mining, communication cables. This means that there is a need for accurate, self-powered sensors for benthic environments. In this article, the authors report on a benthic microbial fuel cell and a power management platform that can recharge lithium batteries. The authors conclude that the systems described {\textquotedblleft}are now sufficiently mature to be applied within marine observation networks. They represent an alternative power source that may be integrated readily with many kinds of innovative sensors.{\textquotedblright} (from the Abstract)}, month = {2022, Feb. 28}, pages = {8 p.}, keywords = {chemical, Continental slope, energy, microbiology, sediments, Sensors, Yaquina Bay}, doi = {https://doi.org/10.1016/j.jpowsour.2022.231033 }, author = {Reimers, Clare E. and Wolf, Michael and Alleau, Yvan and Li, Cheng} } @article {83104, title = {Estimating the value of threatened species abundance dynamics}, journal = {Journal of Environmental Economics and Management}, volume = {113}, number = {102639}, year = {2022}, note = {How much are people willing to pay for marginal increases in abundance of threatened species? This paper looks at the value the public places on Coho salmon. {\textquotedblleft}Results provide direct evidence that conservation activities that achieve immediate abundance gains for a threatened species (or prevent immediate losses) produce significantly higher benefits than activities that gradually achieve the same abundance gains.{\textquotedblright} (from the Abstract)}, pages = {15 p.}, keywords = {abundance, Coho salmon = Oncorhynchus kisutch, depleted populations, ecological values, economics, general, Oregon Coast}, doi = {https://doi.org/10.1016/j.jeem.2022.102639 }, author = {Lewis, David J. and Kling, David M. and Dundas, Steven J. and Lew, Daniel K.} } @article {83116, title = {Protocol for using autoclaved intertidal sediment as a medium to enrich marine cable bacteria}, journal = {STAR Protocols}, volume = {3}, number = {101604}, year = {2022}, note = {Cable bacteria come from the family Desulfobulbaceae, but have not yet been identified as to genus and species. The name {\textquotedblleft}cable bacteria{\textquotedblright} comes from their tendency to form long networks of filaments. The length of the filaments allows cable bacteria to tap into energy harvested from sulfide oxidation. This article gives a protocol for extracting cable bacteria from natural sediment, inoculate cultivated sediment in the laboratory, and evaluate the quantity of cable bacteria in the cultivated sediment. Techniques for collection and extraction are described in detail.}, month = {2022, Aug 11}, pages = {12 p.}, keywords = {chemistry, Desulfobulbaceae, energy, Idaho Flats, microbiology, Sally{\textquoteright}s Bend, sediments, Sensors, Yaquina Bay}, doi = {https://doi.org/10.1016/j.xpro.2022.101604}, author = {Li, Cheng and Reimers, Clare E and Chace, Peter J.} } @article {83182, title = {A doubled down invasion of the northeast Pacific by the Asian mud shrimp, Upogebia major, and its coevolved bopyrid isopod parasite, Orthione griffenis}, journal = {Aquatic Invasions}, volume = {16}, number = {4}, year = {2021}, note = {The blue mud shrimp, Upogebia pugettensis, is known to be an ecosystem engineer, turning over and re-suspending, and aerating sediments (bioturbation), burrowing, and deposit feeding. The mud shrimp affects organic structure, nutrients, and the grain size of sediments in mudflats. Some of this activity creates difficulties for oyster growers, causing the application of pesticides in oyster growing areas in the 1950s. It may be that the changes in the ecosystem caused by introduced oysters and pesticides opened the doors for subsequent invasions. In 1999, a parasitic isopod was discovered to be infecting the native mud shrimp, and effectively sterilizing the shrimp. A related species, the Asian mud shrimp. Upogebia major, is less susceptible to the parasite, and has begun to fill in spaces formerly occupied by the blue mud shrimp. While this article is concerned with mud shrimp populations in California, the dynamics discussed are relevant to Oregon estuaries. If the ways our estuaries are engineered changes thanks to the double invasion, the way we manage our estuaries will also have to change. This is an open-access article, and it has also been re-printed as no.21-021 in the ORESU-R series.}, month = {2021}, pages = {p.721{\textendash}749}, keywords = {Alsea Bay, Asian mud shrimp Upogebia major, bioturbation, community ecology, Coos Bay, depleted populations, Griffen{\textquoteright}s isopod = Orthione griffensis, introduced species, Mud shrimp = Upogebia pugettensis, natural resource management, Nestucca Bay, Netarts Bay, Upogebia macginitieorum, Yaquina Bay}, doi = {https://doi.org/10.3391/ai.2021.16.4.09}, url = {https://ir.library.oregonstate.edu/concern/articles/k643b826b }, author = {Chapman, John W. and Li, Jingchun and McGowan, Michael F. and Breitenstein, Ralph A. and Appy, Ralph and Hieb, Kathryn A. and Piotrowski, Christina N. and Elder, Leanne E.} } @article {83058, title = {Exploring biophysical linkages between coastal forestry management practices and aquatic bivalve contaminant exposure}, journal = {Toxics }, volume = {9}, number = {3}, year = {2021}, note = {Current forestry management practices are not doing very well at keeping herbicides and pesticides within the boundaries of the forest. In this important article, the authors describe a study of bivalves to look for contamination from pesticides and other chemicals used in forestry. They found pesticides in 38\% of bivalves sampled, with some watersheds more contaminated than others, and with seasonal variations. The authors mildly note, {\textquotedblleft}Details about types and levels of exposure provide insight into effectiveness of current forest management practices in controlling transport of forest-use pesticides{\textquotedblright} (from the Abstract). Good data visualization. This is an Open-Access article.}, month = {2021, Mar.}, pages = {article 46, 25 p. }, keywords = {agriculture, Alsea River, aquatic invertebrates, bivalves, clams, commercial fisheries - shellfish, Coos Bay, forestry, fungicides, herbicides, human impacts, metabolism, molluscs, mussels, Nehalem River, Nestucca River, oysters, Pacific oyster = Crassostrea gigas, pesticides, precipitation, recreational fisheries {\textendash} shellfish, Siletz River, Siuslaw River, Smith River (Umpqua), Softshell clam = Mya arenaria, stress, toxicity, Western pearl mussel = Margaritifera falcata, Yaquina River}, doi = {https://doi.org/10.3390/toxics9030046}, url = {https://www.mdpi.com/2305-6304/9/3/46 }, author = {Scully-Engelmeyer, Kaegan and Granek, Elise F. and Nielsen-Pincus, Max and Lanier, Andy and Rumrill, Steven S. and Moran, Patrick and Nilsen, Elena and Hladik, Michelle L. and Pillsbury, Lori} } @article {83184, title = {Larval development in the Pacific oyster and the impacts of ocean acidification : differential genetic effects in wild and domesticated stocks}, journal = {Evolutionary Applications}, volume = {14}, year = {2021}, note = {Oyster aquaculture contributes over $10 million yearly to the Oregon economy. Most Oregon oyster growers cultivate the Pacific oyster, a non-native species. In this article, the authors examine the capacity of the Pacific oyster to adapt to oceanic acidification. The authors analyzed allele frequencies in wild (naturalized) and imported Pacific oysters in acidic waters. {\textquotedblleft}These results indicate the potential for a rapid adaptive response of oyster populations to OA conditions; however, underlying genetic changes associated with larval development differ between these wild and domesticated oyster stocks and influence their adaptive responses to OA conditions{\textquotedblright} (from the Abstract). This article was reprinted in the Oregon Sea Grant reprint series ORESU-R as no.21-015.}, pages = {p.2258-2272}, keywords = {carbon dioxide, carbonic acid, climate, genetics, ocean acidification, Pacific oyster = Crassostrea gigas, Willapa Bay, Yaquina Bay Molluscan Broodstock Repository}, doi = {10.1111/eva.13289}, url = {https://ir.library.oregonstate.edu/concern/articles/4b29bd88m }, author = {Durland, Evan and Pierre De Wit, and Meyer, Eli and Langdon, Christopher J.} } @article {83100, title = {Management of anadromous lampreys: Common threats, different approaches}, journal = {Journal of Great Lakes Research. Supplement}, volume = {47 }, number = {Sup.1 }, year = {2021}, note = {This review article summarizes what is known about the statuses of many lamprey species around the world. The usual suspects, primarily human activity and climate change get the blame for most population declines. Management of the Pacific lamprey is a bright spot, largely due to the efforts and advocacy of Native Americans. The Western river lamprey, on the other hand, suffers from inadequate research, which is needed in order to support conservation.}, month = {2021, Dec.}, pages = {S129-S146}, keywords = {Alsea River, Beaver Creek, climate, Cummins Creek, dams, depleted populations, human impacts, land use, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), River lamprey = Lampetra ayresi, Salmon River,, Siletz River, Siuslaw River, Tenmile Creek, Umpqua River, water use, Yachats River, Yaquina River}, doi = {https://doi.org/10.1016/j.jglr.2020.09.005 }, author = {Clemens, Benjamin J. and Arakawa, Hiroaki and Baker, Cindy and Coghian, Stephen and Kucheryavyy, Aleksandr and Lampman, Ralph and Lan{\c c}a, Maria Jo{\~a}o and Mateus, Catarina Sofia and Miller, Allison and Nazari, Hassan and Peque{\~n}o, Germ{\'a}n and Sutton, Trent M. and Yanai, Seiji} } @article {83179, title = {Fine-scale spatial and temporal genomic variation among Dungeness crab Cancer magister larval recruits in the California Current Ecosystem}, journal = {Marine Ecology Progress Series}, volume = {649}, year = {2020}, note = {{\textquotedblleft}Dynamic marine environments can shape complex spatial and temporal patterns in the population connectivity of marine species, and this is often exemplified in species with long larval phases. Here, we used a genotyping-by-sequencing (GBS) approach to examine fine-scale spatial and temporal genomic variation among Dungeness crab Cancer magister larval recruits sampled in the California Current Ecosystem. . . Overall, our findings provide evidence for high connectivity within Dungeness crab, but suggest that selective pressures and ocean conditions influence the genetic composition of larval recruits both intra- and inter-annually{\textquotedblright} (from the Abstract). This publication was re-printed online in the Sea Grant reprint series as ORESU-R-20-010.}, month = {2020}, pages = {p.67-81}, keywords = {aquatic invertebrates, California Current Ecosystem, Coos Bay, crustaceans, Dungeness crab = Metacarcinus magister (Cancer magister), genetics, larvae, Pacific Decadal Oscillation, population biology, Yaquina Bay}, doi = {https://doi.org/10.3354/meps13453 }, url = {https://ir.library.oregonstate.edu/concern/articles/8910k215z}, author = {Lee, Elizabeth M. J. and O{\textquoteright}Malley, Kathleen G.} } @article {83113, title = {Temporal and habitat differences in the juvenile demersal fish community at a marine-dominated northeast Pacific estuary}, journal = {Fisheries Research}, volume = {227}, number = {105557}, year = {2020}, note = {Estuaries provide habitat for many juvenile marine fishes. A lack of systematic studies of fish communities in estuaries has hampered our understanding of estuaries{\textquoteright} roles in the early life histories of many marine fish. In this article, the authors compare the community structure of juvenile fishes in the Yaquina Estuary for 2008-2009, 2012-2013 and 2016-2017. Sampling took place around docks and eelgrass beds. {\textquotedblleft}Greater abundances and reduced change in communities over time at eelgrass sites suggests that maintaining these habitats is potentially critical for many estuary-rearing species and temporal changes in these communities highlights the importance of long-term monitoring.{\textquotedblright} (from the Abstract)}, month = {2020, Jul.}, pages = {11 p.}, keywords = {community ecology, eelgrass = Zostera marina, habitats, juvenile fishes, Pacific Decadal Oscillation, Pacific staghorn sculpin = Leptocottus armatus, Rockfish = Sebastes spp., Saddleback gunnel = Pholis ornata, salinity, temporal distribution, upwelling, water temperature, Yaquina Bay}, doi = {https://doi.org/10.1016/j.fishres.2020.105557 }, author = {Schwartzkopf, Brittany D. and Whitman, Alison D. and Lindsley, Amy J. and Heppell, Scott A.} } @article {83061, title = {Western Oregon adult coho salmon spawning survey data report}, volume = {no.OPSW-ODFW-2020-3}, year = {2020}, note = {Good statistics on wild salmon runs. The Oregon Coast saw lower than average runs, with wild salmon spawning at 76\% of the 29-year average.}, month = {2020, May}, pages = {34 p.}, institution = {Oregon Adult Salmonid Inventory \& Sampling Project, ODFW}, address = {Corvallis, Or.}, keywords = {abundance, Alsea River, Beaver Creek (Lincoln), Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, fecundity, Floras Creek, geographic distribution, hatchery salmonids, Mill Creek (Siletz), Mill Creek (Yaquina), Necanicum River, Nehalem River, Nestucca River, North Umpqua River, Salmon River, Siletz River, Siuslaw River, Sixes River, South Umpqua River, temporal distribution, Tillamook Bay, Umpqua River, wild salmonids, Yaquina River}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A972078/datastream/OBJ/download/2019.pdf }, author = {Sounhein, Briana and Lewis, Mark and Weeber, Matt} } @article {83062, title = {Western Oregon adult coho salmon spawning survey data report}, volume = {no. OPSW-ODFW-2021-3}, year = {2020}, note = {The COVID-19 epidemic reduced the number of spawning surveys. Available data showed a strong skew based on geography: the Lower Columbia wild salmon runs were larger than normal, the Oregon Coast region had 88\% of the 30-year average, while wild salmon runs in southern Oregon were greatly reduced.}, month = {2021, June}, pages = {34 p.}, institution = {Oregon Adult Salmonid Inventory \& Sampling Project, ODFW}, address = {Corvallis, Or.}, keywords = {abundance, Alsea River, Beaver Creek (Lincoln), Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, fecundity, Floras Creek, geographic distribution, hatchery salmonids, Mill Creek (Siletz), Mill Creek (Yaquina), Necanicum River, Nehalem River, Nestucca River, North Umpqua River, Salmon River, Siletz River, Siuslaw River, Sixes River, South Umpqua River, temporal distribution, Tillamook Bay, Umpqua River, wild salmonids, Yaquina River}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A972079/datastream/OBJ/download/2020.pdf}, author = {Sounhein, Briana and Lewis, Mark and Weeber, Matt} } @mastersthesis {83175, title = {Big Fishery, Big Data, and Little Crabs: Using a Genomic Approach to Examine Larval Recruitment Patterns of Dungeness Crab (Cancer magister) in the California Current Ecosystem}, year = {2019}, note = {The California Current Ecosystem is a highly productive area of offshore waters extending from southern California to southern British Columbia. Its most valuable commodity is the Dungeness crab. The Dungeness crab fishery is by far the most valuable fishery on the North American west coast. Intensive study of Dungeness crabs in Coos Bay indicates that ocean conditions affect the number of surviving larval crabs (megalopae) and their distribution. In this Master{\textquoteright}s thesis, the author reports on studies of larval crabs in 2014, 1017 and 2018 in Coos Bay and Yaquina Bay. The author{\textquoteright}s aim was {\textquotedblleft}was to better understand how ocean conditions influence larval transport and the ultimate population connectivity of the Dungeness crab within and between the marine ecosystems along the west coast of North America: the California Current Ecosystem (CCE), the Salish Sea Ecosystem (SSE), and the Gulf of Alaska Ecosystem (GOA){\textquotedblright} (from the Abstract). By better understanding genetics, researchers will better understand population connectivity, an important part of species{\textquoteright} resilience in a time of climate change. The major professor was Kathleen G. O{\textquoteright}Malley.}, pages = {101 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fisheries and Wildlife, Fisheries Science}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, California Current, Coos Bay, crustaceans, Dungeness crab = Metacarcinus magister (Cancer magister), genetics, larvae, population biology, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/0c483r477 }, author = {Lee, Elizabeth M. J.} } @article {82621, title = {Climate vulnerability assessment for Pacific salmon and steelhead in the California Current Large Marine Ecosystem}, journal = {PLoS One}, volume = {14}, number = {7}, year = {2019}, note = {This article is a major scientific overview of the vulnerability of Pacific Coast anadromous salmonids to climate change. {\textquotedblleft}Nearly all listing units faced high exposures to projected increases in stream temperature, sea surface temperature, and ocean acidification. . . Anthropogenic factors, especially migration barriers, habitat degradation, and hatchery influence, have reduced the adaptive capacity of most steelhead and salmon populations. Enhancing adaptive capacity is essential to mitigate for the increasing threat of climate change. Collectively, these results provide a framework to support recovery planning that considers climate impacts on the majority of West Coast anadromous salmonids{\textquotedblright} (from the Abstract). Projections were made about Oregon coast coho salmon.}, pages = {e0217711}, edition = {2019, Jul. 24}, keywords = {Oregon Coast, Pacific salmonids = Oncorhynchus spp., Coho salmon = Oncorhynchus kisutch, climate change, depleted populations, ecosystem health, endangered species, habitats, hatcheries, human impacts, life history, ocean acidification, water temperatur}, doi = {https://doi.org/10.1371/journal.pone.0217711 }, url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0217711 }, author = {Crozier, Lisa G. and McClure, Michelle M. and Beechie, Tim and Bograd, Steven J. and Boughton, David A. and Carr, Mark and Cooney, Thomas D. and Dunham, Jason B. and Greene, Correigh M. and Haltuch, Melissa A. and Hazen, Elliott L. and Holzer, Damon M. and Huff, David O. and Johnson, Rachel C. and Jordan, Chris E. and Kaplan, Isaac C. and Lindley, Steven T. and Mantua, Nathan J. and Moyle, Peter B. and Myers, James M. and Nelson, Mark W. and Spence, Brian C. and Weitkamp, Laurie A. and Williams, Thomas H. and Willis-Norton, Ellen} } @article {82531, title = {Insights into estuary habitat loss in the western United States using a new method for mapping maximum extent of tidal wetlands}, journal = {PLoS One}, volume = {14}, number = {8}, year = {2019}, note = {This article recounts the techniques that led to the production of the 2017 maps to model the effects of sea level rise. The authors used lidar digital elevation models and other elevation models to develop new maps of current and historical wetlands on the United States West Coast. Their work shows that about 85\% of historical wetlands have been lost, with most losses near major river deltas. {\textquotedblleft}The new maps will help interested groups improve action plans for estuarine wetland habitat restoration and conservation, and will also provide a better baseline for understanding and predicting future changes with projected sea level rise{\textquotedblright} (from the Abstract).}, month = {2019, Aug. 14}, keywords = {climate, habitats, human impacts, salinity, sea level, wetland vegetation, wetlands, remote sensing, mathematical modeling}, doi = {https://doi.org/10.1371/journal.pone.0218558 }, url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0218558 }, author = {Brophy, Laura S. and Greene, Correigh M. and Hare, Van C. and Holycross, Brett and Lanier, Andy and Heady, Walter N. and O{\textquoteright}Connor, Kevin and Imaki, Hiroo and Haddad, Tanya and Dana, Randy} } @article {83110, title = {Spatial and temporal diving behavior of non-breeding common murres during two summers of contrasting ocean conditions}, journal = {Journal of Experimental Marine Biology and Ecology}, volume = {517}, year = {2019}, note = {2013 and 2015 were not good breeding years for the common murre in the Pacific Northwest. Instead of finding nest sites in breeding colonies, most murres dispersed to areas such as estuaries having greater concentrations of fish. There were differences in ocean conditions in the two years studied, particularly a marine heatwave in 2013-2014, and these differences led to variations in diving behavior and foraging locations. This study has interesting implications for murre life history and conservation.}, month = {2019, Aug.}, pages = {p.13-24}, keywords = {birds, climate, Columbia River, common murre = Uria aalge, energetics, feeding behavior, Grays Harbor (Wa.), life history, Tillamook Head, Yaquina Head}, doi = {https://doi.org/10.1016/j.jembe.2019.05.009 }, author = {Loredo, Stephanie A. and Orben, Rachel A. and Suryan, Robert M. and Lyons, Donald E. and Adams, Josh and Stephensen, Shawn W.} } @article {83060, title = {Western Oregon adult coho salmon spawning survey data report}, volume = {no. OPSW-ODFW-2019-3}, year = {2019}, note = {Good statistics on salmon runs. Wild coho spawning was low in 2018, at 58\% of the 28-year average.}, month = {2019, Nov.}, pages = {33 p.}, institution = {Oregon Adult Salmonid Inventory \& Sampling Project, ODFW}, address = {Corvallis, Or.}, keywords = {abundance, Alsea River, Beaver Creek (Lincoln), Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, fecundity, Floras Creek, geographic distribution, hatchery salmonids, Mill Creek (Siletz), Mill Creek (Yaquina), Necanicum River, Nehalem River, Nestucca River, North Umpqua River, Salmon River, Siletz River, Siltcoos Lake, Siuslaw River, Sixes River, South Umpqua River, Tahkenitch Lake, temporal distribution, Tenmile Lake, Tillamook Bay, Umpqua River, wild salmonids, Yaquina River}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A939016/datastream/OBJ/download/2018.pdf }, author = {Sounhein, Briana and Lewis, Mark and Weeber, Matt} } @mastersthesis {83152, title = {Comparison of Habitat Restoration and Enhancement Methods for Olympia Oysters (Ostrea lurida) in Yaquina Bay, Oregon}, year = {2018}, note = {The native Olympia oyster played an important role in the history and pre-history of Yaquina Bay, from sustaining Native Americans to providing an economic incentive for the development of the town of Newport. Due to pollution and over-fishing, the Olympia oyster came close to disappearing from Yaquina Bay. Now, thanks to restoration efforts, the delicious mollusk is back. This Master{\textquoteright}s thesis explores three methods of encouraging juvenile Olympia oyster settlement. {\textquotedblleft}To determine the efficacy of different methods of oyster habitat restoration methods in enhancing juvenile life history traits, this study compared the settlement, growth, and mortality of wild juvenile Olympia oysters among three shell treatments: (1) bagged shells and (2) loose shells, which are commonly used methods of oyster habitat restoration, and (3) rafted-line shells . . . {\textquotedblleft} (from the Abstract) William C. Hanshumaker was the major professor.}, pages = {85 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {College of Earth, Ocean, and Atmospheric Sciences. Marine Resource Management}, address = {Corvallis, Or.}, keywords = {aquaculture, aquatic invertebrates, bivalves, habitat restoration, mollusks, natural resource management, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Oregon Oyster Farm, oysters, Oysterville, population biology, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/fj2367689}, author = {Law, Karen H.} } @article {82016, title = {Ecological and biological studies of ocean rafting: Japanese tsunami marine debris in North America and the Hawaiian Islands}, journal = {Aquatic Invasions}, volume = {13}, year = {2018}, note = {{\textquotedblleft}This is one of the papers from the special issue of Aquatic Invasions on {\textquoteleft}Transoceanic Dispersal of Marine Life from Japan to North America and the Hawaiian Islands as a Result of the Japanese Earthquake and Tsunami of 2011.{\textquoteright}{\textquotedblright} (Co-Editors{\textquoteright} Note). This article is an introduction to the special issue of Aquatic Invasions. It summarizes the largest examples of tsunami debris found on the American Pacific coast and recounts the discovery of many new Japanese species identified as a result of research. Includes color photographs. This is an open-access article.}, month = {2018, Feb.}, pages = {p.1-9}, keywords = {Agate Beach, algae, aquatic invertebrates, coastal hazards, Coos Bay, earthquakes, genetics, geographical distribution, Gleneden Beach, introduced species, morphology, Pacific Coast, Seal Rock, species list, taxonomy, tsunamis}, doi = {https://doi.org/10.3391/ai.2018.13.1.01}, url = {https://tinyurl.com/2pxmp6e8}, author = {Carlton, James T. and Chapman, John W. and Geller, Jonathan B. and Miller, Jessica A. and Ruiz, Gregory M. and Carlton, Deborah A. and McCuller, Megan I. and Treneman, Nancy C. and Steves, Brian P. and Breitenstein, Ralph A. and Lewis, Russell and Bilderback, David and Bilderback, Diane and Haga, Takuma and Harris, Leslie H.} } @article {80516, title = {Evaluating tidal wetland restoration performance using National Estuarine Research Reserve System reference sites and the Restoration Performance Index (RPI)}, journal = {Estuaries and Coasts}, volume = {41}, year = {2018}, note = {Oregon{\textquoteright}s estuaries have lost a lot of wetlands. Depending on the estuary, anywhere from 2\% to 94\% of native wetlands have been lost. Today, wetlands are being restored. But how do we know how successful wetland restoration projects may be? This article describes an analytical tool, the Restoration Performance Index, which compares different parameters between restored wetlands and unmodified reference sites. The authors compared 17 tidal wetland restoration projects in order to determine the level of restoration achieved, to compare excavation and hydrologic restoration projects, to identify key indicators for restoration effectiveness, and to evaluate the National Estuarine Research Reserve System as a source for reference sites. Full text of this article is available from the authors via ResearchGate.}, pages = {p.36-51}, keywords = {Chesapeake Bay, Coos Bay, environmental monitoring, hydrology, marsh restoration, Narragansett Bay, North Carolina, restoration ecology, South Slough, Toledo (Or.), Wells (Maine), wetland vegetation, Yaquina River Estuary}, doi = {10.1007/s12237-017-0220-7}, author = {Raposa, Kenneth B. and Lerberg, Scott and Cornu, Craig and Fear, John and Garfield, Nina and Peter, Christopher and Weber, Robin L. J. and Moore, Gregg and Burdick, David and Dionne, Michelle} } @article {83011, title = {Expansion and systematics redefinition of the most threatened freshwater mussel family, the Margaritiferidae}, journal = {Molecular Phylogenetics and Evolution}, volume = {127}, year = {2018}, note = {In this article, the evolution, distribution and taxonomy of the freshwater pearl mussel family, Margaritiferidae, is explored. Fossils as well as genetic data were used to model the diversification of this family. Maps, charts.}, month = {2018, Oct.}, pages = {p.98-118}, keywords = {aquatic invertebrates, bivalves, evolution, general, genetics, geographic distribution, molluscs, morphology, mussels, phylogeny, taxonomy}, doi = {https://doi.org/10.1016/j.ympev.2018.04.041 }, author = {Lopes-Lima, Manuel and Bolotov, Ivan N. and Do, Van Tu and Aldridge, David C. and Fonseca, Miguel M. and Gan, Han Ming and Gofarov, Mikhail Y. and Kondakov, Alexander V. and Pri{\'e}, Vincent and Sousa, Ronaldo and Varandas, Simone and Vikhrev, Ilya V. and Teixeira, Amilcar and Wu, Rui-Wen and Wu, Xiaoping and Zieritz, Alexandra and Froufe, Elsa and Bogan, Arthur E.} } @article {82856, title = {Genetic by environment interactions for harvest traits of the Pacific oyster Crassostrea gigas (Thunberg) across different environments on the West Coast, USA}, journal = {Journal of Shellfish Research}, volume = {37}, number = {1}, year = {2018}, note = {Oyster growers in the Pacific Northwest operate under a wide range of environmental conditions, from the sedate waters of Puget Sound to the dynamic coastal seas. How can Pacific oysters be bred to increase yields in such different conditions? This article describes a study of oysters grown in nine different test localities, describes the test results and outlines a strategy for increasing yield while maintaining genetic diversity.}, month = {2018, Apr.}, pages = {p.49-61}, keywords = {aquaculture, aquatic invertebrates, bivalves, Dabob Bay (Wa.), genetics, hypoxia, Molluscan Broodstock Program, molluscs, Netarts Bay, ocean acidification, Oyster Bay (Wa.), Pacific oyster = Crassostrea gigas, salinity, Sequim Bay (Wa.), Thorndyke Bay (Wa.), Totten Inlet (Wa.), Westcott Bay (Wa.), Willapa Bay (Wa.), Yaquina Bay}, doi = {https://doi.org/10.2983/035.037.0104 }, author = {RodriguesDeMelo, Claudio Manoel and Morvezen, Romain and Durland, Evan and Langdon, Christopher J.} } @mastersthesis {83170, title = {Movement, Dive Behavior, and Habitat-Use of Common Murres (Uria aalge) in the Northern California Current System under Variable Ocean Conditions}, year = {2018}, note = {This Masters thesis concerns the foraging and diving behavior of common murres off Oregon, Washington and British Columbia. The study covers the 2013 and 2015. This means that a year of unusually warm water (2013, the year of {\textquotedblleft}the Blob{\textquotedblright} of warm water off the west coast), and 2015, a year with a more typical climate, were studied. Location trackers were affixed to non-breeding murres and their patterns of foraging were studied. The author also studied diving behavior in murres. This is an interesting look at how predatory seabirds handle different oceanographic conditions in a changing world. Major professors were Robert M. Suryan and Donald E. Lyons.}, pages = {96 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fisheries and Wildlife, Wildlife Science}, address = {Corvallis, Or.}, keywords = {birds, Cannon Beach (Or.), Columbia River, common murre = Uria aalge, diet, energetics, feeding behavior, Food conditions, geographical distribution, Goose Island (BC), habitats, temporal distribution, water temperature, Yaquina Head}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/kk91fr63w }, author = {Loredo, Stephanie A.} } @article {80456, title = {Characterizing fisheries connectivity in marine social-ecological systems}, journal = {ICES Journal of Marine Science}, volume = {74}, year = {2017}, note = {How do fishers adapt to changes in ecosystems and/or fisheries management? They can change the area where they fish. They can find other income sources or leave fishing. Or they can change the areas into which they put their energy by diversifying and working multiple fisheries. West Coast fishers tend to be resilient generalists, able to switch from one fishery to another as the need arises, and cope with different management regimes. Interlinked networks of potential fisheries constitute {\textquotedblleft}fisheries connectivity,{\textquotedblright} and are the subject of this article. The authors analyze networks of multiple fisheries in the California Current Large Marine Ecosystem in 2009-2010. They calculate the relative importance of particular fisheries, and model fisheries networks and vulnerability to change in different communities. On the West Coast, either the Dungeness crab or the spiny lobster fisheries were the most important. The authors point out that species unconnected by food webs may be linked due to fisheries connectivity, and that understanding these relationships will be an important part of future resource management. }, pages = {p.2087-2096}, keywords = {Astoria (Or.), Garibaldi (Or.), Netarts Bay, Nehalem Bay, Siletz Bay, Newport (Or.), Depoe Bay, Alsea Bay, Florence (Or.), Winchester Bay, Charleston (Or.), Bandon, (Or.), economics, natural resource management, mathematical modeling, commercial fisheri}, doi = {doi:10.1093/icesjms/fsx128}, author = {Fuller, Emma C. and Sambouri, Jameal F. and Stoll, Joshua S. and Levin, Simon A. and Watson, James R.} } @article {80351, title = {Demographic and genetic connectivity: the role and consequences of reproduction, dispersal and recruitment in seagrasses}, journal = {Biological Reviews}, volume = {92}, year = {2017}, note = {The valuable ecological roles provided by seagrasses are well known. Population connectivity in seagrasses, however, is less well understood. {\textquotedblleft}Accurate estimation of connectivity among populations is fundamental for determining the drivers of population resilience, genetic diversity, adaptation and speciation{\textquotedblright} (from the Abstract). This article provides a review about what is known about this aspect of seagrass ecology around the world, and includes a study of eelgrass in Yaquina Bay. The authors point out what is known, gaps in knowledge, and potential directions for future research. }, pages = {p.921-938}, keywords = {aquatic vegetation, eelgrass = Zostera marina, genetics, recruitment, reproductive biology, Yaquina Bay}, doi = {doi: 10.1111/brv.12261 }, author = {Kendrick, Gary A. and Orth, Robert J. and Statton, John and Hovey, Renae and Ruiz Montoya, Leonardo and Lowe, Ryan J. and Krauss, Siegfried L. and Sinclair, Elizabeth A.} } @article {80561, title = {Effect of green macroalgal blooms on the behavior, growth, and survival of cockles (Clinocardium nuttallii) in Pacific NW estuaries}, journal = {Marine Ecology Progress Series}, volume = {582}, year = {2017}, note = {This paper examines the effects of algal blooms in Yaquina Bay on a population of cockle clams. Sediment under algal mats lacks dissolved oxygen, and decomposing algae release chemical compounds that affect the clams. The authors found that macroalgal mats caused cockles to emerge from sediment, and to move away from the algae. Clams atop the sediment were stressed, vulnerable to predation and particularly vulnerable to temperature stress. {\textquotedblleft}Regardless of nutrient source, our research demonstrates that macroalgal mats pose a threat to the growth and survival of these intertidal bivalves{\textquotedblright} (p.118). The online link includes access to supplemental videos illustration aspects of the cockle{\textquoteright}s biology.}, pages = {p.105-120}, keywords = {aquatic invertebrates, behavior, bivalves, Cockle clam = Clinocardium nuttallii, green algae, Hatfield Marine Science Center, Idaho Flats, Idaho Point (Hinton Point), molluscs, predation, seagulls = Larus spp., Yaquina Bay}, doi = {https://doi.org/10.3354/meps12328 }, url = {https://www.int-res.com/articles/suppl/m582p105_supp/}, author = {Lewis, Nathaniel S. and DeWitt, Theodore H.} } @article {80581, title = {Investigation of Crangon species assemblage and spawning patterns in Yaquina Bay, OR [PowerPoint Presentation]}, year = {2017}, note = {This PowerPoint presentation was part of a final project for the undergraduate class Biology 450, Marine Biology. The authors examined the distribution of four species of shrimp in different environments: in the main channel of Yaquina Bay, on a nearby beach, and offshore. The bay shrimp was the most prevalent species in the bay, while the Alaskan bay shrimp dominated offshore. The authors endeavored to learn where the most gravid Alaskan bay shrimp females were to be found, but found no difference in the percentage of gravid females between channel and offshore habitats, which raises the questions, where do they spawn? and is salinity a predictor of gravidity in Crangon females? More research is needed.}, publisher = {Oregon State University}, address = {Corvallis, Or.}, keywords = {Alaskan bay shrimp = Crangon alaskensis, Bay shrimp = Crangon franciscorum, fecundity, geographical distribution, Main channel, Smooth bay shrimp = Crangon stylirostris, species composition, Stout shrimp = Crangon alba, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/parent/6108vc83q/undergraduate_thesis_or_projects/9880vs43j }, author = {Danilchik, Nikolai M. and Loewenherz, Larkin} } @article {83059, title = {Western Oregon adult coho salmon, 2017 spawning survey data report}, volume = {no. OPSW-ODFW-2018-3}, year = {2017}, note = {Good statistics on salmon runs. Before 2017, this publication was called, Status of Oregon stocks of coho salmon.}, month = {2019, Jan.}, pages = {33 p.}, institution = {Oregon Adult Salmonid Inventory \& Sampling Project, ODFW}, address = {Corvallis, Or.}, keywords = {abundance, Alsea River, Beaver Creek (Lincoln), Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, fecundity, Floras Creek, geographic distribution, hatchery salmonids, Necanicum River, Nehalem River, Nestucca River, North Umpqua River, Salmon River, Siletz River, Siuslaw River, Sixes River, South Umpqua River, temporal distribution, Tillamook Bay, Umpqua River, wild salmonids, Yaquina River}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A814196/datastream/OBJ/download/2017.pdf }, author = {Sounhein, Briana and Brown, Eric and Lewis, Mark and Weeber, Matt} } @article {77271, title = {Characterization of ecosystem structure within transplanted and natural eelgrass (Zostera marina) beds}, journal = {Northwest Science}, volume = {90}, year = {2016}, note = {The native seagrass Zostera marina plays a vital role in Oregon estuaries, producing oxygen and providing valuable habitat for many species. In 2010, NOAA moved its Marine Operations Center {\textendash} Pacific to Newport, Oregon. It was necessary to dredge the bay to put in new docks for NOAA research vessels, and in the process a .68 acre eelgrass bed was destroyed. In order to mitigate this damage, the original eelgrass was replanted in a new site. In this paper, the authors report on the results of the transplantation, noting ecological diversity, sediment characteristic and species abundance throughout the year.}, pages = {p.355-375}, keywords = {ecosystem health, eelgrass = Zostera marina, geographical distribution, habitat restoration, habitats, Hatfield Marine Science Center, Port of Newport, sediments, species composition, species list, temporal distribution, tides, Yaquina Bay}, doi = {doi: http://dx.doi.org/10.3955/046.090.0314}, author = {Lewis, Nathaniel S. and Henkel, Sarah K.} } @article {77446, title = {The demographic consequences of growing older and bigger in oyster populations}, journal = {Ecological Applications}, volume = {26}, year = {2016}, note = {Modeling populations of marine animals, particularly animals that reproduce through broadcast spawning, is . . . complicated. In the case of oysters, there is great variation between size and age. For example, larger female oysters can hold more eggs and produce many more young than smaller females, but despite their difference in size, they can be the same age. Older oysters are more susceptible to disease, while younger oysters are more vulnerable to predation. Thus, a good population model must take both age and size into account. {\textquotedblleft}To better understand how population structure, particularly that of age and size, impacts restoration and management decisions, we developed and compared a size-structured integral projection model (IPM) and an age-and size structured IPM, using a population of Crassostrea gigas oysters in the northeastern Pacific Ocean{\textquotedblright} (from the Abstract).}, pages = {p.2206-2217}, keywords = {age composition, aquaculture, bivalves, demographics, fecundity, growth, Hatfield Marine Science Center, mathematical modeling, Molluscan Broodstock Program, molluscs, oysters, Pacific oyster = Crassostrea gigas, population biology, recruitment, Yaquina Bay}, doi = {doi: 10.1002/eap.1374}, author = {Moore, Jacob L. and Lipcius, Romuald N. and Puckett, Brandon and Schreiber, Sebastian J.} } @article {77366, title = {Genetic evidence supports recolonization by Mya arenaria of western Europe from North America}, journal = {Marine Ecology Progress Series}, volume = {549}, year = {2016}, note = {The softshell clam is found in North America and in Europe. Its origin has been debated. We know that this clam was transplanted by humans to western North America. But where did it come from? Were there refuges in southern Europe where the clam survived the hardships of the Ice Ages? Did it migrate to North America from Europe, or was the migration in the other direction? In this article, the authors report on genetic analysis and conclude that the species originated in eastern North America and subsequently colonized Europe. Specimens from Alsea Bay and Yaquina Bay were part of the analysis. }, month = {2016}, pages = {p.99-112}, keywords = {Yaquina Bay, Alsea Bay, Softshell clam = Mya arenaria, genetics, population biology, geographic distribution,}, doi = {doi: 10.3354/meps11672}, url = {https://www.int-res.com/articles/meps2016/549/m549p099.pdf}, author = {Cross, M.E. and Bradley, C. R. and Cross, T. F. and Culloty, S. and Lynch, S. and McGinnity, P. and O{\textquoteright}Riordan, R. M. and Vartia, S. and Prod{\H o}hl, P. A.} } @mastersthesis {77351, title = {Juvenile Rockfish (Sebastes spp.) Community Composition and Habitat use of Yaquina Bay, Oregon}, year = {2016}, note = {Estuaries offer important habitats for many species of fish. Rockfish are among the fishes that use estuaries as nurseries for their young. In recent years, most West Coast estuaries have undergone extensive development. How has human-caused environmental change affected fish habitats? In this thesis, the author explored Yaquina Bay to determine what species of rockfish were in Yaquina Bay, studied how rockfish abundance changed with the seasons, and contrasted the use of natural habitat (eelgrass beds) with anthropogenic habitat (piers). Several previously undocumented species of rockfish were found to use the bay, and patterns of juvenile rockfish use of the estuary are shown. Valuable new information on important species is presented. Major professor was Scott Heppell.}, pages = {78 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fisheries and Wildlife, Fisheries Science}, address = {Corvallis, Or.}, keywords = {Black rockfish = Sebastes melanops, Bocaccio rockfish = Sebastes paucispinis, Brown rockfish = Sebastes auriculatus, Canary rockfish = Sebastes pinniger, China rockfish = Sebastes nebulosus, community ecology, Copper rockfish = Sebastes caurinus, eelgrass = Zostera marina, fishes, geographic distribution, habitats, human impacts, juvenile fish, life history information, Quillback rockfish = Sebastes maliger, temporal abundance, temporal distribution, Yaquina Bay, yellowtail rockfish = Sebastes flavidus}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/4m90f0201}, author = {Lindsley, Amy J} } @article {77266, title = {Resilience of Oregon Coastal Communities in Response to External Stressors}, year = {2016}, note = {Oregon{\textquoteright}s coastal communities have seen sweeping changes, from environmental conditions, to natural resource utilization, to economic and regulatory developments. {\textquotedblleft}This report tells the story of six Oregon coastal communities and how they have perceived and tried to respond to the myriad stressors they are experiencing. . . The results of this study provide a glimpse into the day-to-day, season-to-season struggles in these communities, and the array of responses, some effective and others not.{\textquotedblright} (p.1) Those who care about Oregon{\textquoteright}s coastal communities will find this report a valuable resource. {\textquotedblleft}A project submitted in partial fulfillment of the requirements for the degree of Master of Science (Natural Resources and Environment) at the University of Michigan{\textquotedblright} {\textquotedblleft}Client: Oregon Dept. of Fish and Wildlife{\textquotedblright}}, month = {2016, Aug}, pages = {236 p.}, institution = {University of Michigan. Dept. of Natural Resources and the Environment,}, keywords = {coastal hazards, commercial fisheries - groundfish, demographics, depleted populations, Depoe Bay (Or.), economics, environmental law and policy, Florence (Or.), Garibaldi (Or.), Gold Beach (Or.), human impacts, natural resource management, Newport (Or.), Port Orford (Or.), recreational fisheries - groundfish, salmon, shellfish, tourism}, url = {https://tinyurl.com/y5za7urw}, author = {Ackerman, Richard and Neuenfeldt, Rachel and Eggermont, Theo and Burbidge, Mike and Lehrman, Joanna and Wells, Nathan and Chen, Xi} } @article {77321, title = {Slow shell building, a possible trait for resistance to the effects of acute ocean acidification}, journal = {Limnology and Oceanography}, volume = {61}, year = {2016}, note = {Anthropogenic increases in carbon dioxide in the atmosphere have led to acidification of the oceans. More acidic ocean water profoundly affects development of shellfish, and has had a huge impact on shellfish growers in the Pacific Northwest. The Pacific oyster, which originates in Japan, and has historically been the most commonly grown species, seems to be particularly sensitive to ocean acidification. The native Olympia oyster has a different life history and a slower rate of development than the Pacific oyster. In this paper, the authors explore the process of slow shell-building in Olympia oysters in acidic waters and consider implications for potential resiliency in adverse environmental conditions in this and other shellfish species. }, month = {2016}, pages = {p.1969-1983}, keywords = {Yaquina Bay, Hatfield Marine Science Center, Oregon Oyster Farms, Netarts Bay, Whiskey Creek, Pacific oyster = Crassostrea gigas, Olympia oyster=Ostrea lurida (Ostrea conchaphila), aquaculture, molluscs, bivalves, oysters, ocean acidification, human imp}, doi = {doi: 10.1002/lno.10348}, author = {Waldbusser, George G. and Gray, Matthew W. and Hales, Burke and Langdon, Christopher J. and Haley, Brian A. and Gimenez, Iria and Smith, Stephanie R. and Brunner, Elizabeth L. and Hutchinson, Greg} } @article {83057, title = {Status of Oregon stocks of coho salmon}, volume = {no.OPSW-ODFW-2017-3}, year = {2016}, note = {Good statistics on coho runs. After 2016, this report{\textquoteright}s title changes to {\textquotedblleft}Western Oregon Adult Coho Salmon Spawning Survey Data Report.{\textquotedblright}}, month = {2016, Nov.}, pages = {48 p.}, institution = {Oregon Adult Salmonid Inventory \& Sampling Project, ODFW}, address = {Corvallis, Or.}, keywords = {abundance, Alsea River, Beaver Creek (Lincoln), Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, fecundity, Floras Lake, geographic distribution, hatchery salmonids, Necanicum River, Nehalem River, Nestucca River, North Umpqua River, Salmon River, Siletz River, Siltcoos Creek, Siuslaw River, Sixes River, South Umpqua River, Tahkenitch Creek, temporal distribution, Tenmile Creek, Tillamook Bay, Umpqua River, wild salmonids, Yaquina River}, url = {https://nrimp.dfw.state.or.us/DataClearinghouse/default.aspx?p=202\&XMLname=41722.xml}, author = {Sounhein, Briana and Brown, Eric and Lewis, Mark and Weeber, Matt} } @mastersthesis {77386, title = {Stranding Mortality Patterns in California Sea Lions and Steller Sea Lions in Oregon and Southern Washington, 2006 to 2014}, year = {2016}, note = {This thesis examines marine mammals found dead on the Oregon Coast from 2006-2014: where they were found, when they were found, and how they died. The author correlates animal deaths with climate conditions and human activities. Human beings were shown to cause far more deaths than disease or other causes. {\textquotedblleft}Spatial analysis shows that stranding hot spots occur near major coastal estuaries: the mouth of the Columbia River, Siletz Bay, Yaquina Bay, and Coos Bay (p.60).{\textquotedblright}}, pages = {72 p.}, school = {Portland State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {College of Liberal Arts and Sciences. Department of Biology}, address = {Portland, Or.}, keywords = {Columbia River, Tillamook Bay, Siletz Bay, Yaquina Bay, Coos Bay, Hatfield Marine Science Center, Harbor seal = Phoca vitulina, Steller sea lion = Eumetopias jubata, California sea lion = Zalophus californianus, commercial fisheries, human impacts}, url = {https://pdxscholar.library.pdx.edu/cgi/viewcontent.cgi?referer=\&httpsredir=1\&article=4011\&context=open_access_etds}, author = {Lee, Kessina} } @article {80486, title = {Salmonid life-cycle monitoring in western Oregon streams, 2012-2014}, volume = {no. OPSW-ODFW-2015-2}, year = {2015}, note = {Beginning in 1997, the Oregon Dept. of Fish and Wildlife began monitoring the migration and survival of salmonids. This publication gives data gathered by ODFW to estimate the abundance of adult salmonids, to estimate the number of juvenile salmonids migrating downstream, and to estimate the survival rates in marine and fresh waters for coho salmon. This report covers research done from 2012-2014 and gives excellent data for monitored basins.}, pages = {110 p.}, institution = {Oregon Dept. of Fish and Wildlife}, address = {Salem, Or.}, keywords = {Cascade Creek (Alsea), chum salmon = Oncorhynchus keta, Coho salmon = Oncorhynchus kisutch, cutthroat trout = Oncorhynchus clarki, depleted populations, EF Trask River, hatcheries{\textquotedblright}, hatchery salmonids, Mill Creek (Siletz), Mill Creek (Yaquina), NF Nehalem River, population count, steelhead trout = Oncorhynchus mykiss, West Fork Smith River (Umpqua), wild salmonids, Winchester Creek (Coos Bay), {\textquotedblright} {\textquotedblleft}Chinook salmon = Oncorhynchus tshawytscha}, url = {https://tinyurl.com/2p9fkj85}, author = {Suring, Erik and Burns, Patrick and Constable, Ronald J. Jr. and Lorion, Chris M. and Wiley, Derek J. and Oregon Dept. of Fish and Wildlife,} } @article {83056, title = {Status of Oregon stocks of coho almon, 2015}, volume = {no.OPSW-ODFW-2016-3}, year = {2015}, note = {Good statistics on coho runs.}, month = {2015, Oct.}, pages = {46 p.}, institution = {Oregon Adult Salmonid Inventory \& Sampling Project, ODFW}, address = {Corvallis, Or.}, keywords = {abundance, Alsea River, Beaver Creek (Lincoln), Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, fecundity, Floras Lake, geographic distribution, hatchery salmonids, Necanicum River, Nehalem River, Nestucca River, North Umpqua River, Salmon River, Siletz River, Siltcoos Creek, Siuslaw River, Sixes River, South Umpqua River, Tahkenitch Creek, temporal distribution, Tenmile Creek, Tillamook Bay, Umpqua River, wild salmonids, Yaquina River}, url = {https://nrimp.dfw.state.or.us/DataClearinghouse/default.aspx?p=202\&XMLname=41721.xml}, author = {Sounhein, Briana and Brown, Eric and Lewis, Mark and Weeber, Matt} } @article {77261, title = {A comparison of bulk estuarine turnover timescales to particle tracking timescales using a model of the Yaquina Bay Estuary}, journal = {Estuaries and Coasts}, volume = {38}, year = {2014}, note = {Water flows in and out of Oregon estuaries with the tides. The Oreon coast enjoys two high tides and two low tides daily. With new water coming in twice a day, and old water flowing out, how long does it take for the water in an estuary to be replaced by new seawater and freshwater inflow? In this technical paper, the authors compare different theoretical models of estuarine turnover with particle tracking methods. }, month = {2014}, pages = {p.1797-1814}, keywords = {hydrology, mathematical modeling, tides, Yaquina Bay, Yaquina River Estuary}, doi = {doi: 10.1007/s12237-014-9915-1}, author = {Lemagie, Emily P. and Lerczak, James A.} } @article {76271, title = {Intertidal habitat utilization patterns of birds in a Northeast Pacific estuary}, journal = {Wetlands Ecology and Management}, volume = {22}, year = {2014}, note = {The authors conducted bird censuses for five major habitats in the Yaquina River Estuary, {\textquotedblleft} Zostera marina (eelgrass), Upogebia (mud shrimp)/ mudflat, Neotrypaea (ghost shrimp)/ sandflat, Zostera japonica (Japanese eelgrass), and low marsh.{\textquotedblright} They studied spatial and temporal variation within habitats and found that the native eelgrass, Zostera marina, was {\textquotedblleft}an important habitat based on nearly all metrics of bird use{\textellipsis}{\textquotedblright} (from the Abstract) }, pages = {p.451{\textendash}466}, keywords = {birds, eelgrass = Zostera marina, geographical distribution, Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), Idaho Flat, Japanese eelgrass = Zostera japonica, Mud shrimp = Upogebia pugettensis, population count, Raccoon Flat, Sally{\textquoteright}s Bend, temporal distribution, Yaquina Bay}, doi = {10.1007/s11273-014-9346-6}, author = {Frazier, Melanie R.. and Lamberson, Janet O. and Nelson, Walter G.} } @article {76436, title = {Nursery Functions of U.S. West Coast Estuaries: The State of Knowledge for Juveniles of Focal Invertebrate and Fish Species}, year = {2014}, note = {This report summarizes what is known about the role of estuaries as nurseries for important aquatic species. The authors inventoried 303 West Coast estuaries and categorized each by class (lagoonal, riverine, embayment and sound) and subclass (estuarine coastal subtidal, tidal channel/creek, slough and lagoon). They examined 15 different species that used estuaries and noted what is known and not known about their life cycles and use of estuaries. {\textquotedblleft}Together with the estuary inventory and the geodatabase, this report represents the first stage in a larger effort to better understand the nursery functions of West Coast estuaries for fish and invertebrates.{\textquotedblright} (p.3)}, pages = {168 p.}, institution = {The Nature Conservancy}, address = {Arlington, Va.}, keywords = {aquatic invertebrates, Bat stingray = Myliobatus californicus (Aetobatus californicus), Bay shrimp = Crangon franciscorum, Brown rockfish = Sebastes auriculatus, California halibut = Paralichthys californicus, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, crustaceans, Dungeness crab = Metacarcinus magister (Cancer magister), eelgrass = Zostera marina, English sole = Parophrys vetulus, estuaries, fishes, general, geographic distribution, Green sturgeon = Acipenser medirostris, habitats, juvenile fish, Leopard shark = Triakis semifasciata, life history information, Oregon, Pacific Coast, Pacific herring = Clupea pallasi, Pacific staghorn sculpin = Leptocottus armatus, Shiner perch = Cymatogaster aggregate, Starry flounder = Platichthys stellatus, steelhead trout = Oncorhynchus mykiss}, url = {https://www.scienceforconservation.org/products/nursery-functions-of-estuaries}, author = {Hughes, Brent B. and Levey, Matthew D. and Brown, Jennifer A. and Fountain, Monique C. and Carlisle, Aaron B. and Litvin, Steven Y. and Greene, Correigh M. and Heady, Walter N. and Gleason, Mary G.} } @mastersthesis {54796, title = {Recovery of Oregon Coast Coho Salmon (Onchorhynchus kitsutch) through Restoration of Freshwater Habitats}, year = {2014}, note = {Millions of dollars have been spent in enhancing habitats to aid recovering populations of salmon on the Oregon Coast. How well have enhancement projects done? Does there seem to be a relationship between restoration projects and salmon recovery? The author addresses these questions. {\textquotedblright}My analysis showed that from 1994 to 2012 only 3 of the 21 independent populations from the ESU, the Alsea, Salmon, and Tillamook had statistically significant recovery. To evaluate the relationship between habitat restoration and coho recovery, I ran a correlation between the rate of recovery and the amount spent on restoration for each ESU population. The rate of recovery increased as total dollars spent on restoration increased, but it was a very weak relationship{\textellipsis}{\textquotedblright} (from the Abstract) The author concludes by suggesting ways to improve restoration efforts. }, pages = {65 p.}, school = {University of San Francisco}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Environmental Management}, address = {San Francisco, Cal.}, keywords = {Alsea River, Beaver Creek, Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, Floras River, habitat restoration, habitats, hatcheries, hatchery salmonids, natural resource management, Necanicum River, Nehalem River, Nestucca River, North Umpqua River, nutrients, Salmon River, sediments, Siletz River, Siltcoos Creek, Siuslaw River, Sixes River, South Umpqua River, Tahkenitch Creek, Tillamook Bay, Umpqua River, water quality, water temperature, Yaquina River}, url = {https://repository.usfca.edu/cgi/viewcontent.cgi?referer=\&httpsredir=1\&article=1014\&context=capstone}, author = {Lutz, Andrew P.} } @article {76376, title = {Sea Level Affecting Marshes Model (SLAMM)}, year = {2014}, note = {This is a technical document discussing how to use a computer program to model the effects of sea-level rise on native seagrass. {\textquotedblleft}Because of the ecological importance of SAV [submerged aquatic vegetation] habitats, U.S. EPA, USGS, and USDA partnered with Warren Pinnacle Consulting to enhance the SLAMM modeling software to include new functionality in order to predict changes in Zostera marina distribution within Pacific Northwest estuaries in response to sea level rise.{\textquotedblright} (from the Introduction) The Yaquina River estuary and Willapa Bay are used as examples. While the emphasis of the document is on GIS, there are some good maps of Yaquina Bay. Clearly, a sea-level rise would have an impact on native seagrass distribution, with Zostera present in fewer areas. The latest version of the tool can be found at: https://coast.noaa.gov/digitalcoast/tools/slamm.html . }, pages = {50 p.}, address = {Newport, Or.}, keywords = {aquatic vegetation, bathymetry, climate change, eelgrass = Zostera marina, geographic information system, salt marsh, sea level, topography, Willapa Bay, Yaquina Bay}, url = {https://warrenpinnacle.com/prof/SLAMM6/SLAMM_6.3_final_release.pdf}, author = {Lee II, Henry and Reusser, Deborah A. and Frazier, Melanie R.. and McCoy, Lee M. and Patrick J Clinton and Clough, Jonathan S. and U.S. Environmental Protection Agency. National Health and Environmental Effects Research Laboratory. Office of Research and Development. Western Ecology Division,} } @article {76731, title = {Status of Oregon stocks of coho salmon, 2013}, volume = {no.OPSW-ODFW-2014-3}, year = {2014}, note = {Good statistics on coho runs.}, pages = {55 p.}, institution = {Oregon Adult Salmonid Inventory \& Sampling Project, ODFW}, address = {Corvallis, Or.}, keywords = {abundance, Alsea River, Beaver Creek, Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, Floras Lake, geographic distribution, hatchery salmonids, Necanicum River, Nehalem River, Nestucca River, Salmon River, Siletz River, Siltcoos Creek, Siuslaw River, Sixes River, Tahkenitch Creek, temporal distribution, Tenmile Creek, Tillamook Bay, Umpqua River, wild salmonids, Yaquina River}, url = {https://library.state.or.us/repository/2012/201210151135331/2013.pdf}, author = {Sounhein, Briana and Brown, Eric and Lewis, Mark and Weeber, Matt} } @article {76341, title = {Temporal trends and spatial distribution of DDT in bivalves from the coastal marine environments of the continental United States, 1986{\textendash}2009}, journal = {Marine Pollution Bulletin}, volume = {81}, year = {2014}, note = {{\textquotedblleft}While the use of DDT in the United States was banned or rigorously restricted forty years ago, this compound and breakdown products continue to be available to bivalves at virtually every location in the continental U.S. coastal areas sampled during the NOAA{\textquoteright}s NS\&T {\textquotedblleft}Mussel Watch{\textquotedblright} Program. The concentration in the coastal areas, as a whole, is decreasing with a half-life of about 10{\textendash}14 years; faster in the south, slower in the north. Under these dissipation rates, average concentrations along the East, Gulf, and West coasts will decrease below 10\% of today{\textquoteright}s concentrations by approximately 2050.{\textquotedblright} (p.315) The Oregon sites showed relatively low levels of ΣDDT (below the national 15th percentile) (p.315).}, month = {2014, Apr 30}, pages = {p.303-316}, keywords = {aquatic invertebrates, bivalves, Coos Bay, DDE, DDT, Fogarty Creek, molluscs, pesticides, pollution, Russell Point, Yaquina Bay}, doi = {10.1016/j.marpolbul.2013.12.049}, author = {Sericano, Jos{\'e} L. and Wade, Terry L. and Sweet, Stephen T. and Ramirez, Juan and Lauenstein, Gunnar G.} } @mastersthesis {51456, title = {Characterization of Ecosystem Structure and Function Recovery within the NOAA MOC-P Mitigation Basin, Newport, Oregon}, year = {2013}, note = { The native seagrass Zostera marina plays a vital role in Oregon estuaries, producing oxygen and organic matter, trapping sediment, offering forage to waterfowl and giving shelter and habitat to many species. When the NOAA Marine Operations Center {\textendash} Pacific (MOC-P) was moved to Newport, it was necessary to dredge the bay to put in new docks for NOAA research vessels. In the process, a .68 acre eelgrass bed was destroyed. To mitigate this damage, the original eelgrass was replanted in a new site, in an attempt to re-establish the bed nearby. In this thesis, the author compares the new site to two nearby reference sites, noting ecological diversity, sediments and species abundance through the year. {\textquotedblleft}The re-planted eelgrass bed within the NOAA MOC-P mitigation area was not observed to be a failed ecosystem during this study, but rather an expanding eelgrass bed that was adequately performing the functions associated with eelgrass ecosystems in the Pacific Northwest.{\textquotedblright} (from the Abstract). Nicely written. The major professor was Sarah K. Henkel.}, pages = {83 p,}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {College of Earth, Ocean, and Atmospheric Sciences. Marine Resource Management}, address = {Corvallis, Or.}, keywords = {ecosystem health, eelgrass = Zostera marina, general ecosystem description, geographic distribution, Hatfield Marine Science Center, mitigation, Port of Newport, sediments, species composition, species list, temporal distribution, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/v118rh33k}, author = {Lewis, Nate S.} } @mastersthesis {51461, title = {Cost-Efficient Management of Aquatic Invasive Species: Application to New Zealand Mudsnails in the Pacific Northwest}, year = {2013}, note = {The New Zealand mud snail, a destructive invasive species, has been found in the Wilson, Trask, Nestucca, Siletz, Yaquina, Alsea, Siuslaw, Umpqua and Coos Rivers. Based on the animal{\textquoteright}s biology, Siltcoos Lake is threatened. The snail is a bio-fouling organism that blocks water intake pipes, and threatens aquatic industries and tools from boat motors to hydroelectric plants. In this dissertation, the author assesses possible ways of managing this invasion, and assesses the costs of different management strategies. Major professor was Munisamy Gopinath.}, pages = {115 p.}, school = {Oregon State University}, type = {Doctoral dissertation}, edition = {Ph. D.}, chapter = {Dept. of Applied Economics}, address = {Corvallis, Or.}, keywords = {Alsea River, Coos River, economics, gastropods, introduced species, molluscs, Nestucca River, New Zealand mud snail = Potamopyrgus antipodarum, Siletz River, Siltcoos Lake, Siuslaw River, theses, Trask River, Umpqua River, Wilson River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/fb494c75t}, author = {Lim, Youngah} } @inbook {54806, title = {Ecosystem components, protected species {\textendash} salmon: Chinook and coho salmon}, booktitle = {Integrated Ecosystem Assessment of the California Current. Phase II Report 2012. }, year = {2013}, note = {The is a broad assessment of population trends for salmon populations in California, Oregon, Washington, and the Snake River salmon. Geographic areas are addressed broadly and data for specific streams is not delineated. In general, Oregon coast salmon populations were seen as having swings in abundance from year to year, but were broadly stable.}, pages = {p.244-294}, publisher = {U.S. National Oceanographic and Atmospheric Administration. National Marine Fisheries Service,}, organization = {U.S. National Oceanographic and Atmospheric Administration. National Marine Fisheries Service,}, keywords = {abundance, Alsea River, Beaver Creek, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, Coos River, Coquille River, depleted populations, fecundity, Floras, Necanicum River, Nehalem River, Nestucca River, New River, Salmon River, Siletz River, Siltcoos Lake, Siuslaw River, Sixes River, Tahkenitch Creek, Tenmile Lake, Tillamook Bay, Umpqua River, Yaquina River}, url = {https://swfsc-publications.fisheries.noaa.gov/publications/CR/2013/2013Levin.pdf}, author = {Wainwright, Thomas C. and Williams, Thomas H. and Fresh, Kurt L. and Wells, Brian K. and Levin, P.S. and Wells, B.K. and Sheer, M.B.} } @article {51351, title = {Geographic range and structure of cryptic genetic diversity among Pacific North American populations of the non-native amphipod Grandidierella japonica}, journal = {Biological Invasions}, volume = {15}, year = {2013}, note = {In this article, the authors attempt to reconstruct the invasion history of the introduced amphipod Gradidierella japonica. DNA analysis shows two distinct groups {\textendash} one from San Francisco south, and the other north of San Francisco. There are significant genetic differences between the two groups, which, coupled with low genetic diversity within each group, suggests that there were two separate introductions of this species to the West Coast.}, month = {2013}, pages = {p.2415{\textendash}2428}, keywords = {amphipods, Columbia River estuary, Coos Bay, crustaceans, genetics, Grandidierella japonica, introduced species, Puget Sound, San Francisco Bay, Umpqua River estuary, Winchester Bay, Yaquina Bay}, doi = {10.1007/s10530-013-0462-7}, author = {Pilgrim, Erik M. and Blum, Michael J. and Reusser, Deborah A. and Lee II, Henry and Darling, John A.} } @article {77361, title = {NorWeST Stream Temp: Regional Database and Modeled Stream Temperatures [web page]}, year = {2013}, note = {This website gives water temperature data coupled with climate scenarios for western U.S. streams. Hundreds of biologists and hydrologists contributed to the temperature database. The database contains over 200,000,000 hourly stream temperature readings at more than 20,000 stream sites. The data were used to develop 36 historical and future climate scenarios at 1-kilometer resolution for over 1,000,000 stream kilometers. The website includes an interactive stream temperature viewer.}, publisher = {U.S. Rocky Mountain Research Station. Air, Water \& Aquatic Environments Program}, keywords = {Oregon, Pacific Northwest, Pacific Southwest, Intermountain West, water temperature, climate, environmental monitoring, mathematical modeling}, url = {https://www.fs.usda.gov/rm/boise/AWAE/projects/NorWeST.html}, author = {Isaak, D. J. and Wenger, S. J. and Peterson, E. E. and Ver Hoef, J. M. and Hostetler, S. and Luce, C. H. and Dunham, J. B. and Kershner, J. and Roper, B. B. and Nagel, D. and Horan, D. and Chandler, G. and Parkes, S. and Wollrab, S. and U.S. Rocky Mountain Research Station. Air Water \& Aquatic Environments Program} } @article {51391, title = {Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific}, volume = {EPA/600/R/12/631}, year = {2012}, note = {{\textquotedblleft}The Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific {\textellipsis} provides maps of native and invaded ecoregions for all the reported marine/estuarine nonindigenous species (NIS) in the North Pacific, exclusive of marsh plants. Additionally, environmental and habitat information for each species is summarized in two-page species profiles, along with an analyses of the extent of invasion at the ecoregion and regional scales across the six North Pacific Marine Science Organization (PICES) member countries (United States, Canada, Russia, Japan, Korea, and China). The information in the NIS Atlas is from the PICES Nonindigenous Species Information System.{\textquotedblright} (from publisher{\textquoteright}s website) {\textquotedblleft}With Contributions by Katie Marko, Emily Saarinen, Tad Larsen, Caroline Emch-Wei, Meredith Payne, and PICES WG21 members{\textquotedblright} (from title page)}, pages = {1,943 p.}, institution = {National Health and Environmental Effects Research Laboratory. Office of Research and Development,}, keywords = {algae, annelids, arthropods, bryozoans, ciliates, cnidarian, crustaceans, ctenophores, diatoms, dinoflagellates, echinoderms, fishes, flatworms, foraminifera, fungi, habitats, introduced species, life history information, molluscs, nematodes, Oregon, Pacific Northwest, polychaete worms, sponges, terrestrial vegetation, tunicates}, url = {https://tinyurl.com/ywb357p2}, author = {Lee II, Henry and Reusser, Deborah A.} } @article {34556, title = {Determining bathymetric distributions of the eelgrass Zostera marina L. in three turbid estuaries on the eastern North Pacific coast}, journal = {Botanica Marina}, volume = {55}, number = {3}, year = {2012}, note = {This paper describes a method for mapping estuarine eelgrass beds that can be applied to other subsurface aquatic vegetation, and to give a method for estimating the part of the eelgrass that is too deep to be detected by this method. Bathymetric models of three estuaries were made and then compared with eelgrass distribution. }, pages = {p.229-240}, keywords = {Alsea Bay, aquatic vegetation, eelgrass = Zostera marina, map, spatial distribution, temporal abundance, Tillamook Bay, Yaquina Bay}, doi = {10.1515/bot-2011-0011}, author = {Young, David R. and Clinton, Patrick J. and Specht, David T. and Collura, Chris Mochon and Lee II, Henry} } @article {80481, title = {Salmonid life-cycle monitoring in western Oregon streams, 2009-2011}, volume = {no.OPSW-ODFW-2011-2}, year = {2012}, note = {Beginning in 1997, the Oregon Dept. of Fish and Wildlife began monitoring the migration and survival of salmonids. This publication gives data gathered by ODFW to estimate the abundance of adult salmonids, to estimate the number of juvenile salmonids migrating downstream, and to estimate the survival rates in marine and fresh waters for coho salmon. This report covers research done from 1997-2011 and gives excellent data for monitored basins.}, month = {2012, Mar.}, pages = {113 p.}, address = {Salem, Or.}, keywords = {Cascade Creek (Alsea), chum salmon = Oncorhynchus keta, Coho salmon = Oncorhynchus kisutch, cutthroat trout = Oncorhynchus clarki, depleted populations, EF Trask River, hatcheries{\textquotedblright}, hatchery salmonids, Mill Creek (Siletz), Mill Creek (Yaquina), NF Nehalem River, population count, steelhead trout = Oncorhynchus mykiss, West Fork Smith River (Umpqua), wild salmonids, Winchester Creek (Coos Bay), {\textquotedblright} {\textquotedblleft}Chinook salmon = Oncorhynchus tshawytscha}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A45171 }, author = {Suring, Erik and Constable, Ronald J. Jr. and Lorion, Chris M. and Miller, Bruce A. and Wiley, Derek J. and Oregon Dept. of Fish and Wildlife,} } @article {34466, title = {Utilization Patterns of Intertidal Habitats by Birds in Yaquina Estuary, Oregon}, volume = {EPA/600/R-11/118}, year = {2011}, note = {"An assessment of bird utilization patterns of the intertidal soft sediment and low marsh habitats of the Yaquina estuary, Oregon was conducted from December 2007-November 2008. . . Gulls and terns comprised 42\% of the total birds and, together with ducks, shorebirds, corvids and geese, accounted for about 92\% of the total abundance. The addition of herons/egrets, rails (i.e. coots), and pelicans/cormorants comprised just over 98\% of all birds observed. The remaining birds consisted of songbirds, loons/grebes, raptors and alcids." (p.3)}, month = {2011, Oct.}, pages = {81 p.}, address = {Newport, Or.}, keywords = {American crow = Corvus brachyrhynchos, American wigeon = Anas Americana, birds, Boone Slough, Bufflehead = Bucephala albeola, Coquille Point, Criteser{\textquoteright}s Marina, eelgrass = Zostera marina, ghost shrimp = Neotrypaea californiensis, Grassy Point, Great blue heron = Ardea herodias, gulls = Larus species, habitats, Idaho Flats, Japanese eelgrass = Zostera japonica, Johnson Slough, King Slough, Mud shrimp = Upogebia pugettensis, Northern pintail = Anas acuta, Nute Slough, Oneatta Point, River Mile 7, River Mile 8, Sally{\textquoteright}s Bend, scaup = Aythya species, The Bend, tidal marsh, western sandpiper = Calidris mauri, Winant, Yaquina, Yaquina Bay, Yaquina River}, url = {https://cfpub.epa.gov/si/si_public_file_download.cfm?p_download_id=503895\&Lab=NHEERL}, author = {Lamberson, Janet O. and Frazier, Melanie R.. and Nelson, Walter G. and Patrick J Clinton and U.S. Environmental Protection Agency. Western Ecology Division,} } @article {34411, title = {Biological Assessment and Essential Fish Habitat Assessment for the Construction of NOAA{\textquoteright}s Marine Operations Center-Pacific in Newport, Oregon (Township 11 South, Range 11 West, and Section 17 6th field HUC 171002040303)}, year = {2010}, note = {"This is a Biological Assessment (BA) addressing the potential effects on aquatic species currently listed or proposed for listing under the Federal Endangered Species Act (ESA) from the construction of the National Oceanic and Atmospheric Administration{\textquoteright}s (NOAA) Marine Operations Center {\textendash} Pacific (MOC-P) in Newport, Oregon." (from the Introduction) Includes maps, charts, aerial photographs, colored illustrations, architectural drawings and construction schematics.}, month = {2010, Jun. 2}, pages = {643 p.}, institution = {Pacific Habitat Services, Inc.}, address = {Wilsonville, Or.}, keywords = {Coho salmon = Oncorhynchus kisutch, depleted populations, dredging, eelgrass = Zostera marina, Green sturgeon = Acipenser medirostris, habitats, Hatfield Marine Science Center, human impacts, introduced species, killer whale = Orca orcinus, life history information, mitigation, NOAA Marine Opeations Center - Pacific, Pacific smelt = Thaleichthys pacificus, salinity, sediments, Steller sea lion=Eumetopias jubatus, water quality, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/t722h939f}, author = {van Staveren, John and Hawkins, Amy and Tumer, Craig and Groff, Dale and Lomnicky, Gregg and Pacific Habitat Services Inc.,} } @inbook {51326, title = {Impacts of climate change on Oregon{\textquoteright}s coasts and estuaries}, booktitle = {Oregon Climate Assessment Report}, year = {2010}, note = {This is Chapter 6 of the Oregon Climate Assessment Report. Predicts {\textquotedblleft}Increased winter{\textendash}early spring flow of coastal rivers and creeks and reduced flow during summer{\textquotedblright} for the Umpqua River (p.242)}, pages = {p.211-268}, publisher = {Oregon State University. College of Oceanic and Atmospheric Sciences. Oregon Climate Change Research Institute,}, organization = {Oregon State University. College of Oceanic and Atmospheric Sciences. Oregon Climate Change Research Institute,}, address = {Corvallis, Or.}, keywords = {Alsea Bay, Alsea Spit, bacteria, Bayocean Spit, climate change, climate precipitation, coastal hazards, Columbia River estuary, Coos Bay, dissolved oxygen, El Nino, erosion, estuaries, geology, landslides, Nehalem Bay, Nehalem Spit, Neskowin (Or.), Netarts Bay, ocean acidification, Rockaway Beach, salinity, Salmon River Estuary, sea level, Siletz Bay, Tillamook Bay, water temperature, wave heights, Yachats River, Yaquina Bay}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A637577}, author = {Ruggiero, Peter and Brown, Cheryl A. and Komar, Paul D. and Allan, Jonathan C. and Reusser, Deborah A. and Lee II, Henry}, editor = {Dello, Kathie and Mote, Philip W.} } @article {34356, title = {Rupture area and displacement of past Cascadia great earthquakes from coastal coseismic subsidence}, journal = {Geological Society of America Bulletin.}, volume = {122}, number = {11-12}, year = {2010}, pages = {p.2079-2096}, keywords = {Alsea Bay, Coos Bay, Coquille River, earthquakes, geology, Necanicum River, Nehalem River, Nestucca Bay, Netarts Bay, Salmon River, sediments, Siletz Bay, Siuslaw River, Sixes River, Tillamook Bay, tsunamis, Umpqua River, Yaquina Bay}, doi = {10.1130/B30108.1}, author = {Leonard, Lucinda J. and Currie, Claire A. and Mazzotti, Stephane and Hyndman, Roy D.} } @article {34286, title = {Classification of Regional Patterns of Environmental Drivers and Benthic Habitats in Pacific Northwest Estuaries}, volume = {EPA 600/R-09/140}, year = {2009}, note = {"This report describes a pilot effort at classifying PNW estuaries with regards to landscape attributes and their susceptibility to nutrient enrichment." Much data is presented. Although the report focuses on seven estuaries (Alsea, Coos Bay, Nestucca, Salmon River, Tillamook Bay, Umpqua and Yaquina), many other estuaries are mentioned, and basic statistical data is given for all PNW estuaries.}, keywords = {Alsea Bay, climate, Coos Bay, demographics, eelgrass = Zostera marina, Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), hydrography, hydrology, Japanese eelgrass = Zostera japonica, Mud shrimp = Upogebia pugettensis, Nestucca River estuary, nitrate-nitrite, nitrogen, phosphorus, phytoplankton, precipitation, salinity, Salmon River Estuary, sediment data, tidal currents, Tillamook Bay, turbidity, Umpqua River estuary, Yaquina Bay}, url = {https://tinyurl.com/3rd376k}, author = {National Health and Environmental Effects Research Laboratory (U.S.). Western Ecology Division,}, editor = {Lee II, Henry and Brown, Cheryl A.} } @article {49761, title = {Conserved Lands of Yaquina Bay [cartographic material]}, year = {2009}, note = {Overlay on aerial photograph. {\textquotedblleft}The Lincoln County Soil and Water Conservation District produced this map to illustrate existing conservation easements as of 2009. The largest ownerships on the map are 8000 acres owned by Pacific Forest Trust and being managed for older forest conditions with revenue generation from thinning and selective logging, the Van Eck Trust Lands, and land owned by The Wetlands Conservancy. The Central Coast Land Conservancy owns two parcels and 2 conservation easements.{\textquotedblright} (Abstract) }, publisher = {Lincoln Soil \& Water Conservation District}, address = {Newport, Or.}, keywords = {land ownership, maps, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/3197xm526}, author = {Lincoln Soil \& Water Conservation District,} } @article {36356, title = {Lincoln County: Multi-Jurisdictional Natural Hazards Mitigation Plan}, year = {2009}, note = {{\textquotedblleft}Prepared for: Lincoln County, Depoe Bay, Lincoln City, Newport, Siletz, Toledo, Waldport and Yachats{\textquotedblright} Maps, charts, tables, appendices. {\textquotedblleft}This natural hazard mitigation plan is intended to assist Lincoln County, Lincoln City, Depoe Bay, Newport, Toledo, Waldport and Yachats to reduce the risk from natural hazards by identifying resources, information, and strategies for risk reduction. It will also help guide and coordinate mitigation activities throughout the County.{\textquotedblright} (p.4)}, pages = {501 p.}, keywords = {climate, coastal hazards, Depoe Bay (Or.), earthquakes, environmental policy and law, erosion, flooding, forest fires, landslides, Lincoln City (Or.), Lincoln County (Or.), Newport (Or.), planning, precipitation, Siletz (Or.), Toledo (Or.), tsunamis, Waldport (Or.), weather, wind, Yachats (Or.)}, url = {https://scholarsbank.uoregon.edu/xmlui/handle/1794/9439}, author = {Lincoln County (Or.). Dept. of Planning and Development, and University of Oregon. Community Service Center, and Oregon Partnership for Disaster Resilience,} } @book {34246, title = {Biological recovery criteria for the Oregon Coast coho salmon evolutionarily significant unit}, series = {NOAA Technical Memorandum NMFS-NWFSC}, volume = {no.91}, year = {2008}, month = {2008}, pages = {199 p.}, publisher = {U.S. National Marine Fisheries Service, Northwest Fisheries Science Center}, organization = {U.S. National Marine Fisheries Service, Northwest Fisheries Science Center}, address = {[Seattle, Wa.]}, keywords = {Alsea River, Beaver Creek, Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, depleted populations, Floras Lake, Lower Umpqua River, Middle Umpqua River, Necanicum River, Nehalem River, Nestucca River, North Umpqua River, population biology, population count, Salmon River, Siletz River, Siltcoos Creek, Siuslaw River, Sixes River, South Umpqua River, statistical analysis, Tahkenitch Creek, Tenmile Creek, Tillamook Bay, Yaquina River}, url = {https://repository.library.noaa.gov/view/noaa/3577}, author = {Wainwright, Thomas C. and Chilcote, Mark W. and Lawson, Peter W. and Nickelson, Thomas E. and Huntington, Charles W. and Mills, Justin S. and Moore, Kelly M. S. and Reeves, Gordon H. and Stout, Heather A. and Weitkamp, Laurie A.} } @inbook {34236, title = {A fishermen{\textquoteright}s agreement and co-op in Yaquina Bay roe herring}, booktitle = {Case Studies in Fisheries Self-Governance}, series = {FAO Fisheries Technical Paper}, volume = {no.504}, year = {2008}, note = {This paper describes a private agreement between fishermen participating in a limited-entry commercial fishery for herring roe in Yaquina Bay. The co-operative formed by this agreement gives the fishermen greater flexibility, allowing them to fish when roe is likely to likely to be more abundnat, and the agreement "has proven resilient to widely fluctuating resource and market conditions..." (p.422) Map, tables. Gives statistics for herring landings in Yaquina Bay from 1978-2006.}, pages = {p.415-423}, publisher = {Food and Agriculture Organization of the United Nations}, organization = {Food and Agriculture Organization of the United Nations}, address = {Rome, Italy}, keywords = {abundance, commercial fisheries, depleted populations, economics, fecundity, Pacific herring = Clupea pallasi, Yaquina Bay}, url = {https://www.fao.org/3/a1497e/a1497e00.htm}, author = {Leal, D. R.}, editor = {Townsend, R. and Shotton, R. and Uchida, H. (eds.)} } @book {34161, title = {Identification of historical populations of Coho salmon (Oncorhynchus kisutch) in the Oregon coast evolutionarily significant unit}, series = {NOAA Technical Memorandum NMFS-NWFSC}, volume = {no.79}, year = {2007}, note = {Important report on coho stocks and their genetic relationships.}, month = {2007, Jan.}, pages = {129 p.}, publisher = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service}, organization = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service}, address = {[Seattle, Wash.]}, keywords = {abundance, Alsea Basin, aquatic vegetation, Beaver Creek, biological, Coho salmon = Oncorhynchus kitsutch, commercial fisheries - salmon, Coos Bay, Coquille River, depleted populations, Devil{\textquoteright}s Lake, general ecosystem description, human impacts, hydrology, natural resource management, Necanicum Bay, Nehalem Bay, Nestucca River estuary, Netarts Bay, recreational fisheries - salmon, Salmon River, Sand Lake, Siletz River, Siltcoos Creek, Siuslaw River, Sixes River, Tahkenitch Creek, Tenmile Creek, terrestrial vegetation, Tillamook Bay, Umpqua River Basin, Yaquina River Basin}, url = {https://www.arlis.org/docs/vol1/123357711.pdf}, author = {Lawson, Peter W. and Bjorkstedt, Eric P. and Chilcote, Mark W. and Huntingdon, Charles W. and Mills, Justin S. and Moore, Kelly M. S. and Nickelson, Thomas E. and Reeves, Gordon H. and Stout, Heather A. and Wainwright, Thomas C. and Weitkamp, Laurie A.} } @article {34081, title = {Effect of dietary restriction during juvenile development on adult performance of Pacific oysters (Crassostrea gigas)}, journal = {Aquaculture}, volume = {259}, number = {1-4}, year = {2006}, month = {2006}, pages = {124-137}, keywords = {aquaculture, biological, diet, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas}, isbn = {0044-8486}, doi = {10.1016/j.aquaculture.2006.05.035}, author = {Evans, Sanford and Langdon, Christopher J.} } @article {26421, title = {Estimating the size of historical Oregon salmon runs}, journal = {Reviews in Fisheries Science}, volume = {13}, number = {1}, year = {2006}, note = {"Compared to our estimates of mid-1800s coho salmon levels, early 2000 runs (during favorable ocean conditions), were 11-19\% of the historical level. During poor ocean conditions (1990s), current coho salmon runs were 3-6\% of the historical size." (from the Abstract)}, pages = {p.51-66}, keywords = {abundance, Alsea River, archeology, commercial fisheries - salmon, Coos Bay, Coquille River, dams, depleted populations, hatchery salmonids, historical, industrial development, logging, mining, Nehalem River, Nestucca River, population biology, Rogue River, Siletz River, Siuslaw River, statistical analyses, Umpqua River, wild salmonids, Wilson River, Yaquina River}, doi = {10.1080/10641260590921509}, author = {Meengs, Chad C. and Lackey, Robert T.} } @article {83007, title = {Pacific Northwest Coast Ecoregional Assessment}, year = {2006}, note = {{\textquotedblleft}Prepared by The Nature Conservancy, the Nature Conservancy of Canada, and the Washington Department of Fish and Wildlife.{\textquotedblright} This is a very broad ecological assessment for the Pacific Northwest: British Columbia, Washington and Oregon. {\textquotedblleft}The purpose of the Pacific Northwest Coast ecoregional conservation assessment was to identify an efficient suite of conservation sites that will contribute toward the long-term survival of all viable native plant and animal species and natural communities in the ecoregion.{\textquotedblright} (p.ix) This document is accompanied by appendices indicating sites of interest. V.1 - main report, v.2 - appendices, v.3 - maps. Appendices: https://ir.library.oregonstate.edu/concern/defaults/sb397d851 Maps: https://ir.library.oregonstate.edu/concern/defaults/v692tc30m}, pages = {129 p.}, institution = {The Nature Conservancy}, address = {Portland, Or.}, keywords = {climate, depleted populations, ecosystem health, ecosystem modeling, general, habitats, human impacts}, url = {https://ir.library.oregonstate.edu/concern/defaults/8g84mr696}, author = {VanderSchaaf, Dick and Wilhere, George and Ferdana, Zack and Popper, Ken and Schindel, Michael and Skidmore, Peter and Rolph, Dave and Lachetti, Pierre and Kittel, Gwen and Crawford, Rex and Pickering, Debbie and Christy, John A.} } @article {33996, title = {Direct and correlated responses to selection for adult body weight in Pacific oysters}, journal = {Journal of Shellfish Research}, volume = {24}, number = {2}, year = {2005}, month = {2005}, pages = {653}, keywords = {aquaculture, biological, genetics, Idaho Flats, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas}, author = {Evans, Ford and Langdon, Christopher J.} } @article {34041, title = {Toxicity and fate of two munitions constituents in spiked sediment exposures with the marine amphipod Eohaustorius estuarius}, journal = {Environmental Toxicology and Chemistry}, volume = {24}, number = {11}, year = {2005}, month = {2005}, pages = {2887-2897}, keywords = {amphipods, biological, Eohaustorius species, Idaho Flats, RDX, sediments, TNT, toxicity}, doi = {10.1897/04-611R.1}, author = {Rosen, G. and Lotufo, G.R.} } @article {33976, title = {Wetland Profiles of Oregon{\textquoteright}s Coastal Watersheds and Estuaries: Part 3 of a Hydrogeomorphic Guidebook. Report to Coos Watershed Association, US Environmental Protection Agency, and Oregon Depart. of State Lands, Salem.}, year = {2005}, note = {Bibliography is with the 2nd volume of this handbook, "Oregon Tidal Wetland Functions Literature Review \& Data." This volume summarizes the state of tidal and non-tidal wetlands on the Oregon Coast. Looks at potential stressors, water quality. Gives detailed descriptions of 6 wetlands in the Yaquina River Estuary. The wetlands were assessed in 2003. About 18\% of the Yaquina Estuary is tidal wetland. }, pages = {89 p.}, keywords = {aquatic invertebrates, aquatic vegetation, birds, estuarine dynamics, flooding, Hatfield Marine Science Center, human impacts, salinity, sediments, species list, statistics, terrestrial mammals, tidal processes, water quality, wetland delineation, wetland vegetation, Yaquina River Estuary}, url = {https://www.oregon.gov/dsl/WW/Documents/tidal_HGM_pt3.pdf}, author = {Adamus, Paul R. and Larsen, Jennifer and Scranton, Russell} } @article {33941, title = {Genetic population structure of central Oregon Coast coho salmon (Oncorhynchus kisutch)}, journal = {Conservation Genetics}, volume = {5}, number = {6}, year = {2004}, note = {The "Alsea complex" includes the Alsea, Siletz and Yaquina Rivers, along with Devil Creek and Beaver Creek. These coho populations are closely related.}, pages = {p.797-812}, keywords = {Coho salmon = Oncorhynchus kisutch}, doi = {10.1007/s10592-004-1983-5}, author = {Ford, Michael J. and Teel, David J. and Van Doornik, Donald M. and Kuligowski, David and Lawson, Peter W.} } @article {33946, title = {Particle removal rates by the mud shrimp Upogebia pugettensis, its burrow, and a commensal clam: effects on estuarine phytoplankton abundance}, journal = {Marine Ecology Progress Series}, volume = {269}, year = {2004}, month = {Mar 25_2004}, pages = {223-236}, keywords = {biological, blue mud shrimp=Upogebia pugettensis, feeding behavior, Oregon State University Hatfield Marine Science Center}, doi = {10.3354/meps269223}, url = {https://www.int-res.com/articles/meps2004/269/m269p223.pdf}, author = {Griffen, B.D. and DeWitt, Theodore H. and Langdon, Christopher J.} } @article {33926, title = {Survey of pathogens in juvenile salmon Oncorhynchus spp. migrating through Pacific Northwest estuaries}, journal = {Journal of Aquatic Animal Health}, volume = {16}, number = {4}, year = {2004}, note = {Tracks selected pathogens in Chinook and coho salmon in Pacific Northwest estuaries from 1996-2001. Gives percentages of infected fish found in estuaries. Suggests role disease may play in salmonid ecology. Maps; charts.}, pages = {p.186-196}, keywords = {Aeromonas salmonicida, Alsea Bay, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, Elk River, ENV), erythrocytic necrosis virus or erythrocytic inclusion body syndrom (EIBS, Listonella anguillarum, Nonophyetus salmincola, Renibacterium salmoninarum, Salmon River, Yaquina River, Yersinia ruckeri}, doi = {10.1577/H03-071.1}, author = {Arkoosh, M. R. and Clemons, E. and Kagley, A. N. and Stafford, C. and Glass, A. C. and Jacobson, K. and Reno, P. and Myers, M. S. and Casillas, E. and Loge, F. and Johnson, L. L. and Collier, T. K.} } @article {33856, title = {Challenges and strategies for better use of scientific information in the management of coastal estuaries}, journal = {Estuaries}, volume = {26}, number = {4B}, year = {2003}, note = {From the PNCERS Study, a seven-year program that focused on four estuaries in Washington and Oregon: Gray{\textquoteright}s Harbor, Willapa Bay, Yaquina Bay and Coos Bay. This article also considers Tillamook Bay. Examines environmental indicators, environmental threats, and information management.}, pages = {1189-1204}, doi = {10.1007/BF02803373}, author = {Leschine, Thomas M. and Ferriss, Bridget E. and Bell, Kathleen P. and Bartz, Krista K. and MacWilliams, Sarah and Pico, Michelle and Bennett, Andrew K.} } @article {33811, title = {Effects of inbreeding on performance traits in Pacific oysters (Crassostrea gigas)}, journal = {Journal of Shellfish Research}, volume = {22}, number = {1}, year = {2003}, note = {Abstract only}, month = {2003}, pages = {329}, keywords = {aquaculture, biological, genetics, life history information, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas}, isbn = {0730-8000}, author = {Evans, F. and Matson, S. and Brake, J. and Langdon, Christopher J.} } @article {33851, title = {Effects of the invasive, nonindigenous seagrass Zostera japonica on nutrient fluxes between the water column and benthos in a NE Pacific estuary}, journal = {Marine Ecology Progress Series}, volume = {254}, year = {2003}, month = {Jun 4_2003}, pages = {69-80}, keywords = {ammonium, biological, Coquille Point, Craigie Point, Criteser{\textquoteright}s Marina, Grassy Point, Idaho Point, Japanese eelgrass=Zostera japonica, King Slough, Montgomery Creek, nitrate-nitrite, nutrient cycles, Oneatta Point, Oysterville, phosphorus, Sally{\textquoteright}s Slough}, doi = {10.3354/meps254069}, url = {https://www.int-res.com/articles/meps2003/254/m254p069.pdf}, author = {Larned, Scott T.} } @article {33846, title = {Family-based selection improves yields of Pacific oysters, Crassostrea gigas}, journal = {Journal of Shellfish Research}, volume = {22}, number = {1}, year = {2003}, note = {Abstract only}, month = {2003}, pages = {339-340}, keywords = {aquaculture, biological, genetics, molluscs, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas}, isbn = {0730-8000}, author = {Langdon, Christopher J. and Matson, S. and Brake, J. and Evans, F.} } @article {33816, title = {Feeding rates of the mud shrimp Upogebia pugettensis and implications for estuarine phytoplankton abundance}, journal = {Journal of Shellfish Research}, volume = {22}, number = {2}, year = {2003}, note = {Abstract only - presented at the NSA \& PCSGA 2002}, month = {Sep_2003}, pages = {604}, keywords = {biological, blue mud shrimp=Upogebia pugettensis, California softshell=Cryptomya californica, habitats, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas}, author = {Griffen, B.D. and Langdon, Christopher J. and DeWitt, Theodore H.} } @article {33831, title = {Interactions between human communities and estuaries in the Pacific Northwest: trends and implications for management}, journal = {Estuaries}, volume = {26}, number = {4B}, year = {2003}, note = {From the PNCERS Study, a seven-year program that focused on four estuaries in Washington and Oregon: Gray{\textquoteright}s Harbor, Willapa Bay, Yaquina Bay and Coos Bay. In addition to these four estuaries, this paper addresses Tillamook Bay and Tillamook County residents.}, pages = {994-1009}, keywords = {demographics, economics, environmental values, perceived threats to estuaries}, doi = {10.1007/BF02803359}, author = {Huppert, Daniel D. and Johnson, Rebecca L. and Leahy, Jessica and Bell, Kathleen} } @article {33911, title = {Relationships between water and sediment characteristics and benthic green macroalgal abundance in Yaquina Bay, Oregon: 1999-2002}, journal = {Journal of Phycology}, volume = {39}, number = {S1}, year = {2003}, note = {Abstract only}, month = {2003}, pages = {62}, keywords = {biological, ecosystem health, green algae, Yaquina Bay}, isbn = {0022-3646}, author = {Young, David R. and Ozretich, Robert J. and Specht, David T. and Lamberson, Janet O. and Caldwell, Richard S. and Hansen, G.I. and Stoffey, B.} } @article {33806, title = {Relative importance of survival and growth rate in determining yields of Pacific oysters, Crassostrea gigas}, journal = {Journal of Shellfish Research}, volume = {22}, number = {2}, year = {2003}, note = {Abstract only}, month = {2003}, pages = {602}, keywords = {aquaculture, biological, genetics, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas, Yaquina Bay}, author = {Evans, F. and Matson, S. and Brake, J. and Langdon, Christopher J.} } @article {33866, title = {A specific pathogen free culture system for C. gigas larvae and spat}, journal = {Journal of Shellfish Research}, volume = {22}, number = {2}, year = {2003}, note = {Abstract s of Technical Papers Presented at the 56th Annual Meeting of the National Shellfisheries Association (Pacific coast Section) \& Pacific Coast Shellfish Growers Association, Newport, Oregon, September 27-30, 2002}, month = {2003}, pages = {606}, keywords = {aquaculture, biological, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas, Yaquina Bay}, isbn = {0730-8000}, author = {Matson, S.E. and Langdon, Christopher J.} } @inbook {33876, title = {Yaquina Bay, Oregon}, booktitle = {Where the River Meets the Sea: Case Studies of Pacific Northwest Estuaries}, year = {2003}, note = {Excellent overview of the area at the turn of the century. Demographics, economy, recreation, hydrology, weather, indicator species, seabirds, fishing, oyster production. Maps, good charts, comparisons with other estuaries.}, pages = {p.83-105}, publisher = {Pacific Northwest Coastal Ecosystems Regional Study}, organization = {Pacific Northwest Coastal Ecosystems Regional Study}, address = {Seattle, Wa.}, keywords = {Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, Coos Bay, Dungeness crab = Metacarcinus magister (Cancer magister), Pacific oyster = Crassostrea gigas, Pink shrimp = Pandalas jordani, Rockfish = Sebastes spp., Yaquina Bay}, editor = {Litle, Kate and Parrish, Julia K.} } @article {33841, title = {Yields of cultured Pacific oysters Crassostrea gigas Thunberg improved after one generation of selection}, journal = {Aquaculture}, volume = {220}, number = {1/4}, year = {2003}, month = {2003}, pages = {227-244}, keywords = {aquaculture, biological, genetics, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas}, isbn = {0044-8486}, doi = {10.1016/S0044-8486(02)00621-X}, author = {Langdon, Christopher J. and Evans, F. and Jacobson, D. and Blouin, M.} } @article {33766, title = {Survival and growth effects on yields of Pacific oysters, Crassostrea gigas}, journal = {Journal of Shellfish Research}, volume = {21}, number = {1}, year = {2002}, note = {Abstracts of Technical Papers, 55th Annual Meeting, National Shellfisheries Association \& Pacific Coast Oyster Growers Association, Silverdale, Washington, September 20-22, 2001}, month = {2002}, pages = {327}, keywords = {aquaculture, biological, developmental stages, genetics, growth, Marine Science Center Dock, Pacific oyster=Crassostrea gigas}, isbn = {0730-8000}, author = {Langdon, Christopher J. and Evans, F. and Brake, J. and Matson, S.} } @conference {33661, title = {Genetic-environment interaction effect on yields of Pacific oysters planted at subtidal and intertidal sites [abstract]}, booktitle = {Aquaculture 2001: Book of Abstracts}, volume = {754}, year = {2001}, note = {Alternate title: Aquaculture: a fantasy come true: book of abstracts. Meeting held Jan 21-25, 2001.}, pages = {p.349}, publisher = {World Aquaculture Society}, organization = {World Aquaculture Society}, address = {Lake Buena Vista, FL}, keywords = {aquaculture, biological, genetics, Idaho Flats, Pacific oyster=Crassostrea gigas}, author = {Langdon, Christopher J. and Jacobson, D. and Matson, S. and Evans, F. and Blouin, M.} } @article {15726, title = {Reducing Impacts of Hatchery Steelhead Programs}, volume = {no.2001-01}, year = {2001}, note = {Attempts to determine how many hatchery steelhead were straying into other rivers to spawn, also if the timing of their spawning increased the risk of hatchery steelhead interbreeding with wild fish. Investigated the use of local broodstock in hatcheries, and some methods of reducing interbreeding between hatchery and wild steelhead. Hatchery salmonids in the Alsea and Siuslaw rivers were studied from 1991-1993.}, pages = {88 p.}, institution = {Oregon Dept. of Fish and Wildlife, Fish Division}, address = {Portland, Or.}, keywords = {Alsea River, Chetco River, Coquille River, genertics, hatcheries, hatchery salmonids, Necanicum River, Nehalem River, Nestucca River, reproductive behavior, Rogue River, Siletz River, Siuslaw River, Sixes River, steelhead trout = Oncorhynchus mykiss, Tenmile Creek, Trask River, Umpqua River, wild salmonids, Yachats River, Yaquina River}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A18493}, author = {Lindsay, Robert B. and Kenaston, Ken R. and Schroeder, R. Kirk} } @conference {33626, title = {Secondary production in coastal estuaries: Dungess crab and English sole as bioindicators}, booktitle = {Pacific Northwest Coastal Ecosystems Regional Study Annual Report}, series = {PNCERS Annual Report 2001}, year = {2001}, note = {This aspect of the PNCERS program is intended to provide a sense of spatial,temporal distribution and abundance of certain macrofauna in Oregon and Washington coastal estuaries.}, month = {2002}, pages = {p.79-90}, publisher = {Coastal Ocean Programs, NOAA}, organization = {Coastal Ocean Programs, NOAA}, keywords = {abundance, biological, breakwater, dungeness crab=Metacarcinus magister (Cancer magister), English sole=Pleuronectes vetulus, Grassy Point, habitats, The Bend, Yaquina Bay, Yaquina Bay Bar}, url = {https://ir.library.oregonstate.edu/concern/defaults/x346d5217}, author = {Armstrong, David A. and Gunderson, Donald and Rooper, Chris}, editor = {Parrish, J.K. and Litle, Kate} } @article {83287, title = {Socio-economic dynamics of Pacific Northwest estuaries}, year = {2001}, note = {In this chapter, we begin by describing the regional economies and human populations of the areas surrounding five Pacific Northwest estuaries: Grays Harbor and Willapa Bay in Washingon, and Coos Bay, Yquina Bay and Tillamook Bay in Oregon. Recognizing the nature of the local economies and the demographic characteristics of residents is fundamental to establishing the socio-economic baslein. In the second and third sections, we build on the baseline descriptions and focus on important findings from the Coastal Resident Survey and Coastal Visitor Survey.}, pages = {p.58-75}, institution = {Coastal Ocean Programs, NOAA}, keywords = {biological, demographics, economics, human impacts, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/defaults/4m90dw29q}, author = {Bell, Kathleen and Farley, Christopher and Huppert, Daniel and Johnson, Rebecca and Leschine, Thomas}, editor = {Parrish, J.K. and Litle, Kate} } @article {33536, title = {Absence of overall feedback in a benthic estuarine community: a system potentially buffered from impacts of biological invasions}, journal = {Estuaries}, volume = {23}, number = {2}, year = {2000}, month = {2000}, pages = {275-291}, isbn = {0160-8347}, author = {Castillo, Gonzalo C. and Li, H.W. and Rossignol, P.A.} } @article {33581, title = {Development of a specific-pathogen-free (SPF) hatchery and nursery for production of Pacific oyster seed}, journal = {Journal of Shellfish Research}, volume = {19}, number = {1}, year = {2000}, note = {Abstract only. Abstracts of Technical Papers Presented at the 53rd Annual Meeting of the Pacific Coast Oyster Growers Association \& National Shellfisheries Association, Pacific Coast Section, Vancouver, Washington, Sept. 29-Oct. 1, 1999}, month = {2000}, pages = {688}, keywords = {aquaculture, biological, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas, shellfish disease}, isbn = {0730-8000}, author = {Langdon, Christopher J. and Jacobson, D.P. and Evans, F. and Onal, E. and Matson, S.E.} } @article {33556, title = {An estimation of historic and current levels of salmon production in the Northeast Pacific ecosystem}, journal = {Fisheries}, volume = {25}, number = {1}, year = {2000}, month = {January_2000}, pages = {15-21}, keywords = {commercial fisheries - salmon, general, historical, methodology, nutrient cycles, Pacific salmonids=Oncorhynchus species, seafood processing}, doi = {10.1577/1548-8446(2000)025<0015:AEOHAC>2.0.CO;2}, author = {Gresh, Ted and Lichatowich, James L. and Schoonmaker, Peter} } @article {33546, title = {Geographic signatures of North American West Coast estuaries}, journal = {Estuaries and Coasts}, volume = {23}, number = {6}, year = {2000}, note = {General review.}, pages = {p.765-792}, keywords = {Alsea River, brids, commercial fisheries, Coos Bay, economics, general, human impacts, marshes, Nehalem Bay, Netarts Bay, recreational fisheries, Rogue River, salmonid species, Siletz River, Siuslaw River, Tillamook Bay, Umpqua River, wetlands, Yaquina River}, author = {Emmett, Robert and Llans{\'o}, Roberto and Newton, Jan and Thom, Ron and Hornberger, Michelle and Morgan, Cheryl and Levings, Colin and Copping, Andrea and Fishman, Paul} } @article {33701, title = {Indicators of west coast estuary health}, year = {2000}, note = {"In this chapter, we attempt to lay out a conceptual framework for indicator selection germane to the West Coast estuaries, including those studied extensively by PNCERS researchers. In the latter half of the chapter we offer an annotated list of candidate indicators for each of the three system components: the physical environment, the socio-economic system, and the the biological system. A concurrent table presents all candidate indicators, their constituent measures and proxies (if appropriate) and the relevant estuarine types within which the indicators are valuable." (Author excerpt)}, month = {2001}, pages = {p.1-20}, institution = {Coastal Ocean Programs, NOAA}, keywords = {biological, general ecosystem description, physical, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/defaults/x346d5217}, author = {Parrish, Julia K. and Bell, Kathleen and Logerwell, Elizabeth and Roegner, Curtis}, editor = {Parrish, J.K. and Litle, Kate} } @article {33576, title = {The molluscan broodstock program--improving Pacific oyster broodstock through genetic selection}, journal = {Journal of Shellfish Research}, volume = {19}, number = {1}, year = {2000}, note = {Abstract only}, month = {2000}, pages = {616}, keywords = {aquaculture, biological, genetics, molluscs, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas}, isbn = {0730-8000}, author = {Langdon, Christopher J. and Jacobson, D.P. and Evans, F. and Blouin, M.S.} } @article {33521, title = {Phototoxic evaluation of marine sediments collected from a PAH-contaminated site}, journal = {Archives of Environmental Contamination and Toxicology}, volume = {38}, number = {3}, year = {2000}, month = {April_2000}, pages = {274-282}, keywords = {amphipods, chemical, Leptocheirus plumulosus, Oregon State University Hatfield Marine Science Center, Rhepoxynius abronius, sediments, toxicity}, author = {Boese, Bruce L. and Ozretich, Robert J. and Lamberson, Janet O. and Cole, Faith A. and Swartz, Richard C. and Ferraro, Steven P.} } @article {33631, title = {Socio-economic dynamics of Pacific Northwest estuaries}, year = {2000}, note = {In this chapter, we begin by describing the regional economies and human populations of the areas surrounding five Pacific Northwest estuaries: Grays Harbor and Willapa Bay in Washingon, and Coos Bay, Yquina Bay and Tillamook Bay in Oregon. Recognizing the nature of the local economies and the demographic characteristics of residents is fundamental to establishing the socio-economic baslein. In the second and third sections, we build on the baseline descriptions and focus on important findings from the Coastal Resident Survey and Coastal Visitor Survey.}, month = {2001}, pages = {p.58-75}, institution = {Coastal Ocean Programs, NOAA}, keywords = {biological, demographics, economics, human impacts, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/defaults/4m90dw29q}, author = {Bell, Kathleen and Farley, Christopher and Huppert, Daniel and Johnson, Rebecca and Leschine, Thomas}, editor = {Parrish, J.K. and Litle, Kate} } @article {33476, title = {Avoidance response of the estuarine amphipod Eohaustorius estuariusto polycyclic aromatic hydrocarbon-contaminated field-collected sediments}, journal = {Environmental Toxicology and Chemistry}, volume = {18}, number = {6}, year = {1999}, month = {June_1999}, pages = {1232-1235}, keywords = {amphipods, chemical, Eohaustorius species, hydrocarbons, Idaho Flats, sediment data, sediments, toxicity}, author = {Kravitz, Michael J. and Lamberson, Janet O. and Ferraro, Steven P. and Swartz, Richard C. and Boese, Bruce L. and Specht, David T.} } @article {33451, title = {Toxicity and phototoxicity of mixtures of highly lipophilic PAH compounds in marine sediment: can the _PAH model be extrapolated?}, journal = {Archives of Environmental Contamination and Toxicology}, volume = {36}, year = {1999}, month = {1999}, pages = {270-280}, keywords = {Alsea River estuary, amphipods, aquatic invertebrates, biological, chemical, crustaceans, light, Rhepoxynius abronius, sediments, toxicity, water pollution, Yaquina Bay}, author = {Boese, Bruce L. and Ozretich, Robert J. and Lamberson, Janet O. and Swartz, Richard C. and Cole, Faith A. and Pelletier, Judith and Jones, Jill K.P.} } @article {33376, title = {July OFO birding weekend: Lincoln County, 18-19 July 1998}, journal = {Oregon Birds}, volume = {24}, number = {4}, year = {1998}, month = {Winter_1998}, pages = {118}, keywords = {Beaver Creek estuary, biological, birds, Depoe Bay, South Jetty, Yaquina Bay}, author = {Lofton, Maeve} } @article {33421, title = {Manila clam aquaculture in shrimp-infested mudflats}, journal = {Journal of Shellfish Research}, volume = {17}, number = {1}, year = {1998}, month = {1998}, pages = {223-229}, keywords = {aquaculture, aquatic invertebrates, biological, bivalves, blue mud shrimp=Upogebia pugettensis, community ecology, crustaceans, decapods, dungeness crab=Metacarcinus magister (Cancer magister), introduced species, Japanese littleneck=Tapes phillippinarum, King Slough, molluscs, reproductive behavior, statistical analysis, Yaquina Bay, yellow shore crab=Hemigrapsus oregonensis}, author = {Smith, Matthew D. and Langdon, Christopher J.} } @article {33436, title = {Molecular cloning of a cDNA encoding molt-inhibiting hormone of the crab, Cancer magister}, journal = {Molecular and Cellular Endocrinology}, volume = {136}, year = {1998}, month = {1998}, pages = {145-149}, keywords = {aquatic invertebrates, biological, crustaceans, decapods, dungeness crab=Metacarcinus magister (Cancer magister), physiology, Yaquina Bay}, author = {Umphrey, Heidi R. and Lee, Kara J. and Watson, Douglas R. and Spaziani, Eugene} } @article {33416, title = {Oregon Ocean Salmon Fisheries, 1996. Annual status Report.}, year = {1998}, month = {April_1998}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {age composition, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, environmental policy and law, fishes, general, hatchery salmonids, methodology, natural resource management, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, size composition}, author = {Schindler, Eric and Loynes, Tom and Kaiser, Rodney J. and Oregon. Dept. of Fish and Wildlife,} } @article {33346, title = {Photoinduced toxicity of PAHs amd alkylated PAHs to a marine infaunal amphipod (Rhepoxynius abronius)}, journal = {Archives of Environmental Contamination and Toxicology}, volume = {34}, year = {1998}, month = {1998}, pages = {235-240}, keywords = {Alsea River estuary, amphipods, aquatic invertebrates, biological, chemical, crustaceans, light, Rhepoxynius abronius, toxicity, water pollution, Yaquina Bay}, author = {Boese, Bruce L. and Lamberson, Janet O. and Swartz, Richard C. and Ozretich, Robert J. and Cole, Faith A.} } @article {33401, title = {Status review of chinook salmon from Washington, Idaho, Oregon, and California}, volume = {no.35}, year = {1998}, note = {NOAA seems to have an earlier version of this report (their version, Dec. 1997) on their website as the source for the online copy. The team studying Chinook salmon felt that for the Oregon Coast this species is not in danger of extinction, nor thought to become extinct "in the forseeable future" (p.249). Appendix D gives the known history of hatchery releases. }, month = {1998, Feb.}, pages = {443 p.}, institution = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service}, address = {[Seattle, Wash.] }, keywords = {Alsea River, Chinook salmon = Oncorhynchus tshawytscha, Coos River, Coquille River, endangered species, environmental policy and law, general ecosystem description, genetics, hatcheries, historical, Kilchis River, life history information, Miami River, Millicoma River, natural resource management, Necanicum River, Nehalem River, Nestucca River, population biology, population count, Salmon River, salmonid species, Siletz River, Siuslaw River, statistics, Tillamook River, Trask River, Umpqua River, Wilson River, Yachats River, Yaquina River}, url = {https://repository.library.noaa.gov/view/noaa/3034}, author = {Myers, James M. and Kope, Robert G. and Bryant, Gregory J. and Teel, David J. and Lierheimer, Lisa J. and Wainwright, Thomas C. and Grant, W. Stewart and Waknitz, F. William and Neely, Kathleen and Lindley, Steven T. and Waples, Robin S.} } @proceedings {33446, title = {Use of color infrared aerial photography to map distribution of eelgrass and green macroalgae in a non-urbanized estuary of the Pacific Northwest U.S.A.}, year = {1998}, note = {Meeting held October 5-7, 1998.}, pages = {P.II-37 - II-45}, publisher = {ERIM International Inc.}, address = {San Diego, Calif.}, keywords = {biological, eelgrass=Zostera marina, Enteromorpha species, geographic information system, Idaho Flats, Lower Yaquina River, Ulva species, Upper Yaquina River, Yaquina Bay, Yaquina River}, isbn = {10663711}, author = {Young, David R. and Specht, David T. and Patrick J Clinton and Lee, Henry II.} } @conference {32131, title = {Variability of Pacific Northwest marine ecosystems and relation to salmon production}, booktitle = {Change in Pacific Northwest coastal ecosystems: proceedings of the Pacific Northwest Coastal Ecosystems Regional Study Workshop.}, series = {NOAA Coastal Ocean Program Decision Analysis Series}, volume = {no.11}, year = {1998}, note = {Meeting held Aug. 13-14, 1996. Contemporary salmon production (hatchery and wild) for the Yaquina are shown (chart p. 216) to be 52\% of 1890 production.}, pages = {p.181-252}, publisher = {NOAA Coastal Ocean Office}, organization = {NOAA Coastal Ocean Office}, address = {Troutdale, Or.}, keywords = {biological, chinook salmon=Oncorhynchus tshawytscha, chum salmon=Oncorhynchus keta, coastal upwelling, coho salmon=Oncorhynchus kisutch, community ecology, ecological succession, ecosystem modeling, estuarine dynamics, general, general ecosystem description, Pacific salmonids=Oncorhynchus species, physical, sockeye salmon=Oncorhynchus nerka, steelhead=Oncorhynchus mykiss (rainbow trout=Salmo gairdneri)}, url = {https://repository.library.noaa.gov/view/noaa/1668}, author = {Bottom, Daniel L. and Lichatowich, James A. and Frissell, Christopher A.}, editor = {McMurray, Gregory R. and Robert J Bailey} } @article {33206, title = {Evaluation of a first-order model for the prediciton of the bioaccumulation of PCB{\textquoteright}s and DDT from sediment into the marine deposit-feeding clam Macomoa nasuta}, journal = {Environmental Toxicology and Chemistry}, volume = {16}, number = {7}, year = {1997}, month = {1997}, pages = {1545-1553}, keywords = {aquatic invertebrates, bent-nose clam=Macoma nasuta, biological, bivalves, chemical, DDT, molluscs, polychlorinated biphenyls, sediments, toxicity, water pollution, Yaquina Bay}, author = {Boese, Bruce L. and Lee, Henry II. and Echols, Scott} } @article {33216, title = {General guidelines for using the sediment quality triad}, journal = {Marine Pollution Bulletin}, volume = {34}, number = {6}, year = {1997}, month = {1997}, pages = {368-372}, keywords = {chemical, community ecology, methodology, sediments, toxicity, water pollution}, author = {Chapman, Peter M. and Anderson, Brian and Carr, Scott and Engles, Virginia and Green, Roger and Hameedi, Jawed and Harmon, Michelle and Haverland, Pamela and Hyland, Jeff and Ingersoll, Chris and Long, Edward and Rodgers, John Jr. and Salazar, Michael and Sibley, Paul K. and Smith, Paul J. and Swartz, Richard C. and Thompson, Bruce and Windom, Herbert} } @article {33301, title = {Oregon Ocean Salmon Fisheries, 1995. Annual Report.}, year = {1997}, month = {January_1997}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, OR]}, keywords = {age composition, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, environmental policy and law, fishes, general, hatchery salmonids, methodology, natural resource management, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, size composition}, author = {Schindler, Eric and Loynes, Tom and Kaiser, Rodney J. and Oregon. Dept. of Fish and Wildlife. Fish Division,} } @article {33311, title = {Photoactivation and toxicity of mixtures of polyclyclic aromatic hydrocarbon compounds in marine sediments}, journal = {Environmental Toxicology and Chemistry}, volume = {16}, number = {10}, year = {1997}, month = {October_1997}, pages = {2151-2157}, keywords = {amphipods, chemical, hydrocarbons, Idaho Flats, Rhepoxynius abronius, sediment data, sediments, toxicity}, author = {Swartz, Richard C. and Ferraro, Steven P. and Lamberson, Janet O. and Cole, Faith A. and Ozretich, Robert J. and Boese, Bruce L. and Schults, Donald W. and Behrenfeld, Michael and Ankley, Gerald T.} } @article {33201, title = {Photoinduced toxicity of fluoranthene to seven marine benthic crustaceans}, journal = {Archives of Environmental Contamination and Toxicology}, volume = {32}, number = {4}, year = {1997}, month = {1997}, pages = {389-393}, keywords = {Alsea River estuary, amphipods, aquatic invertebrates, biological, chemical, crustaceans, Eohaustorius species, fluoranthene, light, Rhepoxynius abronius, toxicity, water pollution, Yaquina Bay}, author = {Boese, Bruce L. and Lamberson, Janet O. and Swartz, Richard C. and Ozretich, Robert J.} } @article {33136, title = {Aquaculture potential of the Suminoe oyster (Crassostrea ariakensis Fugita 1913)}, journal = {Aquaculture}, volume = {144}, number = {4}, year = {1996}, month = {1996}, pages = {321-338}, keywords = {aquaculture, aquatic invertebrates, bivalves, developmental stages, growth, introduced species, life history information, molluscs, Pacific oyster=Crassostrea gigas, physiology, population biology, reproductive behavior, sex ratio, Suminoe oyster=Crassostrea ariakensis, Tillamook estuary, Winant, Yaquina Bay}, author = {Langdon, Christopher J. and Robinson, Anja M.} } @article {33161, title = {Oregon Ocean Salmon Fisheries, 1994. Annual Report}, year = {1996}, month = {February_1996}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {age composition, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, environmental policy and law, fishes, general, hatchery salmonids, methodology, natural resource management, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, size composition}, author = {Schindler, Eric and Kaiser, Rodney J. and Loynes, Tom and Oregon. Dept. of Fish and Wildlife. Fish Division,} } @article {33106, title = {Status review of West Coast steelhead from Washington, Idaho, Oregon, and California}, volume = {no.27}, year = {1996}, note = {Yaquina River winter steelhead run trend was downward (-2.9\%/year). This estimate was based on the run on Big Elk Creek. Hatchery practices (past and present) identified as major threat to genetic integrity for steelhead in this area.}, pages = {261 p.}, institution = {U.S. National Marine Fisheries Service}, address = {Seattle, Wash.?}, keywords = {Big Elk Creek, endangered species, hatcheries, management plans, steelhead trout = Oncorhynchus mykiss, Yaquina River}, url = {https://www.nwfsc.noaa.gov/assets/25/5592_06172004_122523_steelhead.pdf}, author = {Busby, Peggy J. and Wainwright, Thomas C. and Bryant, Gregory J. and Lierheimer, Lisa J. and Waples, Robin S. and Waknitz, F. William and Lagomarsino, Irma and U.S. National Marine Fisheries Service. Northwest Fisheries Science Center, and U.S. National Marine Fisheries Service. Southwest Region. Protected Species Management Division,} } @article {33131, title = {Update on the molluscan broodstock program -- production of families}, journal = {Journal of Shellfish Research}, volume = {15}, number = {3}, year = {1996}, note = {Abstract only}, month = {December_1996}, pages = {787}, keywords = {aquaculture, aquatic invertebrates, biological, bivalves, molluscs, Oregon State University Hatfield Marine Science Center, physiology, population biology, reproductive behavior}, author = {Langdon, Christopher J.} } @article {32951, title = {Spring and fall migration of geese across the coast range of Lincoln County, Oregon}, journal = {Oregon Birds}, volume = {21}, number = {no.1}, year = {1995}, month = {1995}, pages = {p.10-12}, keywords = {Alsea River estuary, biological, birds, Canada goose=Branta canadensis, population biology, reproductive behavior, Siletz River estuary, snow goose=Chen caerulescens, Thornton Creek, white-fronted goose=Anser albifrons, Yaquina Bay, Yaquina River, Yaquina River Basin}, author = {Bayer, Range D. and Lowe, Roy W. and Faxon Darrel} } @article {52361, title = {Oregon Rocky Shores Natural Resource Inventory: in Support of the Oregon Territorial Sea Plan, Ocean Policy Advisory Council}, year = {1994}, note = {This is a useful look at the state{\textquoteright}s rocky shores. Each site comes with a map and site description, including natural resources, human use, management jurisdictions and potential opportunities for education and interpretation. Includes a section on river mouth jetties.}, month = {1994, Dec.}, pages = {168 p.}, institution = {Oregon Dept. of Fish and Wildlife. Marine Region}, address = {Newport, Or.}, keywords = {aquatic mammals, birds, Brookings, Cape Arago, Cape Blanco, Cape Falcon, Cape Foulweather, Cape Kiwanda, Cape Lookout, Cape Meares, Cape Perpetua, Cape Sebastian, Cascade Head, Coquille Point, Depoe Bay, Fankport, Five Mile Point, habitats, Haystack Rock, Heceta Head, Hubbard, Humbug Mountain, jetties, Lincoln City (Or.), Mack Arch, natural resource management, Orford Reef, Port Orford, recreation, Rogue Reef, Seal Rock, Tillamook Head, tourism, Whaleshead, Yachats, Yaquina Head}, author = {Fox, David and Merems, Arlene and Miller, Bruce and Long, Michele and McCrae, Jean and Mohler, June and Oregon Dept. of Fish and Wildlife,} } @article {32771, title = {Effect of marine bacteria on the culture of axenic oyster Crassostrea gigas (Thunberg) larvae}, journal = {Biological Bulletin}, volume = {184}, number = {1}, year = {1993}, month = {February_1993}, pages = {36-51}, keywords = {algal species, aquatic invertebrates, aquatic vegetation, bacteria, biological, bivalves, community ecology, developmental stages, growth, introduced species, molluscs, Netarts estuary, Pacific oyster=Crassostrea gigas, physiology, size composition, Yaquina Bay}, author = {Douillet, Philippe and Langdon, Christopher J.} } @article {32796, title = {The First One Hundred Years in Lincoln County, Oregon, 1893 to 1993}, year = {1993}, note = {Historical photographs}, month = {1993}, pages = {200 p.}, institution = {Lincoln County Centennial Committee}, address = {Newport, Or.}, keywords = {Agate Beach, Alsea River estuary, Depoe Bay, Elk City, general, historical, human impacts, industrial development, Nye Beach, Siletz River estuary, urban development, Yachats River estuary, Yaquina Bay, Yaquina River}, author = {Moe, Ray T.} } @article {32791, title = {Guide for the Culture of the Suminoe Oyter (Crassostrea rivularis)}, year = {1993}, note = {Funded by National Coastal Resources and Development Institute}, month = {May_1993}, pages = {20 p.}, institution = {Oregon State University}, address = {Newport, Or.}, keywords = {aquaculture, biological, life history information, Oregon State University Hatfield Marine Science Center, Suminoe oyster=Crassostrea ariakensis}, author = {Langdon, Christopher J. and Robinson, Anja M.} } @article {32836, title = {Tsunamis affecting the west coast of the United States 1806-1992}, volume = {no.29}, year = {1993}, note = {Good data graphs}, month = {December_1993}, pages = {242 p.}, institution = {National Geophysical Data Center}, address = {Boulder, Colo.}, keywords = {Alsea River estuary, coastal hazards, Columbia River estuary, Coos River estuary, Coquille River estuary, Depoe Bay, Nehalem River estuary, Netarts estuary, physical, Port Orford, Rogue River estuary, Siuslaw River estuary, Tillamook estuary, Umpqua River estuary, Yaquina Bay}, url = {https://repository.library.noaa.gov/view/noaa/13442}, author = {U. S. Department of Commerce. National Oceanic and Atmospheric Administration, and Lander, James F. and Lockridge, Patricia A. and Kozuch, Michael J.} } @conference {32726, title = {Are we really testing one species? A story of Corophium taxonomy [abstract]}, booktitle = {Abstracts, 13th Annual Meeting, 8-12 November 1992, Cincinnati Convention Center, Cincinnati, Ohio}, year = {1992}, note = {Abstract no. HA6A20. Society of Environmental Toxicology and Chemistry (SETAC). Meeting held November 8-12, 1992.}, pages = {p. 268 }, publisher = {Society of Environmental Toxicology and Chemistry}, organization = {Society of Environmental Toxicology and Chemistry}, address = {Cincinnati, OH}, keywords = {amphipods, biological, taxonomy, Yaquina Bay}, author = {Redmond, M.S. and Jones, J.K.P. and Lamberson, J.O. and Chapman, J. and Society of Environmental Toxicology and Chemistry,} } @article {32696, title = {Assemblages of U.S. west coast estuaries based on the distribution of fishes}, journal = {Journal of Biogeography}, volume = {19}, year = {1992}, note = {The authors analyzed twenty-eight West Coast estuaries regarding whether any of 360 possible fish species were present in those estuaries. Using these results, they grouped the 28 estuaries into six possible classifications. This estuary falls into the Northern Estuarine Group. Important species are given.}, pages = {p.251-267}, keywords = {Arrow goby = Clevelandia ios, Brown Irish lord = Hemilepdotus spinosus, Coos Bay, Copper rockfish = Sebastes caurinus, fishes, Humboldt Bay, Netarts Bay, Padded sculpin = Artedius fenestralis, Penpoint gunnel = Apodichthys flavidus, Silverspotted sculpin = Belpsias cirrhosus, Snake prickleback = Lumpenus sagitta, species composition, species list, Tillamook Bay, Tube-snout = Aulorhynchus flavidus, Tubenose poacher = Pallasina barbata, Umpqua River, Wolf-eel = Amarrhichthys ocellatus, Yaquina Bay}, author = {Monaco, Mark E. and Lowery, Tony A. and Emmett, Robert L.} } @article {32691, title = {Development of the commercial aquaculture of the Suminoe oyster (Crassostrea rivularis)}, journal = {Journal of Shellfish Research}, volume = {11}, number = {2}, year = {1992}, note = {Abstract only}, month = {1992}, pages = {556}, keywords = {aquaculture, aquatic invertebrates, biological, bivalves, introduced species, molluscs, Oregon State University Hatfield Marine Science Center, physiology, reproductive behavior, Suminoe oyster=Crassostrea ariakensis, water temperature, Yaquina Bay}, author = {Langdon, Christopher J. and Robinson, Anja M.} } @book {32656, title = {Lincoln County Regional Strategies Proposal Round III: Salmon Enhancment Polyculture Operations}, year = {1992}, month = {May_1992}, publisher = {Regional Strategies Fund}, organization = {Regional Strategies Fund}, address = {Newport, Or.}, keywords = {aquaculture, biological, coho salmon=Oncorhynchus kisutch, economics, Oregon Aqua-Foods, Red abalone=Haliotis rufescens}, author = {Hobson, W. and Levin, John-Eric and Radtke, Hans and Severson, Richard} } @article {32641, title = {Microbiological quality of the Yaquina estuary}, volume = {no. 110}, year = {1992}, month = {1992}, pages = {72 p.}, institution = {Water Resources Research Institute, Oregon State University}, address = {Corvallis, Or.}, keywords = {air temperature data, bacteria, Big Elk Creek, biological, climate, Deer Creek, estuarine dynamics, general ecosystem description, hydrology, Little Elk Creek, Mill Creek, physical, precipitation data, salinity data, Salmon Creek, sediment data, shellfish poisoning, tidal data, Trapp Creek, water pollution, water temperature data, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/defaults/02871099r}, author = {Arnold, Gary and Caldwell, Richard S. and Lannan, Cathy and Winton, James and Water Resources Research Institute,} } @article {32686, title = {Seasonal variation in the utilization of dietary protein by the mussel, Mytilus trossulus}, journal = {Journal of Shellfish Research}, volume = {11}, number = {1}, year = {1992}, note = {Abstract only}, month = {1992}, pages = {199-200}, keywords = {aquatic invertebrates, biological, bivalves, blue mussel=Mytilus edulis, feeding behavior, molluscs, organic carbon, physiology, population biology, Yaquina Bay}, author = {Kreeger, Daniel A. and Langdon, Christopher J.} } @article {32701, title = {Status of Anadromous Salmonids in Oregon Coastal Basins}, year = {1992}, month = {1992}, pages = {83 p.}, institution = {Oregon Department of Fish and Wildlife}, address = {Newport, Or.}, keywords = {biological, chinook salmon=Oncorhynchus tshawytscha, chum salmon=Oncorhynchus keta, coho salmon=Oncorhynchus kisutch, geographical distribution, life history information, Pacific salmonids=Oncorhynchus species, steelhead=Oncorhynchus mykiss}, author = {Nickelson, Thomas E. and Nicholas, J. W. and McGie, Alan M. and Lindsay, Robert B. and Bottom, Daniel L. and Kaiser, Rodney J. and Jacobs, Steven E.} } @book {32761, title = {White Sturgeon Management Framework Plan}, year = {1992}, month = {September_1992}, pages = {201 p.}, publisher = { Pacific States Marine Fisheries Commission}, organization = { Pacific States Marine Fisheries Commission}, address = {Portland, Or.}, keywords = {biological, commercial fisheries, geographical distribution, life history information, recreational fisheries, white sturgeon=Acipenser transmontanus, Yaquina River}, author = {White Sturgeon Planning Committee, and Hanson, David L. Hanson and Cochnauer, Tim G. and DeVore, John D. and Henry E. Jr Forner and Kisanuki, Tom T. and Kohlhorst, David W. and Lumley, Paul and McCabe, George, Jr. and Nigro,Anthony A. and Parker, Steve and Swartz, Don and VanVooren, Al} } @article {32581, title = {Development of the commercial aquaculture of the Suminoe oyster (Crassostrea rivularis)}, journal = {Journal of Shellfish Research}, volume = {10}, number = {1}, year = {1991}, note = {Abstract only}, month = {1991}, pages = {238}, keywords = {aquaculture, aquatic invertebrates, biological, bivalves, developmental stages, growth, introduced species, life history information, molluscs, Pacific oyster=Crassostrea gigas, physiology, population biology, reproductive behavior, sex ratio, Suminoe oyster=Crassostrea ariakensis, Yaquina Bay}, author = {Langdon, Christopher J. and Robinson, Anja M.} } @article {32596, title = {Pacific salmon at the crossroads: stocks at risk from California, Oregon, Idaho, and Washington}, journal = {Fisheries}, volume = {16}, number = {2}, year = {1991}, month = {1991}, pages = {4-21}, keywords = {biological, chinook salmon=Oncorhynchus tshawytscha, chum salmon=Oncorhynchus keta, coastal cutthroat trout=Oncorhynchus clarki clarki, coho salmon=Oncorhynchus kisutch, geographical distribution, Pacific salmonids=Oncorhynchus species, pink salmon=Oncorhynchus gorbuscha, sockeye salmon=Oncorhynchus nerka, Yaquina River, Yaquina River Basin}, author = {Nehlsen, Willa and WIlliams, J.E. and Lichatowich, James A.} } @mastersthesis {32481, title = {Land-Based Polyculture of Marine Macroalgae and Pacific Salmon}, year = {1990}, note = {Major professor was Chris Langdon. }, month = {1990}, pages = {62 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fisheries and Wildlife}, address = {Corvallis, Or.}, keywords = {aquaculture, biological, Coho salmon = Oncorhynchus kisutch, Farlowa mollis, Gigartina exasperata, Gracilaria lemaneiformis, Irisaea cordata, Oregon State University Hatfield Marine Science Center, Palmaria mollis, Porphyra abbottae, Porphyra nereocystis, red macroalgae = Palmaria mollis, theses}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/w3763983s}, author = {Levin, John-Eric M.} } @article {32451, title = {Predicting bioaccumulation potential: a test of a fugacity-based model}, journal = {Archives of Environmental Contamination and Toxicology}, volume = {19}, number = {3}, year = {1990}, month = {1990}, pages = {386-394}, keywords = {aquatic invertebrates, bent-nose clam=Macoma nasuta, bioassay, bivalves, chemical, Idaho Flats, mathematical modeling, molluscs, nutrient cycles, Oregon State University Hatfield Marine Science Center, organic carbon, sediments, Yaquina Bay}, author = {Ferraro, Steven P. and Lee, Henry II. and Ozretich, Robert J. and Specht, David T.} } @article {32511, title = {Toxicity of flouranthene in sediment to marine amphipods: a test of the equilibrium partitioning approach to sediment quality criteria}, journal = {Environmental Toxicology and Chemistry}, volume = {9}, year = {1990}, month = {1990}, pages = {1071-1080}, keywords = {amphipods, aquatic invertebrates, bioassay, biological, chemical, Corophium species, crustaceans, fluoranthene, physiology, Rhepoxynius abronius, sediments, toxicity, Yaquina Bay}, author = {Swartz, Richard C. and Schults, Donald W. and DeWitt, Theodore H. and Ditsworth, George R. and Lamberson, Janet O.} } @article {32331, title = {Comparison of two capsule types for the delivery of dietary protein to the Pacific oyster, Crassostrea gigas}, journal = {Journal of Shellfish Research}, volume = {8}, number = {2}, year = {1989}, note = {Abstract only}, month = {December_1989}, pages = {414}, keywords = {aquaculture, aquatic invertebrates, biological, bivalves, feeding behavior, introduced species, molluscs, Pacific oyster=Crassostrea gigas, physiology, water temperature, Yaquina Bay}, author = {Langdon, Christopher J.} } @article {32386, title = {Direct measurement technique for determining ventilation rate in the deposit feeding clam Macoma nasuta (Bivalvia, Tellinaceae).}, journal = {Marine Biology}, volume = {101}, number = {2}, year = {1989}, month = {1989}, pages = {211-218}, keywords = {aquatic invertebrates, bent-nose clam=Macoma nasuta, biological, bivalves, feeding behavior, molluscs, Oregon State University Hatfield Marine Science Center, Yaquina Bay}, author = {Specht, David T. and Lee, H. II.} } @mastersthesis {36571, title = {Foraging Behavior of the Limnephilid Caddisfly, Dicosmoecus gilvipes, and Co-Occurring Herbivores in Streams of the Pacific Northwest}, year = {1989}, note = {This is an in-depth look at the life of an aquatic insect on Big Elk Creek. The author looked for microhabitat preferences, abundance and distribution of the giant orange sedge caddisfly and compared its preferences with other grazing animals in the creek. She developed a behavioral catalog in order to have a context in which she could interpret behavior under different conditions. In the laboratory, she used tme-lapse photography to study foraging behavior. Includes charts, tables, a schematic diagram of a 50-meter stretch of Big Elk Creek, and scanning electron microphotographs of the caddisfly. Doctoral dissertation. Major professor was Stanley V. Gregory.}, pages = {174 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Fisheries and Wildlife}, address = {Corvallis, Or.}, keywords = {Agapetus bifidus, algae, American dipper = Cinclus mexicanus, aquatic insects, behavior, Big Elk Creek, feeding behavior, Giant orange sedge caddisfly = Dicosmoecus gilvipes, Glossosoma penitum, hydrology, life history information, Lithodlyphus virens, Shasta juga snail = Juga silicula, spatial distribution, theses, Yaquina Rive Basinr}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/kd17cw12j}, author = {Li, Judith Lew} } @article {32306, title = {Measuring the acute toxicity of estuarine sediments}, journal = {Environmental Toxicology and Chemistry}, volume = {8}, number = {11}, year = {1989}, month = {1989}, pages = {1035-1048}, keywords = {amphipods, aquatic invertebrates, bioassay, biological, chemical, crustaceans, Eohaustorius species, fluoranthene, Hyalella species, Oregon State University Hatfield Marine Science Center, Rhepoxynius abronius, salinity, sediment data, toxicity, Yaquina Bay}, author = {DeWitt, Theodore H. and Swartz, Richard C. and Lamberson, Janet O.} } @article {32336, title = {Species profiles : life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest) : English sole}, volume = {no. 82-11.101.}, year = {1989}, note = {Estuaries serve as nurseries for young English sole, although adult fish migrate to the ocean. This is a classic overview of the biology and life history of English sole in the Pacific Northwest. Good bibliography, if a bit dated.Map, charts, line drawings.}, pages = {17 p.}, keywords = {Alsea Bay, commercial fisheries, Coos Bay, Coquille Bay, English sole = Parophrys vetulus, fecundity, growth, juvenile fish, life history information, Nestucca Bay, Netarts Bay, recreational fisheries, reproductive behavior, Salmon River Estuary, Sand Lake, Siletz Bay, Siuslaw Bay, taxonomy, Tillamook Bay, Umpqua River estuary, Winchester Bay, Yaquina Bay}, url = {https://archive.org/details/DTIC_ADA214303}, author = {Lassuy, Dennis R. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and U.S.National Wetlands Research Center} } @article {32341, title = {Species profiles : life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest) : pacific herring}, volume = {no. 82-11.126}, year = {1989}, note = {This is a classic overview of the biology and life history of Pacific herring in the Pacific Northwest. Good bibliography, if a bit dated. Map, charts, line drawings. Yaquina Bay is the onlyOregon bay that supports a commercial roe fishery, but Coos, Umpqua, and Tillamook Bays support smaller bait and recreational fisheries..." (p.9)}, pages = {18 p.}, institution = {: U.S. Army Corps of Engineers, Coastal Ecology Group, Waterways Experiment Station}, address = {Vicksburg, MS}, keywords = {Alsea Bay, commercial fisheries, Coos Bay, Coquille Bay, fecundity, fishes, growth, juvenile fish, life history information, Nehalem Bay, Nestucca Bay, Netarts Bay, Pacific herring = Clupea pallasi, recreational fisheries, reproductive behavior, Sand Lake, Siletz Bay, Siuslaw Bay, taxonomy, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://archive.org/details/DTIC_ADA224836}, author = {Lassuy, Dennis R. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and U.S.National Wetlands Research Center} } @article {32116, title = {Analysis of Pollutant Discharges from West Coast Point Sources}, year = {1988}, month = {April_1988}, pages = {61 p.}, institution = {National Oceanic and Atmospheric Administration, Strategic Assessment Branch}, address = {Rockville, MD}, keywords = {biological, chemical, heavy metals, Siletz River estuary, waste disposal, water pollution, water quality, Yaquina Bay}, author = {Arnold, Forest D. and Lowe, Jamison A. and Farrow, Daniel R.G. and National Coastal Pollutant Discharge Inventory,} } @article {32236, title = {Effects of culture conditions on the sensitivity of a phoxocephalid amphipod, Rhepoxynius abronius, to cadmium in sediments}, journal = {Environmental Toxicology and Chemistry}, volume = {7}, number = {12}, year = {1988}, month = {1988}, pages = {953-959}, keywords = {amphipods, aquaculture, aquatic invertebrates, biological, cadmium, chemical, crustaceans, physiology, Rhepoxynius abronius, sediments, toxicity, Trace metals, Yaquina Bay}, author = {Robinson, Anja M. and Lamberson, Janet O. and Cole, Faith A. and Swartz, Richard C.} } @article {32241, title = {Effects of mixtures of sediment contaminants on the marine infaunal amphipod, Rhepoxynius abronius}, journal = {Environmental Toxicology and Chemistry}, volume = {7}, number = {12}, year = {1988}, month = {1988}, pages = {1013-1020}, keywords = {amphipods, aquatic invertebrates, biological, chemical, crustaceans, fluoranthene, mercury, physiology, polychlorinated biphenyls, Rhepoxynius abronius, sediments, toxicity, Trace metals, Yaquina Bay, zinc}, author = {Swartz, Richard C. and Kemp. P.F. and Schults, D.W. and Lamberson, Janet O.} } @article {32056, title = {The 1986 razor clam fishery}, year = {1987}, note = {Gives data on recreational and commercial clam fisheries. Gives total harvest, age composition data, survey of clam diggers. Best possible copy: vertical lines on original copy. South Beach is one of 16 Oregon beaches sampled south of Tillamook Head.}, month = {June_1987}, pages = {6 p.}, institution = {Oregon Department of Fish and Wildlife}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/3t945r52d}, author = {Link, Terry and Oregon. Dept. of Fish and Wildlife,} } @article {32061, title = {Bibliography of publications and theses: urnal publications 1979-1985, data reports 1955-1985, selected reference numbers 1978-1985, theses, dissertations 1978-1985}, volume = {no.87-1}, year = {1987}, month = {May_1987}, pages = {108 p.}, institution = {College of Oceanography, Oregon State University}, type = {Bibliography}, address = {Corvallis, OR}, keywords = {bibliography, general}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/h702q762b}, author = {Ludwig, Miriam D. (compiler)} } @article {32051, title = {Incidence of Vibrio cholerae from estuaries of the United States west coast}, journal = {Applied and Environmental Microbiology}, volume = {53}, number = {6}, year = {1987}, month = {June_1987}, pages = {1344-1348}, keywords = {biological, blue mussel=Mytilus edulis, California mussel=Mytilus californianus, molluscs, Nuttall cockle=Clinocardium nuttallii, Pacific gaper=Tresus nuttallii, Pacific oyster=Crassostrea gigas, shellfish disease, Vibrio, Yaquina Bay}, author = {Kaysner, Charles A. and Carlos Jr. Abeyta and Wekell, Marleen M. and Angelo Jr. DePaola and Stott, Robert F. and Leitch, Jerrold M.} } @article {32021, title = {Methane in surface waters of Oregon estuaries and rivers}, journal = {Limnology and Oceanography}, volume = {32}, number = {3}, year = {1987}, month = {1987}, pages = {p.716-722}, keywords = {chemical, hydrology, Lower Yaquina River, methane, salinity data, Upper Yaquina River, water quality data, Yaquina Bay}, author = {de Angelis, Marie A. and Lilley, Marvin D.} } @article {31901, title = {The 1985 razor clam fishery}, year = {1986}, note = {Best possible copy. Gives data on recreational and commercial clam fisheries. Gives total harvest, age composition data, survey of clam diggers. Includes report on the NIX (nuclear inclusion unknown) parasite infestation and new shellfish regulations affecting clam diggers. South Beach is one of 16 Oregon beaches sampled south of Tillamook Head.}, month = {March_1986}, pages = {7 p.}, institution = {Oregon Department of Fish and Wildlife}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/hd76s0855}, author = {Link, Terry and Oregon. Dept. of Fish and Wildlife,} } @article {31886, title = {Response of the phoxocephalid amphipod, Rhepoxynius abronius, to a small oil spill in Yaquin Bay, Oregon}, journal = {Estuaries}, volume = {9}, number = {4B}, year = {1986}, month = {December_1986}, pages = {p.340-347}, keywords = {amphipods, aquatic invertebrates, crustaceans, physiology, Rhepoxynius abronius, water pollution, Yaquina Bay}, author = {Kemp, Paul F. and Swartz, Richard C. and Lamberson, Janet O.} } @article {31956, title = {Sediment toxicity to a marine infaunal amphipod: cadmium and its interaction with sewage sludge}, journal = {Marine Environmental Research}, volume = {18}, year = {1986}, month = {1986}, pages = {133-153}, keywords = {amphipods, aquatic invertebrates, bioassay, biological, cadmium data, chemical, crustaceans, Oregon State University Hatfield Marine Science Center, Rhepoxynius abronius, sediment data, toxicity, Trace metals, water pollution, Yaquina Bay}, author = {Swartz, Richard C. and Ditsworth, G.R. and Schults, D.W. and Lamberson, Janet O.} } @book {24756, title = {Species profiles: life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): coho salmon}, series = {Biological Report (Washington, D.C.)}, volume = {no.82 (11.48)}, year = {1986}, note = {This is a classic overview of the biology and life history of coho salmon in the Pacific Northwest. Good bibliography, if dated.Map, charts, line drawings.}, month = {1986}, pages = {18 p.}, publisher = {U.S. Fish and Wildlife Service; U.S. Army Engineer Waterways Experiment Station}, organization = {U.S. Fish and Wildlife Service; U.S. Army Engineer Waterways Experiment Station}, address = {Washington, D.C.; Vicksburg, Miss.}, keywords = {Alsea River, Coho salmon = Oncorhynchus kisutch, Coquille River, geographic distribution, habitats, life history information, Nehalem River, Nestucca River, North Umpqua River, Rogue River, Siletz River, Siuslaw River, Smith River, South Umpqua River, taxonomy, Trask River, Umpqua River, water quality, water temperature}, url = {https://archive.org/details/DTIC_ADA172613}, author = {Laufle, Jeffrey C. and La Touche, Yves David. and Pauley, Gilbert B. and Shepard, Michael F. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and National Coastal Ecosystems Team (U.S.),} } @article {31761, title = {The 1984 razor clam fishery}, year = {1985}, note = {Gives data on recreational and commercial clam fisheries. Gives total harvest, age composition data, survey of clam diggers. Mentions the spread of a nuclear inclusion parasite and a paralytic shellfish poisoning alert. South Beach is one of 16 Oregon beaches sampled south of Tillamook Head.}, month = {March_1985}, pages = {5 p.}, institution = {Oregon Department of Fish and Wildlife}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/sn009z50n}, author = {Link, Terry and Oregon. Dept. of Fish and Wildlife,} } @proceedings {31791, title = {Phoxocephalid amphipod bioassay for marine sediment toxicity}, volume = {no.707}, year = {1985}, type = {Conference Paper}, keywords = {amphipods, aquatic invertebrates, bioassay, biological, chemical, crustaceans, Oregon State University Hatfield Marine Science Center, physiology, Rhepoxynius abronius, salinity data, sediments, toxicity, water pollution, Yaquina Bay}, author = {Swartz, Richard C. and DeBen, Waldemar A. and Jones, J.K.P. and Lamberson, Janet O. and Cole, Faith A.} } @article {31641, title = {The 1983 razor clam fishery}, year = {1984}, note = {Gives data on recreational and commercial clam fisheries. Gives total harvest, age composition data, survey of clam diggers. Notes that Oregon razor clam harvests hit a record low, due to the 1982-1983 El Nino. South Beach is one of 16 Oregon beaches sampled south of Tillamook Head.}, month = {March_1984}, pages = {7 p.}, institution = {Oregon Department of Fish and Wildlife}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/qj72p809d}, author = {Link, Terry and Oregon. Dept. of Fish and Wildlife,} } @article {31656, title = {Broodstock management of Crassostrea gigas; environmental influences on broodstock conditioning}, journal = {Aquaculture}, volume = {39}, number = {Special Issue}, year = {1984}, month = {1984}, pages = {217-228}, keywords = {aquaculture, biological, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas, reproductive behavior}, author = {Muranaka, Michael Shigeo and Lannan, James E. Jr.} } @article {31516, title = {The 1982 razor clam fishery}, volume = {no.83-1}, year = {1983}, note = {Gives data on recreational and commercial clam fisheries. Gives total harvest, age composition data, survey of clam diggers. South Beach is one of 16 Oregon beaches sampled south of Tillamook Head.}, month = {February_15_1983}, pages = {5 p.}, institution = {Oregon Department of Fish and Wildlife}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, issn = { no.83-1}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/zg64tm62z}, author = {Link, Terry and Oregon. Dept. of Fish and Wildlife,} } @article {31526, title = {Oregon Ocean Salmon Fisheries, 1982. Annual Report. October 1, 1981 to September 30, 1982}, year = {1983}, month = {[1983]}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {age composition, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, environmental policy and law, fishes, general, natural resource management, Pacific salmonids=Oncorhynchus species, pink salmon=Oncorhynchus gorbuscha, recreational fisheries - salmon, size composition}, author = {Robert K McQueen and Osis, Laimons and Lewis, Stephen L. and National Marine Fisheries Service and Oregon. Dept. of Fish and Wildlife,} } @article {31481, title = {Recolonization of sediment-associated microalgae and effects of estuarine infauna on microalgal production.}, journal = {Marine Ecology: Progress Series}, volume = {11}, number = {3}, year = {1983}, month = {March_1983}, pages = {p.227-232}, keywords = {aquatic vegetation, biological, community ecology, diatoms, green algae, Idaho Flats, Oregon State University Hatfield Marine Science Center, physiology, primary production, sediments, Yaquina Bay}, url = {https://www.int-res.com/articles/meps/11/m011p227.pdf}, author = {Davis, Michael W. and Lee, Henry II.} } @article {31346, title = {The 1981 razor clam fishery}, year = {1982}, note = {Gives data on recreational and commercial clam fisheries. Gives total harvest, age composition data, survey of clam diggers. South Beach is one of 16 Oregon beaches sampled south of Tillamook Head.}, month = {January_29_1982}, pages = {6 p.}, institution = {Oregon Department of Fish and Wildlife}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/m039k545g}, author = {Link, Terry and Oregon. Dept. of Fish and Wildlife,} } @mastersthesis {31336, title = {Conditions in the Oregon Commercial Fishery Based on the Salmon, Crab and Shrimp Industries from 1967 to 1980}, year = {1982}, note = {"Changes in the Oregon salmon, crab and shrimp fisheries were documented from 1967 to 1980. The related socio-economic conditions in fishing communities were described." (from the Abstract) Includes descriptions of the Ports of Coos Bay and Newport at the beginning of the 1980s, and their fisheries. Masters thesis in interdisciplinary studies. Major professor was Richard A. Tubb.}, pages = {108 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.A.I.S.}, chapter = {Interdisciplinary Studies: Fisheries and Wildlife, Anthropology, Education}, address = {Corvallis, Or.}, keywords = {Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, commercial fisheries - salmon, Dungeness crab = Metacarcinus magister (Cancer magister), Pink shrimp = Pandalas jordani, Port of Coos Bay, Port of Newport, shellfish, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/0g354k561}, author = {Lewis, Mary J} } @article {31331, title = {The effects of depuration, size and sex on trace metal levels in bay mussels}, journal = {Marine Pollution Bulletin}, volume = {13}, number = {1}, year = {1982}, month = {1982}, pages = {p.27-29}, keywords = {aquatic invertebrates, biological, bivalves, blue mussel=Mytilus edulis, cadmium, chemical, copper, manganese, molluscs, nickel, physiology, toxicity, Trace metals, Yaquina Bay, Yaquina Bay Bridge, zinc}, author = {LaTouche, Y. David and Mix, Michael C.} } @article {31341, title = {Lincoln County Estuary Management Plan}, year = {1982}, month = {[1982]}, pages = {196 p.}, institution = {Lincoln County, Oregon}, address = {[Newport, Or.]}, keywords = {Alsea River estuary, Boone Slough, Depot Slough, dredging, environmental policy and law, general, habitat conservation, habitat restoration, human impacts, industrial development, land ownership, land use, natural resource management, Oysterville, physical modifications, Sally{\textquoteright}s Bend, Salmon River Estuary, Siletz River estuary, Toledo, urban development, waste disposal, water quality, water rights, water use, Yaquina Bay, Yaquina City}, url = {https://www.co.lincoln.or.us/documentcenter/view/1077}, author = {Lincoln County Planning Department,} } @article {31381, title = {Management of the Ocean Salmon Fishery. Annual Report. October 1, 1980 to September 30, 1981}, year = {1982}, month = {[1982]}, keywords = {age composition, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, environmental policy and law, fishes, general, natural resource management, Pacific salmonids=Oncorhynchus species, pink salmon=Oncorhynchus gorbuscha, recreational fisheries - salmon, size composition}, author = {Oregon. Dept. of Fish and Wildlife. Fisheries Division, and Robert K McQueen and Loomis, David W. and Lewis, Stephen L.} } @article {31351, title = {Oregon Ocean Salmon Fisheries, 1980-81. Annual Report: October 1, 1980 to September 30,1981}, year = {1982}, month = {[1982]}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {age composition, biological, catch statistics, Chetco River estuary, Columbia River estuary, commercial fisheries - salmon, Coos River estuary, Coquille River estuary, Depoe Bay, economics, environmental policy and law, fishes, general, hatchery salmonids, methodology, natural resource management, Nehalem River estuary, Nestucca River estuary, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, Rogue River estuary, Siuslaw River estuary, statistical analysis, Umpqua River estuary, Yaquina Bay}, author = {Robert K McQueen and Loomis, David W. and Lewis, Stephen L. and U.S. National Marine Fisheries Service, and Oregon. Dept. of Fish and Wildlife,} } @article {31326, title = {Seasonal variations of arsenic and other trace elements in bay mussels (Mytilus edulis)}, journal = {Bulletin of Environmental Contamination and Toxicology}, volume = {29}, year = {1982}, month = {1982}, pages = {p.665-670}, keywords = {aquatic invertebrates, arsenic, bioassay, biological, bivalves, blue mussel=Mytilus edulis, cadmium, chemical, copper, manganese, molluscs, nickel, physiology, trace elements, Trace metals, water pollution, Yaquina Bay, zinc}, author = {LaTouche, Y.David and Mix, Michael C.} } @article {31151, title = {The 1980 razor clam fishery}, year = {1981}, note = {Gives data on recreational and commercial clam fisheries. Gives total harvest, age composition data, survey of clam diggers. South Beach is one of 16 Oregon beaches sampled south of Tillamook Head.}, month = {March_10_1981}, pages = {7 p.}, institution = {Oregon Department of Fish and Wildlife}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/4m90dw13t}, author = {Link, Terry and Oregon. Dept. of Fish and Wildlife,} } @article {31191, title = {Management of the Ocean Salmon Fishery. Annual Report. October 1, 1979 to September 30, 1980}, year = {1981}, month = {[1981]}, keywords = {age composition, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, environmental policy and law, fishes, general, natural resource management, Pacific salmonids=Oncorhynchus species, pink salmon=Oncorhynchus gorbuscha, recreational fisheries - salmon, size composition}, author = {Oregon. Dept. of Fish and Wildlife. Fisheries Division, and Robert K McQueen and Loomis, David W. and Lewis, Stephen L.} } @article {31161, title = {Oregon Ocean Salmon Fisheries, 1979. Annual Report: October 1, 1979 to September 30,1980}, year = {1981}, month = {[1981]}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {age composition, biological, catch statistics, Chetco River estuary, Columbia River estuary, commercial fisheries - salmon, Coos River estuary, Coquille River estuary, Depoe Bay, economics, environmental policy and law, fishes, general, hatchery salmonids, methodology, natural resource management, Nehalem River estuary, Nestucca River estuary, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, Rogue River estuary, Siuslaw River estuary, statistical analysis, Umpqua River estuary, Yaquina Bay}, author = {Robert K McQueen and Loomis, David W. and Lewis, Stephen L. and U.S. National Marine Fisheries Service, and Oregon. Dept. of Fish and Wildlife,} } @mastersthesis {31146, title = {Trace Metal Levels in a Population pf Mytilus edulis from Yaquina Bay, Oregon}, year = {1981}, note = {Major professor was Dr. Michael C. Mix. }, month = {April_1981}, pages = {135 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of General Science (Radiation Biology)}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, bioassay, biological, bivalves, blue mussel=Mytilus edulis, cadmium, chemical, copper, molluscs, nickel, physiology, population biology, South Jetty, theses, Trace metals, vanadium, Yaquina Bay, zinc}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/v692t8920}, author = {La Touche, Yves David.} } @article {30961, title = {The 1979 razor clam fishery}, volume = {no. 79-3}, year = {1980}, note = {Gives data on recreational and commercial clam fisheries. Gives total harvest, age composition data, survey of clam diggers. South Beach is one of 16 Oregon beaches sampled south of Tillamook Head.}, month = {May_1980}, pages = {6 p.}, institution = {Oregon Department of Fish \& Wildlife}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/qz20st17z}, author = {Link, Terry and Oregon. Dept. of Fish and Wildlife,} } @article {30936, title = {Broodstock management of Crassostrea gigas: I. Genetic and environmental variation in survival in the larval rearing system}, journal = {Aquaculture}, volume = {21}, number = {4}, year = {1980}, month = {1980}, pages = {p.323-336}, keywords = {aquaculture, biological, genetics, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas}, author = {Lannan, James E. Jr.} } @article {30946, title = {Broodstock management of Crassostrea gigas: II. Broodstock conditioning to maximize larval survival}, journal = {Aquaculture}, volume = {21}, number = {4}, year = {1980}, month = {1980}, pages = {p.336-345}, keywords = {aquaculture, biological, genetics, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas}, author = {Lannan, James E. Jr. and Robinson, Anja M. and Breese, Wilbur P.} } @article {30941, title = {Broodstock management of Crassostrea gigas: III. Selective breeding for improved larval survival}, journal = {Aquaculture}, volume = {21}, number = {4}, year = {1980}, month = {1980}, pages = {p.347-351}, keywords = {aquaculture, biological, genetics, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas}, author = {Lannan, James E. Jr.} } @article {30931, title = {Broodstock management of Crassostrea gigas: IV. Breeding and larval survival}, journal = {Aquaculture}, volume = {21}, number = {4}, year = {1980}, month = {1980}, pages = {p.353-356}, keywords = {aquaculture, biological, genetics, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas}, author = {Lannan, James E. Jr.} } @article {30951, title = {Comprehensive Plan [Lincoln County, Oregon]: Second Draft}, year = {1980}, month = {January_1980}, institution = {[Newport, Or.]}, keywords = {commercial fisheries, demographics, economics, estuarine dynamics, general, general ecosystem description, historical, hydrology, industrial development, land ownership, land use, natural resource management, recreational fisheries, tourism, urban development, water quality, water use, Yaquina Bay, Yaquina River, Yaquina River Basin}, author = {Lincoln County (Ore.),} } @article {30971, title = {Cultural resource overview of BLM lands in northwestern Oregon : archaeology, ethnography, history}, volume = {no.20}, year = {1980}, note = {Good resource on prehistoric and historic culture of the region. Yaquina and Alsea peoples are grouped together (p.65-71), with more emphasis on the Alsea. A .pdf of this volume is available. Email mnchaccounting@uoregon.edu for access. }, pages = {198 p.}, institution = {University of Oregon. Dept. of Anthropology}, address = {Eugene, Or.}, keywords = {Alsea River, anthropology, archeology, historical, Native Americans, Salmon River, Tillamook Bay, Yaquina River}, author = {Minor, Rick and Beckham, Stephen Dow and Lancefield-Steeves, Phyllis E. and Toepel, Kathryn Anne}, editor = {Aikens, C. Melvin} } @article {31006, title = {An Ecological Characterization of the Pacific Northwest Coastal Region. Volume 4: Characterization Atlas - Watershed Unit Descriptions}, volume = {no.79/14}, year = {1980}, month = {July_1980}, pages = {620 p.}, institution = {United States Fish and Wildlife Service. Biological Services Program}, keywords = {Alsea River estuary, demographics, depleted populations, economics, estuarine dynamics, fishes, general ecosystem description, hydrology, McCaffery Slough, methodology, Pacific salmonids=Oncorhynchus species, physical, Pooles Slough, precipitation, Salmon River estuary, Siletz River estuary, Siuslaw River estuary, water quality, Yaquina Bay, Yaquina River Basin}, url = {https://babel.hathitrust.org/cgi/pt?id=mdp.39015086411835;view=1up;seq=3}, author = {Proctor, Charles M. and Garcia, John C. and Galvin, David V. and Lewis, Gary B. and Loehr, Lincoln C. and Massa, Alison M. and Ryckman Edgerly Tomlinson \& Associates Inc} } @inbook {31016, title = {Geology of the west-central part of the Oregon Coast Range}, booktitle = {Geologic field trips in Western Oregon and Southwestern Washington}, series = {Bulletin / State of Oregon, Department of Geology and Mineral Industries}, volume = {no.101}, year = {1980}, note = {Includes field trip log. Day 1: From Toledo to Yaquina Bay Road to Newport, then south to Cape Perpetua. Day 2: From Newport north to Siletz Bay, then east to Siletz gorge area, back to Newport.}, month = {March_1980}, pages = {p.39-76}, publisher = {Oregon Department of Geology and Mineral Industries}, organization = {Oregon Department of Geology and Mineral Industries}, keywords = {coastal dunes, environmental education, geological, paleosciences}, url = {https://www.oregongeology.org/pubs/B/B-101.pdf}, author = {Parke D. Jr. Snavely and NMacLeod, N. S. and Wagner, H. C. and Lander, D. L.} } @book {30956, title = {Lincoln County Lore: a Reprinting of Five Early Publications of the Lincoln County Historical Society}, year = {1980}, note = {Includes an account of Theodore Talbot{\textquoteright}s 1849 trip through the area. This account is digitized at https://ir.library.oregonstate.edu/concern/defaults/bz60cx72m }, month = {1980}, publisher = {Lincoln County Historical Society}, organization = {Lincoln County Historical Society}, address = {Newport, Or.}, keywords = {Alsea River estuary, general, historical, Siletz River estuary, Yaquina Bay, Yaquina River Basin}, author = {Lincoln County Historical Society,} } @article {30996, title = {Management of the Ocean Salmon Fishery. Annual Report: October 1, 1979 to September 30,1980}, year = {1980}, note = {The ocean salmon recreational fishery is now part of the Ocean Salmon Management Program commencing with the 1978 season. Activities pursued during FY 1979 included the sampling and analysis of catch statistics, Chinook age composition, mark recovery data, and coded wire tag data. Short term work continued on the Chinook maturity study, evaluation of a troll season extension for Chinook salmon off southern Oregon, and the collection of random coho scales for a Research Section scale study to separate hatchery and wild coho.}, month = {[1980]}, pages = {23 p.}, keywords = {age composition, biological, catch statistics, Chetco River estuary, Columbia River estuary, commercial fisheries - salmon, Coos River estuary, Coquille River estuary, Depoe Bay, economics, environmental policy and law, fishes, general, hatchery salmonids, methodology, natural resource management, Nehalem River estuary, Nestucca River estuary, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, Rogue River estuary, Siuslaw River estuary, statistical analysis, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/fn106z672}, author = {Oregon. Dept. of Fish and Wildlife. Fisheries Division, and Robert K McQueen and Loomis, David W. and Lewis, Stephen L.} } @article {30776, title = {1978 Oregon shrimp fishery}, volume = {no.79-1}, year = {1979}, note = {Summarizes statistical data for the 1978 fishery for Oregon pink shrimp (Pandalus jordani). Digitized by an ODFW employee.}, month = {February_1979}, institution = {Oregon Department of Fish and Wildlife}, keywords = {aquatic invertebrates, biological, catch statistics, Chetco River estuary, Columbia River estuary, commercial fisheries - shellfish, Coos River estuary, Coquille River estuary, crustaceans, decapods, economics, general, pink shrimp=Pandalus jordani, Port Orford, Rogue River estuary, Tillamook estuary, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/q811kk327}, author = {Lukas, Jerry} } @article {30771, title = {The 1978 razor clam fishery}, volume = {no. 79-2}, year = {1979}, note = {Gives data on recreational and commercial clam fisheries. Total harvest, age composition data, survey of clam diggers. South Beach is one of 16 Oregon beaches sampled south of Tillamook Head.}, month = {October_1979}, pages = {6 p.}, institution = {Oregon Department of Fish and Wildlife}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/nc580n36b}, author = {Link, Terry and Oregon. Dept. of Fish and Wildlife,} } @article {24391, title = {Oregon shrimp fishery, 1978}, volume = {no. 79-1}, year = {1979}, note = {Extensive statistical tables.}, pages = {11 p.}, institution = {Oregon Dept. of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {aquatic invertebrates, biological, catch statistics, Chetco River estuary, Columbia River estuary, commercial fisheries - shellfish, Coos River estuary, Coquille River estuary, crustaceans, decapods, economics, general, pink shrimp = Pandalus jordani, Port of Newport, Port Orford, Rogue River estuary, Tillamook estuary, Umpqua River estuary, Winchester Bay, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/cr56n174h}, author = {Lukas, Jerry and Oregon. Department of Fish and Wildlife,} } @article {30766, title = {Winter-spring abundance of larval English sole Parophrys vetulus between the Columbia River and Cape Blanco, Oregon during 1972-1975 with notes on occurences of three other pleuronectids}, journal = {Estuarine and Coastal Marine Science}, volume = {8}, year = {1979}, month = {Jan.-Jun.1979}, pages = {p.455-476}, keywords = {abundance, age composition, biological, coastal upwelling, commercial fisheries, developmental stages, English sole=Pleuronectes vetulus, fishes, geographical distribution, population biology, size composition, temporal distribution}, author = {LaRoche, Joanne L. and Richardson, Sally L.} } @article {30566, title = {1977 Oregon shrimp season}, volume = { no.78-2}, year = {1978}, note = { }, month = {March_1978}, pages = {10 p.}, institution = {Oregon Department of Fish and Wildlife}, keywords = {aquatic invertebrates, biological, catch statistics, Chetco River estuary, Columbia River estuary, commercial fisheries - shellfish, Coos River estuary, Coquille River estuary, crustaceans, decapods, economics, general, pink shrimp=Pandalus jordani, Port Orford, Rogue River estuary, Tillamook estuary, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/8336h2734}, author = {Lukas, Jerry} } @article {30561, title = {The 1977 razor clam fishery}, volume = {no.78-3}, year = {1978}, note = {Gives data on recreational and commercial clam fisheries. Total harvest, age composition data, survey of clam diggers. South Beach is one of 16 Oregon beaches sampled south of Tillamook Head.}, month = {April_1978}, pages = {5 p.}, institution = {Oregon Department of Fish and Wildlife}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, issn = {no.78-3}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/wh246s89w}, author = {Link, Terry and Oregon. Dept. of Fish and Wildlife,} } @article {30556, title = {Management of the Troll Salmon Fishery. Annual and Completion Report. October 1, 1977 to September 30, 1978}, year = {1978}, month = {November, 1978}, pages = {14 p.}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {age composition, biological, catch statistics, Chetco River estuary, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, Columbia River estuary, commercial fisheries - salmon, Coos River estuary, environmental policy and law, fishes, Pacific salmonids=Oncorhynchus species, population biology, size composition, statistical analysis, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/4t64gn98p}, author = {Lewis, Steven L. and McQueen, Robert E. and Zirges, Malcom H. and Oregon. Dept. of Fish and Wildlife, and National Marine Fisheries Service} } @article {30316, title = {The 1976 razor clam fishery}, volume = {no.77-4}, year = {1977}, note = {Gives data on recreational and commercial clam fisheries. Total harvest, age composition data, survey of clam diggers. South Beach is one of 16 Oregon beaches sampled south of Tillamook Head.}, month = {November_1977}, pages = {5 p.}, institution = {Oregon Department of Fish and Wildlife}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/cj82k811p}, author = {Link, Terry and Oregon. Dept. of Fish and Wildlife,} } @article {30311, title = {Management of the Troll Salmon Fishery. Annual and Completion Report. July 1, 1976 - September 30, 1977}, year = {1977}, note = {"The Troll Salmon Investigation is responsible for obtaining fishery and biological data, analyzing these data, and recommending appropriate management options for the troll fishery. Proposed management options are designed to achieve the optimum use of the salmon resource on a sustained basis. Activities pursued during FY 1977 included the sampling and analysis of catch statistics, chinook age composition, mark recovery data, and coded wire tag data. We were also involved with the ocean sport sampling data processing. Short term work was conducted to study chinook maturity, to evaluate a troll season extension off southern Oregon, and to obtain salmon length frequency data." (Introduction)}, month = {November_1977}, pages = {13 p.}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {age composition, biological, catch statistics, Chetco River estuary, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, Columbia River estuary, commercial fisheries - salmon, Coos River estuary, environmental policy and law, fishes, Pacific salmonids=Oncorhynchus species, population biology, size composition, statistical analysis, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/vh53ww540}, author = {Lewis, Steven L. and McQueen, Robert E. and Zirges, Malcom H. and Oregon. Dept. of Fish and Wildlife. Fisheries Division, and National Marine Fisheries Service} } @article {30256, title = {Water resources of Lincoln County coastal area, Oregon}, volume = {no.76-90}, year = {1977}, note = {Excellent data. Map in back pocket}, pages = {63 p.}, keywords = {chemical, climate, demographics, general ecosystem description, geological, Lincoln County, paleosciences, physical, precipitation data, sediment data, water quality data, Yaquina Bay, Yaquina River, Yaquina River Basin}, url = {https://ir.library.oregonstate.edu/concern/defaults/5425kb57g}, author = {Frank, F. J. and Laenen, Antonius and Oregon. Water Resources Dept. and U.S. Geological Survey. Water Resources Division,} } @article {30086, title = {The 1975 razor clam fishery}, year = {1976}, note = {Gives data on recreational and commercial clam fisheries. Total harvest, age composition data, survey of clam diggers. South Beach is one of 16 Oregon beaches sampled south of Tillamook Head.}, month = {August_1976}, pages = {5 p.}, institution = {Oregon Department of Fish and Wildlife}, address = {Portland, Or.}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, issn = {no. 76-9}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/ms35t915t}, author = {Link, Terry and Oregon. Dept. of Fish and Wildlife,} } @article {37451, title = {Methods of Supplementing Clam and Abalone Production: Annual Report July 1, 1975 to June 30, 1976}, year = {1976}, note = {This report presents information on clam distribution in Oregon estuaries. It includes clam population estimates for parts of Yaquina, Tillamook and Coos bays. Gives data from a clam aging study. Permits were issued for commercial clam harvesting in Yaquina and Coos bays. Reports on plantings of clams in Netarts and Yaquina Bays and the abalone planting in Whale Cove. Includes maps showing clams, substrate and vegetation for Nehalem, Tillamook, Netarts, Nestucca, Salmon River and Siletz bays.}, month = {1975-1976}, pages = {65 p.}, institution = {Oregon Fish Commission of Oregon, Division of Management and Research}, address = {Portland, Or.}, keywords = {abundance, age composition, aquaculture, aquatic invertebrates, biological, bivalves, commercial fisheries - shellfish, Coos Bay, fat gaper=Tresus capax, geographical distribution, methodology, molluscs, Nehalem River estuary, Nestucca River estuary, Netarts Bay, Siletz River estuary, size composition, Tillamook Bay, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/79407x89g}, author = {Gaumer, Thomas F. and Lukas, Gerald T. and Halstead, Bruce G. and Fish Commission of Oregon. Division of Management and Research, and Oregon. Department of Fish and Wildlife,} } @article {30076, title = {Oregon coast shoreline changes due to jetties}, journal = {Journal of the Waterways, Harbors and Coastal Engineering Division}, volume = {102}, number = {WW1}, year = {1976}, month = {Feb_1976}, pages = {p.13-30}, keywords = {computer programs, erosion, geological, North Jetty, sediments, South Jetty}, author = {Komar, Paul D. and Lizarraga-Arciniega, Jose ROman and Terich, Thomas A.} } @article {30096, title = {State Ownership, Yaquina Bay - Port of Newport North Shore Moorage Basin and Waterfront of Newport (Submerged and Submersible Lands)}, year = {1976}, note = {This memorandum describes reference material used to document changes in land ownership in Yaquina Bay from 1895 through 1973. The supporting documentation is not included.}, pages = {3 p.}, institution = {Oregon Division of State Lands}, address = {Salem, Or.}, keywords = {diking, dredging, historical, land ownership, land use, maps, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/cz30pt222}, author = {Lumley, Perry E. and Oregon. Division of State Lands,} } @article {29911, title = {The 1973 razor clam fishery}, volume = {no.75-2}, year = {1975}, note = {South Beach is one of 16 Oregon beaches sampled south of Tillamook Head. Gives data on recreational and commercial clam fisheries. Total harvest, age composition data, survey of clam diggers. Includes information on a paralytic shellfish poisoning alert - the first instance of high shellfish toxicity in Oregon since 1957.}, month = {June_1975}, pages = {4 p.}, institution = {Fish Commission of Oregon, Management and Research Division}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, paralytic shellfish poisoning, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, issn = {no. 75-2}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/gx41mj654}, author = {Link, Terry and Oregon. Fish Commission} } @article {29906, title = {The 1974 razor clam fishery}, volume = {no.1-75}, year = {1975}, note = {South Beach is one of 16 Oregon beaches sampled south of Tillamook Head. Gives data on recreational and commercial clam fisheries. Total harvest, age composition data, survey of clam diggers.}, month = {May_1975}, pages = {4 p.}, institution = {Fish Commission of Oregon, Management and Research Division}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/m039k5446}, author = {Link, Terry and Oregon. Fish Commission} } @article {29901, title = {Marketing characteristics of Oregon{\textquoteright}s fresh frozen shrimp industry}, volume = {no.75-002}, year = {1975}, note = { Also numbered as Special report (Oregon State University. Agricultural Experiment Station) ; 440.}, month = {August_1975}, pages = {23 p.}, institution = {Oregon State University, Sea Grant College Program}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, catch statistics, Chetco River estuary, Columbia River estuary, Coos River estuary, crustaceans, decapods, economics, general, pink shrimp=Pandalus jordani, Port Orford, seafood processing, Tillamook estuary, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/qz20sx38b}, author = {Langmo, R. D. and Carter, C. N. and Bailey, R. O.} } @article {29851, title = {Methods of Supplementing Clam and Abalone Production. Annual Report July 1, 1974 to June 30, 1975}, year = {1975}, note = {"The principal objectives of this study were: (1) to locate suitable intertidal and subtidal clam planting sites and to determine the feasibility of planting laboratory spawned clams, (2) to map locations of bay clams having cotmiercial harvesting potential, (3) to develop techniques for spawning and rearing native species of clams and determine If fast growth is a heritable characteristic of the Manila littleneck clam Venerupi.e phltpptnarvion and, (4) to determine the feasibility of purchasing and planting juvenile red abalone Haiwti8 rufescens along the Oregon coast." (Introduction) Includes maps of clam distribution and substrate type for Tillamook, Yauqina, Alsea and Coos bays.}, month = {July_1975}, pages = {35 p.}, institution = {Fish Commission of Oregon}, keywords = {Alsea River estuary, aquaculture, aquatic invertebrates, biological, bivalves, butter clam=Saxidomus giganteus, Coos River estuary, geographical distribution, Littleneck clam = Leukoma staminea, molluscs, Sally{\textquoteright}s Bend, Tillamook estuary, Venus clam = Venerupis phillipinarum, Whale Cove, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/mp48sd27c}, author = {Gaumer, Thomas F. and Lukas, Gerald and National Marine Fisheries Service ,} } @mastersthesis {24086, title = {Shoreline Changes Due to Jetty Construction on the Oregon Coast}, year = {1975}, note = {This thesis was reprinted as ORESU-T no. 75-4 and is also available online through the NOAA Sea Grant Institutional Repository. Discusses accretion of sand due to jetties and physical settings conducive to erosion. The author developed a computer model to simulate shoreline changes after the construction of the Siuslaw River jetties. "The shoreline advances of the model agreed closely with the actual shoreline changes found in surveys following jetty construction." (from the Abstract) The major professor was Paul D. Komar.}, month = {June_1975}, pages = {85 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {School of Oceanography}, address = {Corvallis, Or.}, keywords = {Chetco River, Coos Bay, Coquille River, erosion, jetties, Nehalem River, North Jetty, physical modifications, Rogue River, Siuslaw River, South Jetty, Tillamook Bay, Umpqua River, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/3b591c12s}, author = {Lizarraga Arciniega, Jose Roman} } @article {29921, title = {Shoreline changes due to jetty contruction on the Oregon coast}, volume = {no.75-004}, year = {1975}, note = {This publication is based on the Master of Science thesis published by Jose Roman Lizarraga Arciniega in 1975. Paul Komar was his major professor. Discusses accretion of sand due to jetties and physical settings conducive to erosion. The author developed a computer model to simulate shoreline changes after the construction of the Siuslaw River jetties. "The shoreline advances of the model agreed closely with the actual shoreline changes found in surveys following jetty construction." (from the Abstract) Fig.14 shows advance of the shoreline on the south side of the Yaquina River entrance from 1830 to 1974 (p.41). The thesis is also available online at: https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/3b591c12s}, month = {Septemberr_1975}, pages = {85 p.}, institution = {Oregon State University Sea Grant College Program}, address = {Corvallis, OR}, keywords = {Chetco River, Coos Bay, Coquille River, erosion, jetties, Nehalem River, North Jetty, physical modifications, Rogue River, Siuslaw River, South Jetty, Tillamook Bay, Umpqua River, Yaquina Bay}, url = {https://repository.library.noaa.gov/view/noaa/39192}, author = {Lizarraga Arciniega, Jose Roman and Komar, Paul D.} } @article {29661, title = {The 1971 razor clam fishery}, volume = {no.74-4}, year = {1974}, note = {Gives data on recreational and commercial clam fisheries. Total harvest, age composition data, survey of clam diggers on Clatsop County beaches. South Beach is one of 16 Oregon beaches sampled south of Tillamook Head.}, month = {May_1974}, pages = {6 p.}, institution = {Fish Commission of Oregon, Management and Research Division}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, issn = {no. 74-4}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/bg257f819}, author = {Link, Terry and Oregon. Fish Commission} } @article {29656, title = {The 1972 razor clam fishery}, volume = {no.74-5}, year = {1974}, note = {Gives data on recreational and commercial clam fisheries. Total harvest, age composition data, survey of clam diggers. South Beach is one of 16 Oregon beaches sampled south of Tillamook Head.}, month = {June_1974}, pages = {7 p.}, institution = {Fish Commission of Oregon, management and research division}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, issn = {no. 74-5}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/p8418n95n}, author = {Link, Terry and Oregon. Fish Commission} } @article {29671, title = {Clam-Abalone Stock Supplementation Feasability Study Annual Report July 1, 1973 to June 30, 1974}, year = {1974}, note = {"The objectives of this study were to locate suitable intertidal and subtidal clam planting sites and to determine the feasibility of planting laboratory spawned clams. Criteria used to determine the suitability of potential clam planting sites included: an evaluation of species of clams indigenous to the survey area and the type of substrate and vegetation within the survey area." (from the Introduction) Also reports on attempts to induce spawning in red abalone. Maps show vegetation, substrate types and clam beds for Netarts, Yaquina and Alsea bays.}, month = {June_1974}, pages = {20 p.}, institution = {Fish Commission of Oregon}, address = {[Salem, Or.]}, keywords = {abundance, age composition, Alsea Bay, aquaculture, aquatic invertebrates, biological, bivalves, Butter clam = Saxidomus giganteus, commercial fisheries - shellfish, geographical distribution, Manila clam = Venerupis japonica, methodology, molluscs, Netarts estuary, Red abalone = Haliotis rufescens, size composition, Whale Cove, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/6h440s904}, author = {Lukas, Gerald and Gaumer, Thomas F. and Oregon. Fish Commission} } @conference {29666, title = {A re-evaluation of the combined effects of temperature and salinity on survival and growth of Mytilus edulis larvae using response surface techniques}, booktitle = {Proceedings of the National Shellfisheries Association}, volume = {64}, year = {1974}, note = {Conference was held in 1973.}, pages = {p.73-76}, keywords = {aquatic invertebrates, biological, bivalves, blue mussel=Mytilus edulis, growth, molluscs, physiology, salinity, statistical analysis, water temperature, Yaquina Bay}, author = {Lough, Robert G.} } @article {36121, title = {Rock units and coastal landforms between Newport and Lincoln City, Oregon}, journal = {Ore Bin}, volume = {36}, number = {5}, year = {1974}, note = {Although our understanding of vulcanism on the Oregon Coast has evolved since this article was written, it is still a useful guide for the interested layperson. Includes bw photographs and geological maps.}, month = {1974, May}, pages = {p.69-90}, keywords = {Boiler Bay, Cape Foulweather, coastal hazards, Depoe Bay, Devil{\textquoteright}s Punchbowl, erosion, Fogarty Creek, geology, Jump-Off Joe, Lincoln Beach, Otter Rock, paleosciences, Siletz Bay, Siletz River, Siletz Spit, Whale Cove, Yaquina Bay, Yaquina Head, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/2f75rd38k}, author = {Lund, Ernest H.} } @article {29466, title = {The 1970 razor clam fishery}, year = {1973}, note = {South Beach is one of 16 Oregon beaches sampled south of Tillamook Head}, month = {January_1973}, pages = {3 p.}, institution = {Fish Commission of Oregon, management and research division}, keywords = {Agate Beach, age composition, aquatic invertebrates, biological, bivalves, catch statistics, commercial fisheries - shellfish, molluscs, Pacific razor=Siliqua patula, population biology, recreational fisheries - shellfish, South Beach Marina, Yaquina Bay}, issn = {no. 72-1}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/x633f171g}, author = {Link, Terry and Demory, Darrell and Oregon. Fish Commission} } @article {29076, title = {Clam-Abalone Spawning and Rearing Completion Report July 1, 1970 to June 30, 1973}, year = {1973}, note = {"COMPLETION REPORT: July 1, 1970 to June 30, 1973" Work included laboratory and field studies of Manila littleneck clams. The work also included spawning experiments on red abalone, and monitoring of test plots of abalone.}, month = {July_1973}, pages = {19 p.}, institution = {Oregon Fish Commission}, address = {[Portland, Or.]}, keywords = {algal species, aquaculture, aquatic invertebrates, aquatic vegetation, biological, bivalves, butter clam=Saxidomus giganteus, developmental stages, growth, Isochrysis species, life history information, molluscs, Monochrysis species, Pacific littleneck=Leukoma staminea, physiology, Red abalone=Haliotis rufescens, reproductive behavior, salinity, water temperature, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/js956g56j}, author = {Lukas, Gerald and Oregon. Fish Commission} } @mastersthesis {29456, title = {Genetics of the Pacific Oyster: Biological and Economic Implications}, year = {1973}, note = {Major professor was Dr. R. C. Simon. }, month = {1973}, pages = {104 p,}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Fisheries and Wildlife}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, biological, bivalves, economics, genetics, introduced species, molluscs, Oregon State University Hatfield Marine Science Center, Pacific oyster=Crassostrea gigas, physiology, theses, Upper Yaquina River, Winant, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/q811kn84d}, author = {Lannan, James E. Jr.} } @article {29461, title = {Overall Economic Development Plan for Lincoln County, Oregon}, year = {1973}, month = {June_1973}, institution = {Lincoln County}, address = {Newport, Or.}, keywords = {commercial fisheries, demographics, economics, general, general ecosystem description, historical, hydrology, industrial development, land ownership, land use, natural resource management, recreational fisheries, tourism, urban development, water quality, water use, Yaquina Bay, Yaquina River, Yaquina River Basin}, author = {Lincoln County Planning Department,} } @article {29421, title = {A pilot economic study of oyster raft culture in Yaquina Bay, Oregon}, journal = {Proceedings - National Shellfisheries Association}, volume = {63}, year = {1973}, month = {June_1973}, pages = {p.7}, keywords = {biological, commercial fisheries - shellfish, economics, kumamoto oyster=Crassostrea sikamea, Yaquina Bay}, author = {Gibson, Gary and Lund, Dennis} } @article {29476, title = {A response surface approach to the combined effects of temperature and salinity on the larval development of Adula Californiensis (Pelecypoda: Mytilidae) II. Long-term larval survival and growth in relation to respiration}, journal = {Marine Biology}, volume = {22}, number = {4}, year = {1973}, month = {1973b}, pages = {p.295-305}, keywords = {aquatic invertebrates, biological, bivalves, Buoy 11, Buoy 12, Buoy 15, Buoy 21, Buoy 29, Buoy 39, Buoy 45, California datemussel=Adula californiensis, developmental stages, growth, molluscs, Oregon State University Hatfield Marine Science Center, physiology, population biology, salinity data, statistical analysis, water temperature data, Yaquina Bay}, author = {Lough, Robert G. and Gonor, Jefferson J.} } @article {29471, title = {A response surface approach to the combined effects of temperature and salinity on the larval development of Adula Californiensis (Pelecypoda: Mytilidae). I. Survival and growth of three and fifteen-day old larvae}, journal = {Marine Biology}, volume = {22}, number = {3}, year = {1973}, month = {1973a}, pages = {p.241-250}, keywords = {aquatic invertebrates, biological, bivalves, Buoy 11, Buoy 12, Buoy 15, Buoy 21, Buoy 29, Buoy 39, Buoy 45, California datemussel=Adula californiensis, developmental stages, growth, molluscs, Oregon State University Hatfield Marine Science Center, physiology, population biology, salinity data, statistical analysis, water temperature data, Yaquina Bay}, author = {Lough, Robert G. and Gonor, Jefferson J.} } @article {29216, title = {The biochemical analysis of some estuarine phytoplankton species. I. Fatty acid composition}, journal = {Journal of Phycology}, volume = {8}, number = {3}, year = {1972}, month = {1972}, pages = {p.211-216}, keywords = {aquatic vegetation, biological, chemical, physiology, phytoplankton, Yaquina Bay}, author = {DeMort, Carole L. and Lowry, Robert and Tinsley, Ian and Phinney, Harry K.} } @article {36116, title = {Coastal landforms between Yachats and Newport, Oregon}, journal = {Ore Bin}, volume = {34}, number = {5}, year = {1972}, note = {Still useful after all these years, this guide offers a road log, geological maps and bw photographs.}, month = {1972, May}, pages = {p.73-91}, keywords = {Alsea Bay, Alsea River, Beaver Creek, Big Creek, erosion, geology, Ona Beach, paleosciences, Seal Rock, Yachats River, Yaquina Bay. Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/v692tb779}, author = {Lund, Ernest H.} } @article {29331, title = {Fish and Wildlife Resources of the Middle Coast Basin, Oregon, and Their Water Requirements (Revised)}, year = {1972}, note = {Excellent photographs. Fold-out maps. "Federal Aid to Fish Restoration. Completion Report Project F-69-R-8, Job Number 15"}, month = {March_1972}, pages = {98 p. + 3 maps}, institution = {Oregon State Game Commission}, address = {Portland, Or.}, keywords = {abundance, biological, birds, chinook salmon=Oncorhynchus tshawytscha, chum salmon=Oncorhynchus keta, coastal cutthroat trout=Oncorhynchus clarki clarki, coho salmon=Oncorhynchus kisutch, commercial fisheries, ecological values, economics, fishes, geographical distribution, historical, human impacts, hydrology, life history information, Pacific salmonids=Oncorhynchus species, physical modifications, recreational fisheries, reproductive behavior, steelhead=Oncorhynchus mykiss, temporal distribution, terrestrial mammals, Yaquina Bay, Yaquina River, Yaquina River Basin}, url = {https://ir.library.oregonstate.edu/concern/defaults/s7526d23w}, author = {Smith, Allan K. and Lauman, Jim E. and Oregon. State Game Commission} } @article {29246, title = {Status of Oyster Seed Production Studies at the OSU Pilot Oyster Hatchery, 1971-1972}, year = {1972}, note = {This paper is a record of early work in oyster culture in the west coast oyster industry. It summarizes operations for a year of running the OSU pilot oyster hatchery, and subsequent recommendations for its continued large-scale production of oysters.}, month = {[1972]}, pages = {6 p.}, keywords = {algal species, aquaculture, aquatic invertebrates, aquatic vegetation, biological, bivalves, economics, edible oyster=Ostrea edulis, Isochrysis species, molluscs, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Pacific oyster=Crassostrea gigas, reproductive behavior, toxicity, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/defaults/1544bp83z}, author = {Lund, Dennis} } @article {29081, title = {Clam-Abalone Spawning and Rearing Annual Report July 1, 1971 to June 30, 1972}, year = {1971}, note = {"Laboratory studies during the 1971-72 project year consisted primarily of developing mass culture and planting techniques for Manila littleneck clams (Venerupis semidecussata). Field studies continued utilizing laboratory-reared juvenile Manilas... Adult red abalone (Haliotis rufescens) were obtained from California for spawning. Experiments were initiated for culturing diatoms in the laboratory as a primary source of food for juvenile abalone." (from the Introduction)}, month = {July_1971}, institution = {U.S. Department of Commerce. National Oceanic and Atmospheric Administration}, address = {Portland, Or.}, keywords = {algal species, aquaculture, aquatic invertebrates, aquatic vegetation, biological, bivalves, butter clam=Saxidomus giganteus, developmental stages, growth, Isochrysis species, life history information, molluscs, Monochrysis species, Pacific littleneck=Leukoma staminea, physiology, Red abalone=Haliotis rufescens, reproductive behavior, salinity, water temperature, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/rr171z04d}, author = {Lukas, Gerald and Oregon. Fish Commission} } @article {29071, title = {Clam-Oyster-Abalone Larval Rearing: Annual Report July 1, 1970 to June 30, 1971}, year = {1971}, note = {Reports on studies of spawning and larval rearing of Manila littleneck clams, native littleneck clams, butter clams and gaper clams, including field work. "Field studies comparing growth and survival of laboratory-reared and imported Pacific and Kumamoto oysters were completed. We continued studies comparing various methods of oyster culture in Yaquina Bay. Winter survival of laboratory-reared oyster spat was determined. Adult red abalone were obtained for spawning purposes." (p.1) Covers July 1, 1970 to June 30, 1971.}, month = {July_1971}, pages = {16 p.}, institution = {Oregon Fish Commission}, address = {[Portland, Or.]}, keywords = {algal species, aquaculture, aquatic invertebrates, biological, bivalves, butter clam=Saxidomus giganteus, developmental stages, fat gaper=Tresus capax, growth, Isochrysis species, kumamoto oyster=Crassostrea sikamea, life history information, molluscs, Monochrysis species, Nuttall cockle=Clinocardium nuttallii, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Pacific littleneck=Leukoma staminea, Pacific oyster=Crassostrea gigas, Pacific razor=Siliqua patula, physiology, quatic vegetation, reproductive behavior, salinity, water temperature, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/v118rf35q}, author = {Lukas, Gerald and Gibson, Gary and Oregon. Fish Commission. Research Division} } @mastersthesis {28926, title = {The Effects of Temperature and Salinity on the Early Development of Adula californiensis (Pelecypoda-Mytilidae)}, year = {1970}, note = {Major professor was Jefferson J. Gonor. Masters thesis.}, month = {1970}, pages = {92 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = { Dept. of Oceanography}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, biological, bivalves, California datemussel=Adula californiensis, developmental stages, hydrology, molluscs, physiology, salinity data, theses, water temperature data, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/tt44pr704}, author = {Lough, Robert G.} } @article {28596, title = {Management of the Troll Salmon Fishery. Annual Report: July 1, 1967, to June 30, 1968}, year = {1968}, note = {October, 1968.}, keywords = {age composition, biological, catch statistics, Chetco River estuary, Columbia River estuary, commercial fisheries - salmon, Coos River estuary, fishes, general, hatchery salmonids, methodology, natural resource management, Pacific salmonids=Oncorhynchus species, statistical analysis, Yaquina Bay, zinc}, author = {Loeffel, Robert E. and Robert K McQueen and Oregon. Fish Commission} } @book {28466, title = {Estuaries}, series = {American Association for the Advancement of Science. Publication}, volume = {no.83}, year = {1967}, month = {1967}, publisher = {American Association for the Advancement of Science}, organization = {American Association for the Advancement of Science}, address = {Washington, D.C.}, keywords = {aquatic invertebrates, biological, chemical, commercial fisheries, community ecology, diatoms, estuarine dynamics, general, genetics, geological, human impacts, hydrology, methodology, nutrient cycles, physical, physiology, population biology, recreational fisheries, salinity, sediments, water pollution}, editor = {Lauff, George H.} } @book {28461, title = {Sediments of Yaquina Bay, Oregon}, series = {Estuaries [conference papers]}, volume = {83}, year = {1967}, note = {Excellent data maps. Many sampling locations - see page 230.}, month = {1967}, pages = {p.226-238}, publisher = {American Association for the Advancement of Science}, organization = {American Association for the Advancement of Science}, chapter = {p.226-238}, address = {Washington, D.C.}, keywords = {climate, coastal dunes, Elk City, estuarine dynamics, general ecosystem description, geological, hydrology, Idaho Flats, Oneatta Point, physical, precipitation, salinity, Sally{\textquoteright}s Bend, sediment data, Yaquina Bay, Yaquina Head, Yaquina River, Yaquina River Basin}, url = { }, author = {Kulm, Laverne D. and Byrne, John V.}, editor = {Lauff, George H. (ed.)} } @article {28391, title = {An investigation of the early stage of upwelling along the Oregon Coast}, journal = {Journal of Geophysical Research}, volume = {71}, year = {1966}, month = {1966}, pages = {p.1135-1140}, keywords = {climate, coastal upwelling, hydrology, physical}, author = {Smith, Robert L. and Pattullo, June G. and Lane, Robert K.} } @article {28131, title = {Recreational and Commercial Use Pattern for the Fish and Wildlife Resources of Yaquina Bay, Oregon}, year = {1963}, note = {Describes natural resource use in the Yaquina Bay area about 1963. Bay Crab, clam, oyster, salmon, cutthroat trout and bottomfish fisheries are discussed. Touches on jetty fishing, skin and scuba diving, offshore salmon fisheries, underutilized fisheries and waterfowl hunting.}, pages = {15 p.}, institution = {[Department of Fish and Game Management, Oregon State University]}, address = {[Corvallis, Or.]}, keywords = {birds, Butter clam = Saxidomus giganteus, cabezon = Scorpaenichthys marmoratus, Chinook salmon = Oncorhynchus tshawytscha, Coastal cutthroat trout = Oncorhynchus clarki clarki, Coho salmon = Oncorhynchus kisutch, commercial fisheries - salmon, Dungeness crab = Metacarcinus magister (Cancer magister), Gaper clam = Tresus nuttallii, Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), Green sturgeon = Acipenser medirostris, jacksmelt = Atherinopsis californiensisbiological, kelp greenling = Hexagrammos decagrammus, Kumamoto oyster = Crassostrea sikamea, Littleneck clam = Leukoma staminea, Nuttall cockle = Clinocardium nuttallii, recreational fisheries, recreational fisheries - grounfish, recreational fisheries - shellfish, Red rock crab = Cancer productus, salmon, shellfish, Softshell clam = Mya arenaria, Starry flounder = Platichthys stellatus, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/qj72p772z}, author = {Long, J. B. and Horton, Howard F.} } @mastersthesis {28086, title = {The Sea Breeze of Northwest Oregon and its Influence on Forestry Operations}, year = {1962}, note = {Major professor was Fred W. Decker. Doctoral dissertation. Excellent data.}, month = {June_1962}, pages = {216 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of General Science}, address = {Corvallis, Or.}, keywords = {air temperature data, climate, Eddyville, humidity data, light data, physical, terrestrial vegetation, theses, wind data, Yaquina River, Yaquina River Basin}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/2v23vx24w}, author = {Lowry, William P.} } @book {13411, title = {Lincoln County lore, from the Journal of Lieut. Theodore Talbot, U.S.A., on his journey through Lincoln County and along the Oregon coast in 1849}, series = {Publication (Lincoln County Historical Society (Lincoln County, Or.))}, volume = {no.1}, year = {1948}, note = {Journal of Lt. Theodore Talbot, describing a journey to Lincoln County to examine the "Alcea River and the country adjacent" in the summer of 1849. }, pages = {86 p.}, publisher = {Lincoln County Historical Society}, organization = {Lincoln County Historical Society}, address = {Newport, OR}, keywords = {Alsea Bay, forest fires, historical, Native Americans, Pacific smelt = Thaleichthys pacificus, Siletz River, terrestrial vegetation, Yaquina Bay}, isbn = {0960296808}, url = {https://ir.library.oregonstate.edu/concern/defaults/bz60cx72m}, author = {Talbot, Theodore and Lincoln County Historical Society,} } @article {27561, title = {An investigation of the sea cliff landslide [of March 30, 1943] at Newport, [Lincoln County,]Oregon}, year = {1943}, month = {[1943]}, institution = {Oregon Department of Geology and Mineral Industries}, address = {Portland, Or.}, keywords = {Agate Beach, coastal hazards, erosion, geology, landslides, paleosciences, sediments}, author = {Allen, John Eliot and Lowry, Wallace D.} } @article {27526, title = {Native Oyster Investigations of Yaquina Bay, Oregon. Progress Report II, Covering the Period July 4, 1939 to September 30, 1941}, year = {1941}, note = {This paper is a report on progress in studying ways to enhance the native Olympia oyster fishery in Yaquina Bay. It includes a valuable account of the history of the oyster industry in Yaquina Bay, and b/w photographs of the research project. Maps include the classic 1908 map of Yaquina Bay oyster grounds and 1939 maps showing channel depths from the entrance to the bay up to Toledo.}, pages = {153 p.}, institution = {Oregon Agricultural Experiment Station}, address = {Corvallis, OR}, keywords = {aquaculture, aquatic invertebrates, biological, bivalves, diking, dredging, eastern oyster=Crassostrea virginica, general ecosystem description, growth, habitat restoration, historical, human impacts, introduced species, life history information, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Pacific oyster=Crassostrea gigas, physical modifications, population biology, reproductive behavior, salinity data, water pollution, water temperature data, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/p5547r898}, author = {Dimick, Roland E. and England, George and Long, J. B.} } @article {27486, title = {A Progress Report of Investigation of the Native Oyster in Yaquina Bay, Oregon Covering the Period July 4 to September 15, 1939}, year = {1939}, note = {Poor quality copy. Original copy available at the Oregon State Library}, pages = {46 p.}, institution = {Oregon Agricultural Experiment Station}, address = {Corvallis, Or.}, keywords = {aquaculture, aquatic invertebrates, biological, bivalves, diking, dredging, eastern oyster=Crassostrea virginica, general ecosystem description, growth, habitat restoration, historical, human impacts, introduced species, life history information, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Pacific oyster=Crassostrea gigas, physical modifications, population biology, reproductive behavior, salinity data, water pollution, water temperature data, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/x346d475b}, author = {Dimick, Roland E. and Long, J. B.} } @article {27456, title = {Report on "Yaquina River": Investigation Sponsored by Oregon State Fish Commission, July, 1936}, year = {1936}, note = {Report on potential hatchery sites. Good descriptions of tributaries. Hand-drawn maps.}, month = {29 July 1936}, pages = {22 p.}, institution = {Oregon State Fish Commission}, keywords = {aquaculture, Big Elk Creek, depleted populations, Feagles Creek, Grant Creek, hatchery salmonids, hydrology, land ownership, Little Elk Creek, Lower Yaquina River, Mill Creek, Pacific salmonids=Oncorhynchus species, physical, Simpson Creek, Spout Creek, Thornton Creek, Upper Yaquina River, Wolf Creek}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/z890rt67k}, author = {Ledgerwood, Edgar and Reynolds, John} } @article {76416, title = {The halibut fisheries of Oregon and California}, journal = {Pacific Fisherman }, volume = {28}, year = {1930}, note = {Feature article. Describes the southern U.S. Pacific halibut fishery in 1930, a fishery in its extreme youth. {\textquotedblleft}Rumors exist of unexplored banks located a hundred miles off the coast, but to date no one has made an attempt to find them.{\textquotedblright} Known banks were easily fished out, and fishers supplemented their catches with red cod, ling cod, sablefish and sole. {\textquotedblleft}Of the ten vessels landing fish at Newport, four are owned in Portland and are operated exclusively from Oregon ports, while the remainder are Seattle-owned and operate on the Oregon banks during the summer months when the fish are most plentiful there.{\textquotedblright} (p.22) Describes difficulty crossing the bar in spring and fall and mentions the proposed jetty extension. Includes a bw photograph of halibut boats in Newport harbor (p.22)}, month = {1930, Nov}, pages = {p.22-24}, keywords = {commercial fisheries {\textendash} groundfish, Coos Bay, Eureka (Ca.), Humboldt Bay, industrial development, Marshfield (Or.), Newport (Or.), Pacific halibut = Hippoglossus stenolepis, Yaquina Bay}, author = {Lokken, Harold} }