@article {83192, title = {Automatic Identification System (AIS) data case study: vessel traffic through the Yaquina Bay breakwater at Newport, Oregon}, volume = {No.23-1}, year = {2023}, note = {Although there are two potential openings in the breakwater on the north of Yaquina Bay, there is no approved Federal channel that passes through the breakwater. There is interest in a possible passage through the breakwater, and the Portland District of the Army Corps of Engineers is interested in exploring this possibility. {\textquotedblleft}[S]taff were interested in historical vessel transits, with a special focus on isolating transits for the largest (i.e., longest) vessels, identified as vessels 80 feet or longer, currently utilizing the area inside the breakwater. The Automatic Identification System Analysis Package (AISAP) software . . . was used to analyze vessel traffic{\textquotedblright} (p.1). An interesting look at the movement of large vessels in the bay.}, month = {2023, Mar.}, pages = {8 p.}, institution = {U.S. Army Corps of Engineers. Engineer Research and Development Center}, address = {Vicksburg, MS}, keywords = {breakwater, harbors, navigation, ports, Sally{\textquoteright}s Bend, Yaquina Bay}, url = {https://erdc-library.erdc.dren.mil/jspui/handle/11681/46549 }, author = {Kress, Marin M.} } @article {83221, title = {Situation Analysis for Oregon{\textquoteright}s Emergent Seaweed Aquaculture Industry}, year = {2023}, note = {At present, seaweed aquaculture is an underdeveloped industry in Oregon. Pacific dulse is the only species cultivated today in the state. The industry has, however, great potential, and can provide significant ecological services by cleaning seawater and providing habitat for marine animals. There is potential for mitigating climate change by buffering acidic ocean water and sequestering carbon. It would be worthwhile to investigate possible products such as biofuels, fertilizer and animal feed. Possible negative impacts such as overharvesting of wild stock, lack of genetic diversity, and competition for nutrients should be explored, and a stronger regulatory environment is needed. This is a most interesting introduction to what could be a beneficial and profitable industry.}, pages = {35 p.}, institution = {The Nature Conservancy}, address = {Portland, Or.}, keywords = {algae, aquaculture, Bandon (Or.), Carbon sequestration, climate, environmental law and policy, Garibaldi (Or.), Newport (Or.), ocean acidification, Pacific dulse = Palmaria mollis, Port Orford (Or.), purple sea urchin = Strongylocentrotus purpuratus}, url = {https://seagrant.oregonstate.edu/sites/seagrant.oregonstate.edu/files/orseaweedsituationanalysis_final.pdf}, author = {Considine, Megan E. and Kirchner, Gway and Carter, Jena and Waters, Tiffany} } @article {83117, title = {Differential coastal uplift quantified by luminescence dating of marine terraces, central Cascadia forearc, Oregon}, journal = {Quaternary Science Reviews}, volume = {298}, number = {107853}, year = {2022}, note = {At Yaquina Bay, there are marine terraces north and south of the bay. Although these terraces were deposited at the same time, they now have different elevations. This fact implies differential displacement along a fault in Yaquina Bay. The authors report on a study using luminescence dating to help determine what is happening in this area. {\textquotedblleft}Our results confirm that Yaquina Bay has been active during the late Pleistocene, and it also appears that the fault has experienced significant variations in displacement over the last 125 kyrs, and that a significant amount of displacement accrued during a relatively short time period post-106 ka{\textquotedblright} (p.13, section 6.1, {\textquotedblleft}Faulting at Yaquina Bay{\textquotedblright}).}, month = {2022, Dec.15}, pages = {16 p.}, keywords = {coastal hazards, earthquakes, Faults, geology, paleosciences, tsunamis, Yaquina Bay}, doi = {https://doi.org/10.1016/j.quascirev.2022.107853 }, author = {McKenzie, K.A. and Kelsey, H.M. and Kirby, E. and Rittenour, T.M. and Furlong, K.P.} } @article {83104, title = {Estimating the value of threatened species abundance dynamics}, journal = {Journal of Environmental Economics and Management}, volume = {113}, number = {102639}, year = {2022}, note = {How much are people willing to pay for marginal increases in abundance of threatened species? This paper looks at the value the public places on Coho salmon. {\textquotedblleft}Results provide direct evidence that conservation activities that achieve immediate abundance gains for a threatened species (or prevent immediate losses) produce significantly higher benefits than activities that gradually achieve the same abundance gains.{\textquotedblright} (from the Abstract)}, pages = {15 p.}, keywords = {abundance, Coho salmon = Oncorhynchus kisutch, depleted populations, ecological values, economics, general, Oregon Coast}, doi = {https://doi.org/10.1016/j.jeem.2022.102639 }, author = {Lewis, David J. and Kling, David M. and Dundas, Steven J. and Lew, Daniel K.} } @article {83189, title = {Nonfishing impacts on essential fish habitat}, volume = {no.2022-01}, year = {2022}, note = {Many human activities that are not directly related to fishing can harm essential fish habitat. This publication looks at 19 different human activities that can damage essential fish habitat, from climate change to forest management to noise pollution, and more. The authors describe for each activity what is known to affect essential fish habitat, potential impacts, {\textquotedblleft}and provide proactive conservation measures designed to minimize or avoid them{\textquotedblright} (from the Plain Language Summary).}, month = {2022, Dec.}, pages = {258 p.}, institution = {National Marine Fisheries Service}, address = {Seattle, Wash.}, keywords = {agriculture, Alsea River, aquaculture, climate, dams, dredging, energy, general, industrial development, Industrial waste, logging, mining, Noise, oil spills, Oregon Coast, ports, Sewage, shipping, Yaquina River}, doi = {https://doi.org/10.25923/zxz1-m712}, url = {https://repository.library.noaa.gov/view/noaa/48083/noaa_48083_DS1.pdf }, author = {Kiffney, Peter and Thompson, Jamie and Blaud, Brianna and Hoberecht, Laura} } @article {83100, title = {Management of anadromous lampreys: Common threats, different approaches}, journal = {Journal of Great Lakes Research. Supplement}, volume = {47 }, number = {Sup.1 }, year = {2021}, note = {This review article summarizes what is known about the statuses of many lamprey species around the world. The usual suspects, primarily human activity and climate change get the blame for most population declines. Management of the Pacific lamprey is a bright spot, largely due to the efforts and advocacy of Native Americans. The Western river lamprey, on the other hand, suffers from inadequate research, which is needed in order to support conservation.}, month = {2021, Dec.}, pages = {S129-S146}, keywords = {Alsea River, Beaver Creek, climate, Cummins Creek, dams, depleted populations, human impacts, land use, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), River lamprey = Lampetra ayresi, Salmon River,, Siletz River, Siuslaw River, Tenmile Creek, Umpqua River, water use, Yachats River, Yaquina River}, doi = {https://doi.org/10.1016/j.jglr.2020.09.005 }, author = {Clemens, Benjamin J. and Arakawa, Hiroaki and Baker, Cindy and Coghian, Stephen and Kucheryavyy, Aleksandr and Lampman, Ralph and Lan{\c c}a, Maria Jo{\~a}o and Mateus, Catarina Sofia and Miller, Allison and Nazari, Hassan and Peque{\~n}o, Germ{\'a}n and Sutton, Trent M. and Yanai, Seiji} } @article {83114, title = {A maximum rupture model for the central and southern Cascadia subduction zone{\textemdash}reassessing ages for coastal evidence of megathrust earthquakes and tsunamis}, journal = {Quaternary Science Reviews}, volume = {261 }, number = {106922}, year = {2021}, note = {{\textquotedblleft}A new history of great earthquakes (and their tsunamis) for the central and southern Cascadia subduction zone shows more frequent (17 in the past 6700 yr) megathrust ruptures than previous coastal chronologies.{\textquotedblright} (from the Abstract) The article contains a link to supplementary data, also accessible through U.S. Geological Survey data releases.}, month = {2021, Jun.1}, pages = {19 p.}, keywords = {Alsea Bay, coastal hazards, Columbia River, Coos Bay, Coquille River, earthquakes, geology, mathematical modeling, Nehalem River, Nestucca Bay, Netarts Bay, paleosciences, Siletz Bay, Siuslaw River, tsunamis, Yaquina Bay}, doi = {https://doi.org/10.1016/j.quascirev.2021.106922 }, author = {Nelson, Alan R. and DuRoss. Christopher B. and Witter, Robert C. and Kelsey, Harvey M. and Engelhart, Simon E. and Mahan, Shannon A. and Gray, Harrison J. and Hawkes, Andrea D. and Horton, Benjamin P. and Padgett, Jason S.} } @booklet {83066, title = {Pacific Northwest Littoral Data}, year = {2021}, note = {{\textquotedblleft}This document contains five data tables in PDF file formats, that are used to characterize littoral subcell (beach, river mouth, and inner-shelf) conditions in the Pacific Northwest (PNW) region . . . These data have been compiled from pre-existing data sets . . . for the purposes of predicting possible beach erosion from potential future sea level rise (SLR) . . . The five data tables include Heavy-mineral tracers (Table 1), Heavy-mineral data (normalized) (Table 2), Subcell beach profile settings (Table 3), Subcell beach profile parameters (Table 4), and Subcell shelf profile parameters (Table 5){\textquotedblright} (p.1). The data supports the manuscript Peterson, C. D., Doyle, D. L., Rosenfeld, C. L., Kingen, K., (2020). Predicted Responses of Beaches, Bays, and Inner-Shelf Sand Supplies to Potential Sea Level Rise (0.5-1.0 m) in Three Small Littoral Subcells in the High-Wave-Energy Northern Oregon Coast, USA. Journal of Geography and Geology. v.12:.2. ( https://pdxscholar.library.pdx.edu/geology_fac/189/ )}, chapter = {2021, Mar.}, address = {Portland, Or.}, keywords = {Agate Beach, Alsea River, bathymetry, beach profiles, climate, Columbia River, Coos River, Coquille River, erosion, Florence, Or., heavy minerals, Lincoln City, Or., Nehalem River, Nestucca River, Netarts, Or., Newport, Or., Nye Beach, Otter Rock, Reedsport, Or., Rogue River, Salmon River, Sand Lake, sea level, Seal Rock, Siletz River, Siuslaw River, Sixes River, South Beach, Or., The Capes, Umpqua Jetty, Umpqua River, Whale Cove, Wilson River}, doi = {https://doi.org/10.15760/geology-data.01}, url = {https://pdxscholar.library.pdx.edu/geology_data/1/ }, author = {Peterson, Curt D. and Kingen, Kara E.P.}, editor = {Portland State University. Geology Department} } @article {83115, title = {Relationship between ocean ecosystem indicators and year class strength of the invasive European green crab (Carcinus maenas)}, journal = {Progress in Oceanography}, volume = {196}, number = {102618}, year = {2021}, note = {The link between invasive European green crab populations on the American west coast and warm oceanic conditions is well established. This article closely examines the link between ocean climate and these crab populations and probes aspects of this population{\textquoteright}s increase.}, month = {2021, Aug.}, pages = {8 p.}, keywords = {California Current, Coos Bay, Davidson current, El Nino, European green crab = Carcinus maenas, Grays Harbor, introduced species, mathematical modeling, Netarts Bay, Pacific Decadal Oscillation, population biology, Tillamook Bay, water temperature, Willapa Bay, Yaquina Bay}, doi = {https://doi.org/10.1016/j.pocean.2021.102618 }, author = {Yamada, Sylvia Behrens and Fisher, Jennifer L. and Kosro, P. Michael} } @article {83153, title = {Assessing the Feasibility of a Sea Otter Reintroduction to Oregon through a Coupled Natural-Human Lens}, year = {2019}, note = {This report is the product of a National Science Foundation grant designed to encourage interdisciplinary studies among graduate students. The authors assess various locations on the Oregon Coast for suitable sites for reintroducing sea otters. An earlier attempt to reintroduce sea otters from Alaska to Oregon failed, perhaps because the historic Oregon population was more closely related to California sea otters than to the Alaskan otters. Public opinion, possible conflicts and habitat suitability are considered.}, pages = {57 p.}, institution = {Oregon State University}, address = {Corvallis, Or.}, keywords = {archeology, Cape Blanco, commercial fisheries, genetics, habitats, human impacts, population biology, Port Orford, reintroduced species, Sea otter = Enhydra lutris, tourism, Umpqua River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/c821gs71d }, author = {Curran, Lorne S. and Kone, Dominique V. and Wickizer, Benjamin J.} } @article {83136, title = {Classification of Native Vegetation of Oregon - 2019}, year = {2019}, note = {{\textquotedblleft}This classification is an update of the 2004 classification of native vegetation of Oregon by Kagan, Christy, Murray and Titus. As before, this classification lists the native plant associations known to occur in Oregon, and includes both successional and climax vegetation types that were part of the presettlement landscape of Oregon and can still be found in the state. It serves as an index to the diversity, distribution and relative rarity of the state{\textquoteright}s native plant associations, and as a guide to their literature.{\textquotedblright} (from the introduction)}, pages = {109 p.}, institution = {Oregon Biodiversity Information Center}, address = {Portland, Or.}, keywords = {bibliography, depleted populations, species list, terrestrial vegetation, wetland vegetation}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/2r36v492k }, author = {Kagan, James S. and Brunner, Rachel L. and Christy, John A.} } @article {82621, title = {Climate vulnerability assessment for Pacific salmon and steelhead in the California Current Large Marine Ecosystem}, journal = {PLoS One}, volume = {14}, number = {7}, year = {2019}, note = {This article is a major scientific overview of the vulnerability of Pacific Coast anadromous salmonids to climate change. {\textquotedblleft}Nearly all listing units faced high exposures to projected increases in stream temperature, sea surface temperature, and ocean acidification. . . Anthropogenic factors, especially migration barriers, habitat degradation, and hatchery influence, have reduced the adaptive capacity of most steelhead and salmon populations. Enhancing adaptive capacity is essential to mitigate for the increasing threat of climate change. Collectively, these results provide a framework to support recovery planning that considers climate impacts on the majority of West Coast anadromous salmonids{\textquotedblright} (from the Abstract). Projections were made about Oregon coast coho salmon.}, pages = {e0217711}, edition = {2019, Jul. 24}, keywords = {Oregon Coast, Pacific salmonids = Oncorhynchus spp., Coho salmon = Oncorhynchus kisutch, climate change, depleted populations, ecosystem health, endangered species, habitats, hatcheries, human impacts, life history, ocean acidification, water temperatur}, doi = {https://doi.org/10.1371/journal.pone.0217711 }, url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0217711 }, author = {Crozier, Lisa G. and McClure, Michelle M. and Beechie, Tim and Bograd, Steven J. and Boughton, David A. and Carr, Mark and Cooney, Thomas D. and Dunham, Jason B. and Greene, Correigh M. and Haltuch, Melissa A. and Hazen, Elliott L. and Holzer, Damon M. and Huff, David O. and Johnson, Rachel C. and Jordan, Chris E. and Kaplan, Isaac C. and Lindley, Steven T. and Mantua, Nathan J. and Moyle, Peter B. and Myers, James M. and Nelson, Mark W. and Spence, Brian C. and Weitkamp, Laurie A. and Williams, Thomas H. and Willis-Norton, Ellen} } @mastersthesis {83239, title = {An Ecological Assessment of a Potential Sea Otter (Enhydra lutris) Reintroduction to the Oregon Coast}, year = {2019}, note = {This Master{\textquoteright}s thesis was written to address the concerns of groups working to bring sea otters back to Oregon. {\textquotedblleft}Managers seek improved understanding of the potential for coastal habitats to support sea otter populations, factors likely to affect reintroduction success, and how sea otters may change nearshore ecosystems if brought back. These uncertainties were addressed by adapting and applying a recently developed model of habitat-specific carrying capacity for southern sea otters to estimate spatial variation in potential sea otter abundance (at equilibrium) in Oregon. These predictions were spatially related to human activities to investigate potential human interactions{\textquotedblright} (from the Abstract) The major professor was Leigh G. Torres. }, pages = {82 p.}, school = {Oregon State University}, edition = {M.S.}, chapter = {College of Earth, Ocean and Atmospheric Sciences. Marine Resource Management Program}, address = {Corvallis, Or.}, keywords = {Blanco Reef, commercial fisheries - shellfish, demographics, economics, ecosystem health, environmental law and policy, Gold Beach (Or.), habitats, historical, human impacts, marine mammals, Newport (Or.), Orford Reef, Otter Rock Marine Reserve, population biology, Redfish Rocks Marine Reserve, Reintroductions, Sea otter = Enhydra lutris, Simpson Reef, Translocations}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/bv73c622c }, author = {Kone, Dominique V.} } @mastersthesis {83174, title = {The Influence of Microbial Communities on Spatiotemporal Elemental Cycling in Coastal Margins Revealed by Community- and Population-level Genomics and Proteomics}, year = {2019}, note = {If we want to understand carbon and nutrient cycling in our rivers and on our coastal margins, then we need to understand what is happening at the smallest levels, i.e., with microbes. This masterful doctoral dissertation examines the roles microbes play in carbon and nutrient cycling in Yaquina Bay, the Yaquina River plume, and nearby coastal margins. The author generated and interpreted several datasets for this work. The major professor was Ryan S. Mueller.}, pages = {242 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Microbiology}, address = {Corvallis, Or.}, keywords = {bacteria, carbon, Microbes, nitrogen, nutrient cycles, Phages, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/7d279004w }, author = {Kieft, Brandon P.} } @article {82881, title = {Everywhere you look, everywhere you go, there{\textquoteright}s an estuary invaded by the red seaweed Gracilaria vermiculophylla (Ohmi) Papenfuss, 1967}, journal = {BioInvasions Records }, volume = {7}, number = {4}, year = {2018}, note = {The red algae Graciliara vermiculophylla is a native of the northwestern Pacific region. Over the course of the last century, it has successfully invaded almost every temperate estuary on the other side of the ocean, in North America. This aggressive invader changes habitats, particularly by populating habitats that were formerly lacking algal cover. In this paper, the authors report on a survey of 61 sites, from Alaska to San Diego, and recorded 33 new sites where the species was found. {\textquotedblleft}Our study fills in the significant gaps in the distribution of G. vermiculophylla in North America, and, as such, will be an important contribution to future studies on the ecological and evolutionary consequences of this widespread marine invasion along this coastline.{\textquotedblright} (from the Abstract)}, month = {2018, Nov.}, pages = {p.343-355}, keywords = {Gracilaria vermiculophylla, Tillamook Bay, Netarts Bay, Yaquina Bay, Alsea Bay, Algae, Genetics, Geographic distribution, Introduced species, Life history information}, doi = {https://doi.org/10.3391/bir.2018.7.4.01 }, url = {https://www.reabic.net/journals/bir/2018/4/BIR_2018_KruegerHadfield_etal.pdf }, author = {Krueger-Hadfield, Stacy A. and Stephens, Tiffany A. and Ryan, Will H. and Heiser, Sabrina} } @article {83011, title = {Expansion and systematics redefinition of the most threatened freshwater mussel family, the Margaritiferidae}, journal = {Molecular Phylogenetics and Evolution}, volume = {127}, year = {2018}, note = {In this article, the evolution, distribution and taxonomy of the freshwater pearl mussel family, Margaritiferidae, is explored. Fossils as well as genetic data were used to model the diversification of this family. Maps, charts.}, month = {2018, Oct.}, pages = {p.98-118}, keywords = {aquatic invertebrates, bivalves, evolution, general, genetics, geographic distribution, molluscs, morphology, mussels, phylogeny, taxonomy}, doi = {https://doi.org/10.1016/j.ympev.2018.04.041 }, author = {Lopes-Lima, Manuel and Bolotov, Ivan N. and Do, Van Tu and Aldridge, David C. and Fonseca, Miguel M. and Gan, Han Ming and Gofarov, Mikhail Y. and Kondakov, Alexander V. and Pri{\'e}, Vincent and Sousa, Ronaldo and Varandas, Simone and Vikhrev, Ilya V. and Teixeira, Amilcar and Wu, Rui-Wen and Wu, Xiaoping and Zieritz, Alexandra and Froufe, Elsa and Bogan, Arthur E.} } @article {80471, title = {Benthic Marine Algae on Japanese Tsunami Marine Debris {\textendash} a Morphological Documentation of the Species. Part 2 {\textendash} The Brown Algae}, volume = {no.17-002}, year = {2017}, note = {On March 11, 2011, the great Tohoku earthquake shook Japan. The subsequent tsunami swept approximately 5 million tons of debris into the Pacific Ocean, some of which made its way across the Pacific and washed up on the North American West Coast. The debris carried hundreds of species, a surprising number of which survived the trip. In order to understand the potential for biological invasions, it was necessary to document these species. This report describes sampling and genetic sequencing of marine algae found on 42 items that washed up between June, 2012 and July, 2016. It is in three parts. Part 1 gives an overview of the project and describes the red algae, Part 2 covers the brown algae and Part 3 gives the green algae and cyanobacteria. Beautifully illustrated with photographs, microphotographs and drawings.}, pages = {61 p.}, institution = {Oregon State University Libraries. The Scholars Archive,}, address = {Corvallis, Or.}, keywords = {Tillamook Spit, Agate Beach, Nye Beach, Seal Rock, Waldport (Or.), Yachats (Or.), Umpqua River Estuary, Coos Bay, Sixes River Estuary, coastal hazards, earthquakes, tsunamis, introduced species, algae, taxonomy, morphology, genetics, species list}, doi = {http://dx.doi.org/10.5399/osu/1111 }, url = {https://ir.library.oregonstate.edu/concern/articles/8049g9979}, author = {Hansen, Gayle I. and Hanyuda, Takeaki and Kawai, Hiroshi} } @article {80476, title = {Benthic Marine Algae on Japanese Tsunami Marine Debris {\textendash} a Morphological Documentation of the Species. Part 3. The Green Algae and Cyanobacteria.}, volume = {no.17-003}, year = {2017}, note = {On March 11, 2011, the great Tohoku earthquake shook Japan. The subsequent tsunami swept approximately 5 million tons of debris into the Pacific Ocean, some of which made its way across the Pacific and washed up on the North American West Coast. The debris carried hundreds of species, a surprising number of which survived the trip. In order to understand the potential for biological invasions, it was necessary to document these species. This report describes sampling and genetic sequencing of marine algae found on 42 items that washed up between June, 2012 and July, 2016. It is in three parts. Part 1 gives an overview of the project and describes the red algae, Part 2 covers the brown algae and Part 3 gives the green algae and cyanobacteria. Beautifully illustrated with photographs, microphotographs and drawings.}, pages = {43 p.}, institution = {Oregon State University Libraries. The Scholars Archive,}, address = {Corvallis, Or.}, keywords = {Tillamook Spit, Agate Beach, Nye Beach, Seal Rock, Waldport (Or.), Yachats (Or.), Umpqua River Estuary, Coos Bay, Sixes River Estuary, coastal hazards, earthquakes, tsunamis, introduced species, algae, taxonomy, morphology, genetics, species list}, doi = {http://dx.doi.org/10.5399/osu/1112 }, url = {https://ir.library.oregonstate.edu/concern/defaults/db78th95q}, author = {Hansen, Gayle I. and Hanyuda, Takeaki and Kawai, Hiroshi} } @article {80466, title = {Benthic Marine Algae on Japanese Tsunami Marine Debris {\textendash} a Morphological Documentation of the Species. Part 1 {\textendash} The Tsunami Event, the Project Overview, and the Red Algae}, volume = {no.17-001}, year = {2017}, note = {On March 11, 2011, the great Tohoku earthquake shook Japan. The subsequent tsunami swept approximately 5 million tons of debris into the Pacific Ocean, some of which made its way across the Pacific and washed up on the North American West Coast. The debris carried hundreds of species, a surprising number of which survived the trip. In order to understand the potential for biological invasions, it was necessary to document these species. This report describes sampling and genetic sequencing of marine algae found on 42 items that washed up between June, 2012 and July, 2016. It is in three parts. Part 1 gives an overview of the project and describes the red algae, Part 2 covers the brown algae and Part 3 gives the green algae and cyanobacteria. Beautifully illustrated with photographs, microphotographs and drawings.}, pages = {50 p.}, institution = {Oregon State University Libraries. The Scholars Archive,}, address = {Corvallis, Or.}, keywords = {Tillamook Spit, Agate Beach, Nye Beach, Seal Rock, Waldport (Or.), Yachats (Or.), Umpqua River Estuary, Coos Bay, Sixes River Estuary, coastal hazards, earthquakes, tsunamis, introduced species, algae, taxonomy, morphology, genetics, species list}, doi = {http://dx.doi.org/10.5399/osu/1110 }, url = {https://ir.library.oregonstate.edu/concern/defaults/cr56n576w}, author = {Hansen, Gayle I. and Hanyuda, Takeaki and Kawai, Hiroshi} } @article {80351, title = {Demographic and genetic connectivity: the role and consequences of reproduction, dispersal and recruitment in seagrasses}, journal = {Biological Reviews}, volume = {92}, year = {2017}, note = {The valuable ecological roles provided by seagrasses are well known. Population connectivity in seagrasses, however, is less well understood. {\textquotedblleft}Accurate estimation of connectivity among populations is fundamental for determining the drivers of population resilience, genetic diversity, adaptation and speciation{\textquotedblright} (from the Abstract). This article provides a review about what is known about this aspect of seagrass ecology around the world, and includes a study of eelgrass in Yaquina Bay. The authors point out what is known, gaps in knowledge, and potential directions for future research. }, pages = {p.921-938}, keywords = {aquatic vegetation, eelgrass = Zostera marina, genetics, recruitment, reproductive biology, Yaquina Bay}, doi = {doi: 10.1111/brv.12261 }, author = {Kendrick, Gary A. and Orth, Robert J. and Statton, John and Hovey, Renae and Ruiz Montoya, Leonardo and Lowe, Ryan J. and Krauss, Siegfried L. and Sinclair, Elizabeth A.} } @article {80451, title = {Trends in the Pacific herring (Clupea pallasii) metapopulation in the California Current Ecosystem}, journal = {California Cooperative Oceanic Fisheries Investigations, Progress Report}, volume = {58}, year = {2017}, note = {This paper examines population trends for Pacific herring on the West Coast. The authors find that overall populations have been declining since the 1980s, although there are areas such as Yaquina Bay that have not seen large declines. The data hints at cyclic fluctuations in population, but more study is needed. {\textquotedblleft}We do not understand the drivers of changes occurring in the herring metapopulation, nor have the consequences to upper trophic levels in this marine ecosystem been investigated comprehensively. Expansion of current monitoring and new directed research on relationships between herring and the environment and higher level consumers is therefore warranted and essential.{\textquotedblright} (p.11)}, pages = {p.1-18}, keywords = {abundance, climate, depleted populations, geographic distribution, Pacific Decadal Oscillation, Pacific herring = Clupea pallasii, population biology, statistical analysis, Yaquina Bay}, url = {https://calcofi.com/publications/calcofireports/v58/Vol58-Thompson_pages_77-94.pdf}, author = {Thompson, Sarah Ann and Sydeman, William J. and Thayer, Julie A. and Weinstein, Anna and Krieger, Katherine L. and Hay, Doug} } @article {80506, title = {A new species of Halolaelapidae (Acari: Mesostigmata: Rhodacaroidea) from beach wrack in Yaquina Bay, Oregon, USA, with comments on opisthonotal plasticity and cribral development in the family}, journal = {Journal of Natural History}, volume = {50}, year = {2016}, note = {This article describes a new species of mite, Halolaelaps hatfieldi, found in the summer of 2013 on decomposing sea lettuce ()Ulva)) and eelgrass in a backwater of Yaquina Bay near the Hatfield Marine Science Center. The species is described through different life phases and diagnostic characteristics are given. The author discusses certain anatomical features and hypotheses about their possible functions. The species is named after the Hatfield Marine Science Center.}, pages = {p. 1797-1812}, keywords = {arthropods, eelgrass = Zostera marina, Halolaelaps hatfieldi, Hatfield Marine Science Center, morphology, taxonomy, Ulva species, Yaquina Bay}, doi = {http://dx.doi.org/10.1080/00222933.2016.1170904 }, author = {Krantz, G. W.} } @article {76896, title = {Duration of temperature exposure controls growth of Zostera japonica: Implications for zonation and colonization}, journal = {Journal of Experimental Marine Biology and Ecology}, volume = {464}, year = {2015}, note = {This study looks at the distinct zonation of the native eelgrass (Z. marina) and the introduced Japanese eelgrass (Z. japonica). None of the {\textquotedblleft}usual suspects{\textquotedblright} (dessication tolerance, light limitation, interspecific competition) adequately explain the different estuarine zones occupied by the two species. The authors {\textquotedblleft}hypothesize that differences in thermal optima may be responsible for the observed zonation patterns.{\textquotedblright} (p.68) This interesting paper has important implications for the possible future spread of Japanese eelgrass.}, month = {2015, Mar.}, pages = {p.68{\textendash}74}, keywords = {eelgrass = Zostera marina, Idaho Point, introduced species, Japanese eelgrass = Zostera japonica, Sally{\textquoteright}s Bend, temperature, Yaquina Bay, zonal distribution}, doi = {doi:10.1016/j.jembe.2014.12.015}, author = {Kaldy, James E. and Shafer, Deborah J. and Magoun, A. Dale} } @article {77216, title = {Effects of temperature, salinity and seed age on induction of Zostera japonica germination in North America, USA}, journal = {Aquatic Botany}, volume = {126}, year = {2015}, note = {This paper examines seed germination in the invasive Japanese eelgrass. {\textquotedblleft}Our results suggest that seasonal pulses of cold temperatures coupled with low salinity may stimulate Z. japonica seed germination. . . However, prolonged exposure to freshwater is likely to result in increased incidence of rotten seeds and poor subsequent seedling survival. Consequently, it would appear that optimum conditions for Z.japonica seed germination consist of cold temperature stratification with brief pulses of low salinity (<10) conditions followed by a gradual return to higher salinity conditions that favor the development of seedlings and adult plants. This is similar to estuarine salinity dynamics following significant storm events during the wet season in Oregon coastal systems.{\textquotedblright} (p.77-78)}, month = {2015, Oct.}, pages = {p.73{\textendash}79}, keywords = {fecundity, germination. Introduced species, Japanese eelgrass = Zostera japonica, reproduction, salinity, water temperature, Yaquina Bay}, doi = {doi:10.1016/j.aquabot.2015.06.006}, author = {Kaldy, James E. and Shafer, Deborah J. and Ailstock, M. Stephen and Magoun, A. Dale} } @article {76911, title = {A sea-level database for the Pacific coast of central North America}, journal = {Quaternary Science Reviews}, volume = {113}, year = {2015}, note = {When the glaciers melted at the end of the last ice age, sea levels along the Pacific Coast of North America did not rise uniformly. Areas where the earth had been pressed down by the weight of glaciers saw relatively little sea level rise, as the land rebounded when the weight was removed. Sites further away from the great glaciers saw higher sea levels. In this paper, the authors describe a database of sea levels and reference points for the last 16,000 years in our area. Appendices give reference points, descriptions, and referenced publications. Interestingly, Alsea Bay in Appendix 1 is spelled {\textquotedblleft}Alsey Bay.{\textquotedblright}}, month = {2015, Apr. 1}, pages = {p.78-92}, keywords = {Alsea Bay, Coos Bay, Coquille River, geology, Glaciation, Nehalem River, Nestucca Bay, Netarts Bay, paleosciences, Salmon River, sea level, Siletz Bay, Siuslaw River estuary, Yaquina Bay}, doi = {10.1016/j.quascirev.2014.12.001}, author = {Engelhart, Simon E. and Vacchi, Matteo and Horton, Benjamin P. and Nelson, Alan R. and Kopp, Robert E.} } @article {76891, title = {Stratigraphic and microfossil evidence for a 4500-year history of Cascadia subduction zone earthquakes and tsunamis at Yaquina River estuary, Oregon, USA}, journal = {Geological Society of America Bulletin, }, volume = {127}, number = {1-2}, year = {2015}, note = {There{\textquoteright}s a freshwater spruce swamp buried near the northeastern shore of Sally{\textquoteright}s Bend in Yaquina Bay. Sediment cores show 8-10 different soil sequences buried there, going back about 4500 years before the present. Each sequence terminates abruptly with a sandy deposit and then over 10 centimeters of mud. The authors of this paper infer that {\textquotedblleft}each buried soil represents a Cascadia subduction zone earthquake{\textellipsis}{\textquotedblright} (from the Abstract) The article includes maps of the bay, and show locations of previous research by other scientists. The Yaquina Bay sequence is compared with sequences from other Oregon estuaries.}, pages = {p.211-226}, keywords = {Alsea Bay, Cannon Beach, coastal hazards, Coos Bay, Coquille River, earthquakes, geology, Netarts Bay, paleosciences, Sally{\textquoteright}s Bend, Salmon River, sediments, Sixes River, South Slough, tsunamis, Yaquina Bay, Yaquina River Estuary}, doi = {10.1130/B31074.1}, author = {Graehl, Nicholas A. and Kelsey, Harvey M. and Witter, Robert C. and Hemphill-Haley, Eileen and Engelhart, Simon E.} } @article {77101, title = {Thermogeographic variation in body size of Carcinus maenas, the European green crab}, journal = {Marine Biology}, volume = {162}, year = {2015}, note = {For many ectotherms, or {\textquotedblleft}cold-blooded{\textquotedblright} animals, a warmer environment leads to a smaller body size, and these animals grow larger in cooler temperatures. {\textquotedblleft}Here, we test whether biogeographic differences in size (carapace width) exist for a recent invasion of the non-native European green crab, Carcinus maenas, along the west coast of North America. . . Forces that shape the phenotypic trajectory of species may play an important role in both invasion dynamics and subsequent ecological impacts.{\textquotedblright} (from the Abstract)}, pages = {p.1625{\textendash}1635}, keywords = {aquatic invertebrates, Bodega Bay, Coos Bay, crustaceans, decapods, Elkhorn Slough, European green crab = Carcinus maenas, Gales Passage, introduced species, Netarts Bay, phenology, Pipestem Inlet, San Francisco Bay, Seadrift Lagoon, temperature, Tillamook Bay, Tomales Bay, Yaquina Bay}, doi = {https://doi.org/10.1007/s00227-015-2698-5}, author = {Kelley, Amanda L. and de Rivera, Catherine E. and Grosholz, Edwin D. and Ruiz, Gregory M. and Yamada, Sylvia Behrens and Gillespie, Graham} } @article {54801, title = {Comparison of photosynthetic characteristics of the seagrass congeners Zostera marina L. and Zostera japonica Ascher. \& Graeb.}, journal = {Aquatic Botany }, volume = {112}, year = {2014}, note = {{\textquotedblleft}On the Pacific coast of North America two seagrass species in the genus Zostera co-exist; the native species, Zostera marina, and an introduced species, Zostera japonica. These two species typically occupy separate tidal elevations, with Z. marina occupying the lower intertidal and shallow subtidal zones, and Z. japonica occupying the mid- to upper intertidal zone. This study was designed to compare the photosynthetic characteristics of Z. japonica and Z. marina after exposure to high and low light. . . . {\textquotedblleft}}, month = {2014, Jan.}, pages = {p.91-97}, keywords = {aquatic plants, carbon, eelgrass = Zostera marina, habitats, Idaho Flats, introduced species, Japanese eelgrass = Zostera japonica, natural resource management, oxygen, Yaquina Bay, zonal distribution}, doi = {10.1016/j.aquabot.2013.09.002}, author = {Shafer, Deborah J. and Kaldy, James E.} } @article {54881, title = {Effect of temperature and nutrient manipulations on eelgrass Zostera marina L. from the Pacific Northwest, USA}, journal = {Journal of Experimental Marine Biology and Ecology }, volume = {453}, year = {2014}, note = {"Global climate change will impact the three dominate drivers of estuarine seagrass productivity, temperature, light and nutrients. The response of Pacific Northwest (PNW) Z. marina to interactive effects of temperature and nitrogen conditions was experimentally evaluated. . . . Temperature played a dominant role controlling Z. marina response to nutrients; nitrogen toxicity was not observed, and in general the effects of temperature and nutrients were not synergistic. This work highlights the complex nature of Z. marina response to environmental conditions; additional multifactor experiments will be required to tease apart these interactions." (from the Abstract)}, month = {2014, Apr.}, pages = {p.108{\textendash}115}, keywords = {climate change, eelgrass = Zostera marina, nitrate-nitrite, nitrogen, nitrous oxide, nutrients, primary production, temperature, Yaquina Bay}, doi = {10.1016/j.jembe.2013.12.020}, author = {Kaldy, James E.} } @article {80231, title = {An Inventory and Classification of U.S. West Coast Estuaries}, year = {2014}, note = {{\textquotedblleft}To support restoration, enhancement and conservation of the ecosystem values of U.S. West Coast estuaries, we need first to inventory and classify those estuarine systems using a common scheme. Previous efforts have noted this need and responded with inventories, assessments and classifications of estuaries along the West Coast, but generally only for a subset, and often focused on larger estuaries.{\textquotedblright} This document provides classification data for 691 estuaries in Washington, Oregon and California.}, pages = {81 p.}, institution = {The Nature Conservancy}, address = {Arlington, Va. }, keywords = {Alsea Bay, Chetco River estuary, Columbia River estuary, Coos Bay, Coquille River estuary, Devil{\textquoteright}s Lake, Depoe Bay, Little Creek, Beaver Creek, Rock Creek, Big Creek, Yachats River, Tenmile Creek, Siltcoos River, Tahkenitch Creek, Necanicum River estuar}, url = {https://www.scienceforconservation.org/assets/downloads/West-Coast-Estuary-Inventory-2014.pdf}, author = {Heady, Walter N. and O{\textquoteright}Connor, Kevin and Kassakian, Jennifer and Doiron, Kate and Endris, Charles and Hudgens, Daniel and Clark, Ross P. and Carter, Jena and Gleason, Mary G.} } @article {54876, title = {Records of trace metals in sediments from the Oregon shelf and slope: Investigating the occurrence of hypoxia over the past several thousand years}, journal = {Chemical Geology }, volume = {382}, year = {2014}, note = {In recent years, strong coastal winds have caused strong upwelling events, so strong that a layer of low-oxygen seawater has been brought closer to the surface, leading to mass die-offs of marine life, and affecting estuarine waters as well. A current question about these hypoxic events has to do with whether or not they are related to climate change. A look at the history of the region is therefore called for. {\textquotedblleft}A record of past hypoxia occurrence frequency would help distinguish human-induced causes from those related to natural climate changes. . . . Determining trends in trace metal abundances can serve as an indicator for changes in oxygenation conditions over time.{\textquotedblright} (p.33) The authors look at trace metals in sediments from the Yaquina, Alsea and Siuslaw Rivers and consider other factors possibly influencing their data. {\textquotedblleft}Supplementary data to this article can be found online at http://dx.doi.org/10.1016/j.chemgeo.2014.05.029 .{\textquotedblright} (p.42)}, month = {2014, Aug.29}, pages = {p.32{\textendash}43}, keywords = {Alsea Bay, chemistry, climate change, dissolved oxygen, hypoxia, paleosciences, sediments, Siuslaw Bay, Trace metals, winds, Yaquina Bay}, doi = {10.1016/j.chemgeo.2014.05.029}, author = {Erhardt, Andrea M. and Reimers, Clare E. and Kadko, David and Paytan, Adina} } @article {52376, title = {Science and management of the introduced seagrass Zostera japonica in North America}, journal = {Environmental Management }, volume = {53}, year = {2014}, note = {The Pacific Coast of North America is home to two species of eelgrass: the native Zostera marina, and the introduced Zostera japonica. This review looks at the two species, which are managed very differently in different parts of the West Coast. Should the invader be driven out and destroyed? Should it be ignored? The authors identify gaps in knowledge that limit resource managers{\textquoteright} ability to decide, and make recommendations for management and future research. }, month = {2014, Jan.}, pages = {p.147-162}, keywords = {Coos Bay, Coquille River estuary, eelgrass = Zostera marina, geographic distribution, habitats, introduced species, Japanese eelgrass = Zostera japonica, natural resource management, Netarts Bay, Tillamook Bay, Yaquina Bay}, doi = {10.1007/s00267-013-0172-z}, author = {Shafer, Deborah J. and Kaldy, James E. and Gaeckle, Jeffrey L.} } @article {49771, title = {In situ13C tracer experiments elucidate carbon translocation rates and allocation patterns in eelgrass Zostera marina}, journal = {Marine Ecology Progress Series}, volume = {487}, year = {2013}, note = {In this project, native seagrass was studied in summer and in winter using carbon-13 as a tracer to monitor changes in carbon uptake. {\textquotedblleft}The results provide important estimates of carbon uptake and translocation that can be used to better understand whole plant carbon budgets as well as the transfer of seagrass-derived carbon to other trophic communities.{\textquotedblright} (from the Abstract)}, pages = {p.27-39}, keywords = {carbon, eelgrass = Zostera marina, isotopes, Yaquina Bay}, doi = {10.3354/meps10354}, url = {https://www.int-res.com/articles/meps2013/487/m487p027.pdf}, author = {Kaldy, James E. and Brown, Cheryl A. and Andersen, Christian P.} } @article {77361, title = {NorWeST Stream Temp: Regional Database and Modeled Stream Temperatures [web page]}, year = {2013}, note = {This website gives water temperature data coupled with climate scenarios for western U.S. streams. Hundreds of biologists and hydrologists contributed to the temperature database. The database contains over 200,000,000 hourly stream temperature readings at more than 20,000 stream sites. The data were used to develop 36 historical and future climate scenarios at 1-kilometer resolution for over 1,000,000 stream kilometers. The website includes an interactive stream temperature viewer.}, publisher = {U.S. Rocky Mountain Research Station. Air, Water \& Aquatic Environments Program}, keywords = {Oregon, Pacific Northwest, Pacific Southwest, Intermountain West, water temperature, climate, environmental monitoring, mathematical modeling}, url = {https://www.fs.usda.gov/rm/boise/AWAE/projects/NorWeST.html}, author = {Isaak, D. J. and Wenger, S. J. and Peterson, E. E. and Ver Hoef, J. M. and Hostetler, S. and Luce, C. H. and Dunham, J. B. and Kershner, J. and Roper, B. B. and Nagel, D. and Horan, D. and Chandler, G. and Parkes, S. and Wollrab, S. and U.S. Rocky Mountain Research Station. Air Water \& Aquatic Environments Program} } @article {83285, title = {Sediment diatom species and community response to nitrogen addition in Oregon (USA) estuarine tidal wetlands}, journal = {Wetlands}, volume = {32}, number = {6}, year = {2012}, note = {Tested responses of sediment diatom communities in tidal wetlands of Yaquina Bay to nitrogen addition in the summers of 2009 and 2010. Identified 88 diatom taxa in the area. The four individual plots showed high species richness, of about 32-42 different species per plot. A strong response to nitrogen addition was found. Suggests that {\textquotedblleft}the sediment diatom community is a strong candidate for use as an aquatic bioassessment tool in tidal wetlands{\textellipsis}{\textquotedblright} (p.1029) }, month = {2012, Dec.}, pages = {p.1023-1031}, keywords = {algae, Amphora spp., aquatic vegetation, Cocconeis placentula, diatoms, fertilizers, Hatfield Marine Science Center, Idaho Point, nitrogen, Planothidium delicatulum, Sally{\textquoteright}s Bend, salt marsh, Saltgrass = Distichlis spicata, Saltwort = Sarcocornia virginica, wetlands, Yaquina Bay}, doi = {https://doi.org/10.1007/s13157-012-0332-6}, author = {Hankin, Shanon L. and Weilhoefer, Christine L. and Kaldy, James E. and DeWitt, Theodore H.} } @inbook {36371, title = {U.S. Pacific Northwest coastal hazards: tectonic and climate controls}, booktitle = {Coastal Hazards}, series = {Coastal Research Library}, volume = {6}, year = {2012}, note = {This is a comprehensive, up-to-date and important discussion of coastal hazards. There{\textquoteright}s an excellent discussion of historic problems, a good look at current issues, and a chilling discussion of the implications of rising sea levels and climate change. Charts, b+w and color photographs. Anyone considering purchasing property at the coast should read this first.}, publisher = {Springer Science Media}, organization = {Springer Science Media}, chapter = {Chapter 21}, address = {Dordrecht Netherlands}, keywords = {Alsea Bay, Alsea Spit, Bayocean Spit, Cape Lookout State Park, climate change, coastal hazards, Columbia River, dunes, earthquakes, El Nino, erosion, flooding, geology, Gleneden Beach, historical, jetties, Lincoln City (Or.), Lincoln City Littoral Cell, minerals, Neskowin (Or.), Nestucca River, Nestucca Spit, Netarts Bay, Netarts Spit, Newport (Or.), Pacific City (Or.), Rockaway (Or.), sea level, sediments, Siletz Bay, Siletz Spit, tidal data, Tillamook Bay, tsunamis, wave heights, Willapa Bay, Yaquina Bay}, isbn = { 9789400752344}, doi = {10.1007/978-94-007-5234-4}, author = {Komar, Paul D. and Allan, Jonathan C. and Ruggiero, Peter} } @article {83286, title = {Is the collapse of mud shrimp (Upogebia pugettensis) populations along the Pacific Coast of North America caused by outbreaks of a previously unknown bopyrid isopod parasite (Orthione griffenis)?}, journal = {Estuaries and Coasts}, volume = {34}, number = {2}, year = {2011}, note = {{\textquotedblleft}A dramatic increase in prevalence of the recently discovered bopyrid isopod parasite, Orthione griffenis, likely introduced in the 1980s from Asia to the Pacific coast of North America, coincided with the 2002 collapse of a population of its burrowing mud shrimp host, Upogebia pugettensis, in Willapa Bay, Washington that had been stable since monitoring began in 1988. An examination of whether O. griffenis infections were sufficient to cause this decline and other recently noted U. pugettensis population collapses in Pacific Coast estuaries was conducted.{\textquotedblright} (from the Abstract)}, pages = {336-350}, keywords = {aquatic invertebrates, crustaceans, depleted populations, Idaho Flats, Mud shrimp = Upogebia pugettensis, Orthione griffenis, parasites, Tillamook Bay, Willapa Bay, Yaquina Bay}, doi = {10.1007/s12237-010-9316-z}, author = {Dumbauld, Brett R. and Chapman, John W. and Torchin, Mark E. and Kuris, Armand M.} } @article {82481, title = {A Conservation Assessment of West Coast (USA) Estuaries}, year = {2011}, note = {{\textquotedblleft}Funded by: The David and Lucile Packard Foundation{\textquotedblright} {\textquotedblleft}This assessment outlines an enhanced planning approach for West Coast estuaries that incorporates an evaluation of the regional context for estuarine conservation and recommends an approach to site-scale planning with more focus on ecological processes and functions.{\textquotedblright} (p.1) {\textquotedblleft}A hierarchical classification system was developed for West Coast estuaries that identified three regions (based on climate, latitude, and oceanography) and four estuary types distinguished by the relative degree of influence of the hydrodynamic forcing mechanisms of waves, tides, and rivers.{\textquotedblright} (p.2)}, pages = {65 p.}, institution = {The Nature Conservancy}, address = {Arlington, Va. }, keywords = {Agriculture, Alsea Bay, estuarine dynamics, habitats, human impacts, hydrology, land ownership, land use, logging, mathematical modeling, Netarts Bay, Salmon River, Siletz Bay, Siuslaw River, Tillamook Bay, Umpqua River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/defaults/1r66j546d}, author = {Gleason, Mary G. and Newkirk, Sarah and Merrifield, Matthew S. and Howard, Jeanette and Cox, Robin and Webb, Megan and Koepcke, Jennifer and Stranko, Brian and Taylor, Bethany and Beck, Michael W. and Fuller, Roger and Dye, Paul and Vander Schaaf, Dick and Carter, Jena} } @article {34461, title = {Sea level variations along the U.S. Pacific Northwest Coast: tectonic and climate controls}, journal = {Journal of Coastal Research}, volume = {27}, number = {5}, year = {2011}, note = {"Analyses of the progressive multidecadal trends and climate-controlled annual variations in mean sea levels are presented for nine tide-gauge stations along the coast of the U.S. Pacific Northwest: Washington, Oregon, and Northern California. The trends in relative sea levels are strongly affected by the tectonics of this region..." The two Oregon sites are Yaquina and Coos bays. Tectonic processes such as subsidence and uplift can affect trends in relative sea levels. In the Yaquina Bay area, the land is slowly sinking, and the area has seen more sea level rise than an area such as Neah Bay, where the land is rising. Significant climate events such as El Nino are noted. This work has shown a trend for progressively higher wave heights in large storms, and the size of the largest waves is increasing at the highest rate, which has significant implications for coastal erosion.}, pages = {p.808-823}, keywords = {coastal hazards, Coos Bay, El Nino, erosion, sea level, Yaquina Bay}, doi = {10.2112/JCOASTRES-D-10-000116.1}, author = {Komar, Paul D. and Allan, Jonathan and Ruggiero, Peter} } @inbook {51326, title = {Impacts of climate change on Oregon{\textquoteright}s coasts and estuaries}, booktitle = {Oregon Climate Assessment Report}, year = {2010}, note = {This is Chapter 6 of the Oregon Climate Assessment Report. Predicts {\textquotedblleft}Increased winter{\textendash}early spring flow of coastal rivers and creeks and reduced flow during summer{\textquotedblright} for the Umpqua River (p.242)}, pages = {p.211-268}, publisher = {Oregon State University. College of Oceanic and Atmospheric Sciences. Oregon Climate Change Research Institute,}, organization = {Oregon State University. College of Oceanic and Atmospheric Sciences. Oregon Climate Change Research Institute,}, address = {Corvallis, Or.}, keywords = {Alsea Bay, Alsea Spit, bacteria, Bayocean Spit, climate change, climate precipitation, coastal hazards, Columbia River estuary, Coos Bay, dissolved oxygen, El Nino, erosion, estuaries, geology, landslides, Nehalem Bay, Nehalem Spit, Neskowin (Or.), Netarts Bay, ocean acidification, Rockaway Beach, salinity, Salmon River Estuary, sea level, Siletz Bay, Tillamook Bay, water temperature, wave heights, Yachats River, Yaquina Bay}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A637577}, author = {Ruggiero, Peter and Brown, Cheryl A. and Komar, Paul D. and Allan, Jonathan C. and Reusser, Deborah A. and Lee II, Henry}, editor = {Dello, Kathie and Mote, Philip W.} } @article {80251, title = {Inflorescences and compound leaves of the extinct Platanus neptuni complex in the Oligocene of Oregon, USA}, journal = {Acta Palaeobotanica}, volume = {50}, year = {2010}, note = {On the central Oregon coast, terrestrial fossils are rarely found. This article describes the dominant flora species that seems to have flourished about 28 million years ago, on land on a deltaic plain of the ancestral Yaquina River. The fossils of this extinct species were found between the upper and lower marine tongues of the Yaquina Formation. The article discusses the taxonomy and worldwide distribution of the Platanus genus and mentions associated flora. The fossils recovered on Yaquina Bay are now housed in the U.S. National Museum.}, pages = {p.5-15}, keywords = {fossils, geology, Oligocene, paleosciences, taxonomy, terrestrial vegetation, The Bend, Yaquina Formation, Yaquina River}, author = {Manchester, Steven R. and Kva{\v c}ek, Zlatko} } @article {34421, title = {Linking ocean conditions to year class strength of the invasive European green crab, Carcinus maenas}, journal = {Biological Invasions}, volume = {12}, number = {6}, year = {2010}, note = {The authors correlate recruitment strength in the introduced European green crab in the Pacific Northwest with certain prevailing ocean conditions. "Once a non-native species arrives and survives in an area, its long-term persistence depends on its recruitment success. If conditions are not favorable for recruitment it will ultimately disappear. . . . Right now, green crabs are still too rare to exert a measurable effect on the native benthic community and on shellfish culture in Oregon and Washington. However, if their numbers were to increase, we would be able to predict the arrival of strong year classes from ocean conditions and alert managers and shellfish growers of possible increases in predation pressure from this invader. " [from the article abstract]}, pages = {p.1791-1804}, keywords = {Coos Bay, European green crab = Carcinus maenas, introduced species, Netarts Bay, Tillamook Bay, Yaquina Bay}, doi = {10.1007/s10530-009-9589-y}, author = {Yamada, Sylvia Behrens and Kosro, P. Michael} } @article {34256, title = {Recolonization of intertidal Zostera marina L. (eelgrass) following experimental shoot removal}, journal = {Journal of Experimental Marine Biology and Ecology }, volume = {374}, number = {1}, year = {2009}, note = {This paper studies the time it takes for eelgrass meadows to recover from disturbances, in particular the difference between continuous lower intertidal meadows as opposed to higher intertidal patches of eelgrass. Areas of eelgrass in Yaquina Bay were denuded and the time of recovery was studied. The lower continous meadows recovered within 24 months, but recovery for the patchy higher intertidal eelgrass plots was much slower. Map, charts, aerial photographs. Summarizes current state of eelgrass beds in the Yaquina estuary.}, pages = {p.69-77}, keywords = {aquatic vegetation, eelgrass=Zostera marina, habitat restoration}, doi = {10.1016/j.jembe.2009.04.011}, author = {Boese, Bruce L. and Kaldy, James E. and Patrick J Clinton and Eldridge, Peter M. and Folger, Christina L.} } @inbook {34206, title = {Archaeology illuminated by history, history illuminated by archaeology: examples from the Oregon Coast.}, booktitle = {Dunes, Headlands, Estuaries, and Rivers: Current Archaeological Research on the Oregon Coast}, series = {Association of Oregon Archaeologists Occasional Paper}, volume = {no.8}, year = {2008}, note = {Explores the Half Moon Weir site near the mouth of the North Fork of the Siuslaw River, along with sites at Yaquina Falls and Spencer Creek in Lincoln County and Whaleshead Cove in Curry County.}, pages = {p.95-105}, publisher = {Association of Oregon Archaeologists}, organization = {Association of Oregon Archaeologists}, address = {Eugene, Or.}, keywords = {archeology, indigenous peoples, Upper Yaquina River, weirs}, author = {Connolly, Thomas J. and Byram, Robert Scott and Kentta, Robert} } @mastersthesis {34231, title = {Dispersal and Population Structure of Neotrypaea californiensis}, year = {2008}, pages = {26 p.}, school = {San Jose State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Biological Sciences}, address = {San Jose, Calif.}, keywords = {genetics, Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), spatial distribution, theses, Yaquina Bay, zooplankton}, url = {https://tinyurl.com/6f4ypbu}, author = {Kozuka, Kenji} } @article {80341, title = {Economic Benefits of Conservation Natural Lands: Case Study: Yaquina Bay Conservation Opportunity Area, Oregon}, year = {2008}, note = {If you have ever wondered what undeveloped land in estuaries is worth, this publication might be of interest. This study, based on 2004 data, wasn{\textquoteright}t able to quantify the value of every service performed by undeveloped land and open spaces, but does a good job of detailing what is possible to quantify. {\textquotedblleft}Recreational fishing is the activity that generates the single largest value, followed by commercial crabbing and oyster harvests. Carbon sequestration, the only ecosystem service included in our analysis, generates substantial economic value as well, although the current uncertainties surrounding access and credit prices on emerging carbon markets make this estimate somewhat less reliable than those for the other uses we examine.{\textquotedblright} (p.1-2)}, pages = {39 p.}, institution = {Defenders of Wildlife}, address = {Washington, D.C.}, keywords = {agriculture, carbon, commercial fisheries - groundfish, economics, education, forestry, Hatfield Marine Science Center, human impacts, recreation, recreational fisheries {\textendash} groundfish, salmon, shellfish, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/8s45q9195}, author = {Kroeger, Timm and McMurray, Anna} } @article {83220, title = {Contaminant exposure in outmigrant juvenile salmon from Pacific Northwest estuaries of the United States}, journal = {Environmental Monitoring and Assessment}, volume = {124}, number = {1-3}, year = {2007}, note = {When juvenile salmonids migrate downstream towards the ocean, they can encounter and absorb harmful chemicals such as DDT, polychlorinated biphenyls (PCBs), polycyclic aromatic hydrocarbons (PAHs) and pesticides. The authors of this paper measured harmful chemicals in tissues of juvenile salmonids, and in their prey. They also measured stomach contents of salmon from estuaries and hatcheries. Results were not surprising: industrial estuaries such as the Columbia River, Coos Bay and Yaquina Bay showed high contaminant exporsure (Yaquina Bay was high in PCBs in Chinook salmon), while natural estuaries like the Salmon and Elk River estuaries, had low exposures to harmful chemicals. Some of the conservation estuaries, including Alsea Bay, had relatively high exposures to contaminants. . Juvenile Chinook were more vulnerable than coho salmon.}, pages = {p.167-194}, keywords = {Alsea Bay, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, Columbia River, Coos Bay, Coquille River estuary, DDT, Elk River, juvenile fish, migration, pesticides, Salmon River, Salmon River Hatchery, Tillamook Bay, water pollution, Yaquina Bay}, doi = {https://doi.org/10.1007/s10661-006-9216-7 }, author = {Johnson, Lyndal L. and Ylitalo, Gina M. and Arkoosh, Mary R. and Kagley, Anna N. and Stafford, Coral and Bolton, Jennie L. and Buzitis, Jon and Anulacion, Bernadita F. and Collier, Tracy K.} } @article {83007, title = {Pacific Northwest Coast Ecoregional Assessment}, year = {2006}, note = {{\textquotedblleft}Prepared by The Nature Conservancy, the Nature Conservancy of Canada, and the Washington Department of Fish and Wildlife.{\textquotedblright} This is a very broad ecological assessment for the Pacific Northwest: British Columbia, Washington and Oregon. {\textquotedblleft}The purpose of the Pacific Northwest Coast ecoregional conservation assessment was to identify an efficient suite of conservation sites that will contribute toward the long-term survival of all viable native plant and animal species and natural communities in the ecoregion.{\textquotedblright} (p.ix) This document is accompanied by appendices indicating sites of interest. V.1 - main report, v.2 - appendices, v.3 - maps. Appendices: https://ir.library.oregonstate.edu/concern/defaults/sb397d851 Maps: https://ir.library.oregonstate.edu/concern/defaults/v692tc30m}, pages = {129 p.}, institution = {The Nature Conservancy}, address = {Portland, Or.}, keywords = {climate, depleted populations, ecosystem health, ecosystem modeling, general, habitats, human impacts}, url = {https://ir.library.oregonstate.edu/concern/defaults/8g84mr696}, author = {VanderSchaaf, Dick and Wilhere, George and Ferdana, Zack and Popper, Ken and Schindel, Michael and Skidmore, Peter and Rolph, Dave and Lachetti, Pierre and Kittel, Gwen and Crawford, Rex and Pickering, Debbie and Christy, John A.} } @article {34091, title = {Production ecology of the non-indigenous seagrass, Dwarf Eelgrass (Zostera japonica Ascher. \& Graeb.), in a Pacific Northwest estuary, USA}, journal = {Hydrobiologia}, volume = {553}, number = {1}, year = {2006}, month = {2006}, pages = {201-217}, keywords = {biological, eelgrass=Zostera japonica, Idaho Point, life history information}, doi = {10.1007/s10750-005-5764-z}, author = {Kaldy, James E. III} } @article {83134, title = {Classification of Native Vegetation of Oregon}, year = {2004}, note = {{\textquotedblleft}This classification lists the native plant associations known to occur in Oregon, and includes both successional and climax vegetation types that were an important part of the presettlement landscape of Oregon. It serves as an index to the diversity, distribution and relative rarity of the state{\textquoteright}s native plant associations, and as a guide to their literature. Plant associations are listed by scientific name, followed by common name and acronym. Listings include the global and state rank of each association, the ecoregion in which it occurs, its status as wetland or upland, and references describing the association.{\textquotedblright} (from the introduction)}, pages = {52 p. }, institution = {Oregon Natural Heritage Program}, address = {Portland, Or.}, keywords = {depleted populations, species list, terrestrial vegetation, wetland vegetation}, url = {https://ir.library.oregonstate.edu/concern/defaults/kw52jd11x }, author = {Kagan, James S. and Christy, John A. and Murray, Michael P. and Titus, Jonathan A.} } @article {33941, title = {Genetic population structure of central Oregon Coast coho salmon (Oncorhynchus kisutch)}, journal = {Conservation Genetics}, volume = {5}, number = {6}, year = {2004}, note = {The "Alsea complex" includes the Alsea, Siletz and Yaquina Rivers, along with Devil Creek and Beaver Creek. These coho populations are closely related.}, pages = {p.797-812}, keywords = {Coho salmon = Oncorhynchus kisutch}, doi = {10.1007/s10592-004-1983-5}, author = {Ford, Michael J. and Teel, David J. and Van Doornik, Donald M. and Kuligowski, David and Lawson, Peter W.} } @article {33926, title = {Survey of pathogens in juvenile salmon Oncorhynchus spp. migrating through Pacific Northwest estuaries}, journal = {Journal of Aquatic Animal Health}, volume = {16}, number = {4}, year = {2004}, note = {Tracks selected pathogens in Chinook and coho salmon in Pacific Northwest estuaries from 1996-2001. Gives percentages of infected fish found in estuaries. Suggests role disease may play in salmonid ecology. Maps; charts.}, pages = {p.186-196}, keywords = {Aeromonas salmonicida, Alsea Bay, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, Elk River, ENV), erythrocytic necrosis virus or erythrocytic inclusion body syndrom (EIBS, Listonella anguillarum, Nonophyetus salmincola, Renibacterium salmoninarum, Salmon River, Yaquina River, Yersinia ruckeri}, doi = {10.1577/H03-071.1}, author = {Arkoosh, M. R. and Clemons, E. and Kagley, A. N. and Stafford, C. and Glass, A. C. and Jacobson, K. and Reno, P. and Myers, M. S. and Casillas, E. and Loge, F. and Johnson, L. L. and Collier, T. K.} } @article {33836, title = {Abundance of seagrass (Zostera marina L.) and macroalgae in relation to the salinity-temperature gradient in Yaquina Bay, Oregon, USA}, journal = {Estuaries}, volume = {26}, number = {4B}, year = {2003}, month = {2003}, pages = {1130-1141}, keywords = {abundance, biological, eelgrass=Zostera marina, green algae, Yaquina Bay, zonal distribution}, isbn = {0160-8347}, doi = {10.1007/BF02803369}, author = {Kentula, M.E. and DeWitt, Theodore H.} } @book {25996, title = {Oregon lampreys: natural history, status and analysis of management issues}, series = {Information Reports (Oregon. Fish Division)}, number = {2002-01}, year = {2002}, note = {Lampreys have been declining in Oregon. This report looks at what is known about the species and possible causes for the decline. Colored maps, charts and photographs. "This paper concludes with a Problem Analysis for Oregon lampreys. Our biggest problem is poor information, ranging from not knowing basic species identity to having inefficient or no systematic monitoring of lamprey abundance and distribution." (Executive Summary, p.2)}, month = {2002}, pages = {80 p.}, publisher = {Oregon Dept. of Fish and Wildlife}, organization = {Oregon Dept. of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {Alsea River, Beaver Creek, Coos River, Coquille River, depleted populations, Drift Creek, Gold Ray Dam, Kilchis River, life history information, Necanicum River, Nehalem River, North Umpqua River, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), population biology, population count, reproductive behavior, Rogue River, Salmon River, Siletz River, Siuslaw River, Smith River, South Umpqua River, taxonomy, Tenmile Creek, Western brook lamprey = Lampetra richardsoni, Wilson River, Winchester Dam, Yachats River, Yaquina River}, url = {https://digital.osl.state.or.us/islandora/object/osl:18613}, author = {Kostow, Kathryn Eileen} } @article {13776, title = {Recovery of wild salmonids in Western Oregon lowlands}, volume = {no.2002-1}, year = {2002}, note = {Focus on lower rivers and estuaries. Good summaries of states of streams. Appendix B gives stream miles that meet EPA 303(d) water quality standards.}, pages = {169 p.}, institution = {Independent Multidisciplinary Science Team,}, address = {Salem, Or.}, keywords = {estuaries, habitat restoration, human impacts, Oncorhynchus spp., salmon}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/7d278t113}, author = {Independent Multidisciplinary Science Team, and Buckhouse, John and Elmore, Wayne and Gregory, Stanley and Kavanagh, Kathleen and Pearcy, William G. and Schreck, Carl B.} } @article {15726, title = {Reducing Impacts of Hatchery Steelhead Programs}, volume = {no.2001-01}, year = {2001}, note = {Attempts to determine how many hatchery steelhead were straying into other rivers to spawn, also if the timing of their spawning increased the risk of hatchery steelhead interbreeding with wild fish. Investigated the use of local broodstock in hatcheries, and some methods of reducing interbreeding between hatchery and wild steelhead. Hatchery salmonids in the Alsea and Siuslaw rivers were studied from 1991-1993.}, pages = {88 p.}, institution = {Oregon Dept. of Fish and Wildlife, Fish Division}, address = {Portland, Or.}, keywords = {Alsea River, Chetco River, Coquille River, genertics, hatcheries, hatchery salmonids, Necanicum River, Nehalem River, Nestucca River, reproductive behavior, Rogue River, Siletz River, Siuslaw River, Sixes River, steelhead trout = Oncorhynchus mykiss, Tenmile Creek, Trask River, Umpqua River, wild salmonids, Yachats River, Yaquina River}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A18493}, author = {Lindsay, Robert B. and Kenaston, Ken R. and Schroeder, R. Kirk} } @article {33706, title = {Wave runup, extreme water levels and the erosion of properties backing beaches}, journal = {Journal of Coastal Research}, volume = {17}, number = {2}, year = {2001}, note = {Water level and beach morphology and size are the major factors determining erosion of beachfront properties. "This paper reports on a model that has been developed to evaluate the susceptibility of coastal properties to erosion to waves..." (p.407)}, month = {2001, Spring}, pages = {p.407-419}, keywords = {Agate Beach, Beverly Beach, Cape Perpetua, coastal hazards, erosion, Gleneden Beach, Jump-Off Joe, Lost Creek State Park, Manzanita, Nestucca Spit, Nye Beach, Oceanside, South Beach, wave data, Yaquina Head}, author = {Ruggiero, Peter and Komar, Paul D. and McDougal, William G. and Marra, John J. and Beach, Reggie A.} } @inbook {33571, title = {Habitat assessment in coastal basins in Oregon: Implications for coho salmon production and habitat restoration}, booktitle = {Sustainable Fisheries Management: Pacific Salmon}, year = {2000}, month = {2000}, pages = {329-340}, publisher = {CRC Press}, organization = {CRC Press}, address = {Boca Raton}, keywords = {biological, coho salmon=Oncorhynchus kisutch, habitat conservation, habitat restoration, Yaquina River}, author = {Jones, Kim K. and Moore, Kelly M. S.}, editor = {Knudsen, E.Eric and Steward, Cleveland R. and MacDonald, Donald D. and Williams, Jack E. and Reiser, Dudley W.} } @article {33476, title = {Avoidance response of the estuarine amphipod Eohaustorius estuariusto polycyclic aromatic hydrocarbon-contaminated field-collected sediments}, journal = {Environmental Toxicology and Chemistry}, volume = {18}, number = {6}, year = {1999}, month = {June_1999}, pages = {1232-1235}, keywords = {amphipods, chemical, Eohaustorius species, hydrocarbons, Idaho Flats, sediment data, sediments, toxicity}, author = {Kravitz, Michael J. and Lamberson, Janet O. and Ferraro, Steven P. and Swartz, Richard C. and Boese, Bruce L. and Specht, David T.} } @article {33496, title = {Littoral cell response to interannual climatic forcing 1983-1987 on the Central Oregon Coast, USA}, journal = {Journal of Coastal Research}, volume = {6}, number = {1}, year = {1999}, note = {Discusses the migration of sand in a littoral cell from south Lincoln County, Oregon beaches following the El Nino of 1982-83, and the eventual reappearance of the sand. Black-and-white photographs, graphs, charts. Deals with the Seal Rock littoral cell (from Yaquina Head to Cape Perpetua). Mostly about beaches, but does compare sand flow to the ocean from Yaquina Bay and Alsea Bay.}, month = {1999, Winter}, pages = {p.87-110}, keywords = {Alsea Bay, Alsea Spit, climate, erosion, wave height data}, author = {Peterson, Curt D. and Jackson, Philip L. and O{\textquoteright}Neil, Douglas J. and Rosenfeld, Charles L. and Kimerling, A. Jon} } @article {33416, title = {Oregon Ocean Salmon Fisheries, 1996. Annual status Report.}, year = {1998}, month = {April_1998}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {age composition, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, environmental policy and law, fishes, general, hatchery salmonids, methodology, natural resource management, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, size composition}, author = {Schindler, Eric and Loynes, Tom and Kaiser, Rodney J. and Oregon. Dept. of Fish and Wildlife,} } @article {33401, title = {Status review of chinook salmon from Washington, Idaho, Oregon, and California}, volume = {no.35}, year = {1998}, note = {NOAA seems to have an earlier version of this report (their version, Dec. 1997) on their website as the source for the online copy. The team studying Chinook salmon felt that for the Oregon Coast this species is not in danger of extinction, nor thought to become extinct "in the forseeable future" (p.249). Appendix D gives the known history of hatchery releases. }, month = {1998, Feb.}, pages = {443 p.}, institution = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service}, address = {[Seattle, Wash.] }, keywords = {Alsea River, Chinook salmon = Oncorhynchus tshawytscha, Coos River, Coquille River, endangered species, environmental policy and law, general ecosystem description, genetics, hatcheries, historical, Kilchis River, life history information, Miami River, Millicoma River, natural resource management, Necanicum River, Nehalem River, Nestucca River, population biology, population count, Salmon River, salmonid species, Siletz River, Siuslaw River, statistics, Tillamook River, Trask River, Umpqua River, Wilson River, Yachats River, Yaquina River}, url = {https://repository.library.noaa.gov/view/noaa/3034}, author = {Myers, James M. and Kope, Robert G. and Bryant, Gregory J. and Teel, David J. and Lierheimer, Lisa J. and Wainwright, Thomas C. and Grant, W. Stewart and Waknitz, F. William and Neely, Kathleen and Lindley, Steven T. and Waples, Robin S.} } @article {33271, title = {Cascadia subduction zone tsunamis: hazard mapping at Yaquina Bay, Oregon: Final technical report to the National Earthquake Hazard Reduction Program}, volume = {no.0-97-34}, year = {1997}, month = {Dec_1997}, institution = {Department of Oregon Geology and Mineral Industries}, address = {Portland, OR}, keywords = {flooding, geological, tsunamis, Yaquina Bay}, url = {https://pubs.oregon.gov/dogami/ofr/O-97-34.pdf}, author = {Priest, George R. and Myers, Edward and Baptista, Antonio M. and Fleuck, Paul and Wang, Keline and Kamphaus, Robert A. and Peterson, Curt D.} } @article {33301, title = {Oregon Ocean Salmon Fisheries, 1995. Annual Report.}, year = {1997}, month = {January_1997}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, OR]}, keywords = {age composition, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, environmental policy and law, fishes, general, hatchery salmonids, methodology, natural resource management, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, size composition}, author = {Schindler, Eric and Loynes, Tom and Kaiser, Rodney J. and Oregon. Dept. of Fish and Wildlife. Fish Division,} } @article {33251, title = {Rate of tube building and sediment particle size selection during tube construction by the tanaid crustacean, Leptochelia dubia}, journal = {Estuaries}, volume = {20}, number = {3}, year = {1997}, month = {1997}, pages = {534-546}, keywords = {abundance, aquatic invertebrates, aquatic vegetation, bacteria, biological, crustaceans, hydrology, Idaho Flats, Oregon State University Hatfield Marine Science Center, physical, population biology, sediment data, size composition, tanaids, Yaquina Bay}, author = {Krasnow, Lynne D. and Taghon, Gary L.} } @article {33316, title = {The wave climate of the Pacific Northwest (Oregon and Wahington): a comparison of data sources}, journal = {Journal of Coastal Research}, volume = {13}, number = {2}, year = {1997}, month = {Spring_1997}, pages = {440-452}, keywords = {hydrology, physical, wave data, wave height, Yaquina Bay}, author = {Tilloston, Kevin J. and Komar, Paul D.} } @inbook {82561, title = {Great-earthquake potential in Oregon and Washington {\textendash} an overview of recent coastal geologic studies and their bearing on segmentation of Holocene ruptures, Central Cascadia Subduction Zone}, booktitle = {Assessing Earthquake Hazards and Reducing Risk in the Pacific Northwest, v.1}, series = {U.S. Geological Survey Professional Paper}, volume = {no.1560 v.1}, year = {1996}, note = {This article gives a good overview of the discovery of the Pacific Northwest{\textquoteright}s past earthquake history and what was known about this history. Unfortunately, at the time this article was written, while studies were being done on 27 estuaries in the region, only half of the work had been completed. There is good information about Netarts, Salmon River, Siletz and Alsea Bays.}, pages = {p.91-114}, publisher = {U.S. G.P.O.}, organization = {U.S. G.P.O.}, address = {Washington, D.C.}, keywords = {Nehalem River, Nestucca River, Netarts Bay, Salmon River estuary, Siletz Bay, Alsea Bay, Siuslaw River, Umpqua River estuary, Coos Bay, South Slough, Coquille River estuary, coastal hazards, earthquakes, tsunamis, geology, paleosciences, tectonics}, url = {https://pubs.usgs.gov/pp/1560vol1/report.pdf}, author = {Nelson, Alan R. and Personius, Stephen F.}, editor = {Rogers, A.M. and Walsh, Timothy J. and Kockelman, William J. and Priest, George R.} } @article {33161, title = {Oregon Ocean Salmon Fisheries, 1994. Annual Report}, year = {1996}, month = {February_1996}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {age composition, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, environmental policy and law, fishes, general, hatchery salmonids, methodology, natural resource management, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, size composition}, author = {Schindler, Eric and Kaiser, Rodney J. and Loynes, Tom and Oregon. Dept. of Fish and Wildlife. Fish Division,} } @article {33001, title = {Differences in the onset of salinity tolerance between juvenile chinook salmon from two coastal Oregon river systems}, journal = {Canadian Journal of Fisheries and Aquatic Sciences}, volume = {52}, number = {3}, year = {1995}, month = {1995}, pages = {623-630}, keywords = {biological, chinook salmon=Oncorhynchus tshawytscha, Oregon State University Hatfield Marine Science Center, physiology}, author = {Kreeger, Karen Young} } @article {33076, title = {Status review of coho salmon from Washington, Oregon, and California}, volume = {no.24}, year = {1995}, note = {The Biological Review Team concluded that "coho salmon in this ESU are not at immediate risk of extinction but are likely to become endangered in the future if present trends continue." The Team noted that "spawning escapements have declined substantially during this century and may now be at less than 5\% of their abundance in the early 1900s." (p.128) }, pages = {258 p.}, institution = {U.S. National Marine Fisheries Service, Northwest Fisheries Science Center }, address = {Seattle, Wash.}, keywords = {Coho salmon = Oncorhynchus kisutch, Coos River, Coquille River, endangered species, environmental policy and law, general ecosystem description, genetics, hatcheries, historical, life history information, Miami River, natural resource management, Necanicum River, Nehalem River, Nestucca River, population biology, population count, Salmon River, salmonid species, Siletz River, Siuslaw River, statistics, Tillamook River, Umpqua River, Wilson River, Yaquina River}, url = {https://www.nwfsc.noaa.gov/assets/25/5585_06172004_123333_coho.pdf}, author = {Weitkamp, Laurie A. and Wainwright, Thomas C. and Bryant, Gregory J. and Milner, George B. and Teel, David J. and Kope, Robert G. and Waples, Robin S.} } @article {32896, title = {Biologically active factors against the monogenetic trematode Gyrodactylus stellatus in the serum and mucus of infected juvenile English soles}, journal = {Journal of Aquatic Animal Health}, volume = {6}, number = {2}, year = {1994}, month = {1994}, pages = {93-100}, keywords = {biological, English sole=Pleuronectes vetulus, fish disease, fishes, Gyrodactylus stellatus, Oregon State University Hatfield Marine Science Center, physiology, platyhelminthes, trematodes}, author = {Moore, Michelle M. and Kaattari, S. L. and Olson, Robert E.} } @article {32916, title = {Oregon Ocean Salmon Fisheries, 1993. Annual Report. October 1, 1992 to September 30, 1993}, year = {1994}, month = {April_1994}, institution = {Oregon Department of Fish and Wildlife. Fish Division}, address = {[Portland, Or.]}, keywords = {age composition, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, environmental policy and law, fishes, general, hatchery salmonids, methodology, natural resource management, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, size composition}, author = {Schindler, Eric and Osis, Laimons and Kaiser, Rodney J. and Oregon. Dept. of Fish and Wildlife. Fish Division,} } @article {32786, title = {Seasonal patterns in utilization of dietary protein by the mussel, Mytilus trossulus}, journal = {Marine Ecology Progress Series}, volume = {95}, number = {3}, year = {1993}, month = {May_1993}, pages = {215-232}, keywords = {aquatic invertebrates, biological, bivalves, blue mussel=Mytilus edulis, feeding behavior, life history information, molluscs, physiology, population biology, reproductive behavior, Yaquina Bay}, url = {http://www.int-res.com/articles/meps/95/m095p215.pdf}, author = {Kreeger, Daniel A.} } @article {32836, title = {Tsunamis affecting the west coast of the United States 1806-1992}, volume = {no.29}, year = {1993}, note = {Good data graphs}, month = {December_1993}, pages = {242 p.}, institution = {National Geophysical Data Center}, address = {Boulder, Colo.}, keywords = {Alsea River estuary, coastal hazards, Columbia River estuary, Coos River estuary, Coquille River estuary, Depoe Bay, Nehalem River estuary, Netarts estuary, physical, Port Orford, Rogue River estuary, Siuslaw River estuary, Tillamook estuary, Umpqua River estuary, Yaquina Bay}, url = {https://repository.library.noaa.gov/view/noaa/13442}, author = {U. S. Department of Commerce. National Oceanic and Atmospheric Administration, and Lander, James F. and Lockridge, Patricia A. and Kozuch, Michael J.} } @article {32746, title = {Oregon Ocean Salmon Fisheries, 1991. Annual Report. September 30, 1990 to September 29, 1991}, year = {1992}, month = {February_1992}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {age composition, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, environmental policy and law, fishes, general, hatchery salmonids, methodology, natural resource management, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, size composition}, author = {Schindler, Eric and Osis, Laimons and Kaiser, Rodney J. and Oregon. Dept. of Fish and Wildlife. Ocean Salmon Management,} } @article {32741, title = {Oregon Ocean Salmon Fisheries, 1992. Annual Report. September 30, 1991 to September 29, 1992}, year = {1992}, month = {February_1992}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {age composition, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, environmental policy and law, fishes, general, hatchery salmonids, methodology, natural resource management, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, size composition}, author = {Schindler, Eric and Osis, Laimons and Kaiser, Rodney J. and Oregon. Dept. of Fish and Wildlife. Ocean Salmon Management,} } @mastersthesis {32676, title = {Particle Selection for Tube Building and the Stabilization of Sediments by Leptochelia dubia (Crustacea, Tanaidacea): Interactions with Bacteria and Microalgae}, year = {1992}, note = {Major professor was Gary Taghon. }, month = {1992}, pages = {126 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {College of Oceanography}, address = {Corvallis, Or.}, keywords = {biological, Idaho Flats, Leptochelia dubia, life history information, population biology, sediments, theses}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/f1881p118}, author = {Krasnow, Lynne D.} } @article {32686, title = {Seasonal variation in the utilization of dietary protein by the mussel, Mytilus trossulus}, journal = {Journal of Shellfish Research}, volume = {11}, number = {1}, year = {1992}, note = {Abstract only}, month = {1992}, pages = {199-200}, keywords = {aquatic invertebrates, biological, bivalves, blue mussel=Mytilus edulis, feeding behavior, molluscs, organic carbon, physiology, population biology, Yaquina Bay}, author = {Kreeger, Daniel A. and Langdon, Christopher J.} } @article {32721, title = {Shorebird Numbers in Wetlands of the Pacific Flyway: a Summary of Counts from April 1988 to January 1992}, year = {1992}, note = {Summarizes waterbird census data from 1988-1991. Spring and winter shorebird abundance data for the Yaquina is given.}, pages = {18 p.}, institution = {Point Reyes Bird Observatory}, address = {Stinson Beach, Calif.}, keywords = {Alsea Bay, Bandon Marsh, birds, black-bellied plover = Pluvialis squatarola, Columbia River estuary, Coos Bay, dowitchers = Limnodromus spp., Dunlin = Calidris alpina, Greater yellowlegs = Tringa melanoleuca, Nestucca Bay, Netarts Bay, New River Estuary, Siletz Bay, Siuslaw River estuary, temporal abundance, temporal distribution, Tillamook Bay, Umpqua River estuary, western sandpiper = Calidris mauri, Yaquina Bay}, url = {https://www.arlis.org/docs/vol1/J/41812324.pdf}, author = {Page, Gary W. and Shuford, W. Davud and Kjelmyr, Janet E. and Stenzel, Lynne E.} } @article {32701, title = {Status of Anadromous Salmonids in Oregon Coastal Basins}, year = {1992}, month = {1992}, pages = {83 p.}, institution = {Oregon Department of Fish and Wildlife}, address = {Newport, Or.}, keywords = {biological, chinook salmon=Oncorhynchus tshawytscha, chum salmon=Oncorhynchus keta, coho salmon=Oncorhynchus kisutch, geographical distribution, life history information, Pacific salmonids=Oncorhynchus species, steelhead=Oncorhynchus mykiss}, author = {Nickelson, Thomas E. and Nicholas, J. W. and McGie, Alan M. and Lindsay, Robert B. and Bottom, Daniel L. and Kaiser, Rodney J. and Jacobs, Steven E.} } @mastersthesis {32681, title = {Utilization of Dietary Protein by the Mussel, Mytilus edulis trossulus (Linnaeus 1758)}, year = {1992}, note = {Major professor was Christopher J. Langdon. }, month = {August_1992}, pages = {209 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Fisheries and Wildlife}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, biological, bivalves, blue mussel=Mytilus edulis, feeding behavior, Marine Science Center Dock, molluscs, physiology, population biology, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/pn89d9442}, author = {Kreeger, Daniel A.} } @book {32761, title = {White Sturgeon Management Framework Plan}, year = {1992}, month = {September_1992}, pages = {201 p.}, publisher = { Pacific States Marine Fisheries Commission}, organization = { Pacific States Marine Fisheries Commission}, address = {Portland, Or.}, keywords = {biological, commercial fisheries, geographical distribution, life history information, recreational fisheries, white sturgeon=Acipenser transmontanus, Yaquina River}, author = {White Sturgeon Planning Committee, and Hanson, David L. Hanson and Cochnauer, Tim G. and DeVore, John D. and Henry E. Jr Forner and Kisanuki, Tom T. and Kohlhorst, David W. and Lumley, Paul and McCabe, George, Jr. and Nigro,Anthony A. and Parker, Steve and Swartz, Don and VanVooren, Al} } @article {32606, title = {Oregon Ocean Salmon Fisheries, 1990. Annual Report. September 30, 1989 to September 29, 1990}, year = {1991}, month = {February_1991}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {age composition, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, environmental policy and law, fishes, general, methodology, natural resource management, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, size composition}, author = {Schindler, Eric and Osis, Laimons and Kaiser, Rodney J. and Oregon. Dept. of Fish and Wildlife. Fish Division,} } @article {32506, title = {Oregon Ocean Salmon Fisheries, 1989. Annual Report. September 30, 1988 to September 29, 1989}, year = {1990}, month = {November_1990}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {age composition, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, environmental policy and law, fishes, general, methodology, natural resource management, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, size composition}, author = {Schindler, Eric and Osis, Laimons and Kaiser, Rodney J. and Oregon. Dept. of Fish and Wildlife. Fish Division,} } @article {32391, title = {Acute toxicity of sediment from Eagle Harbor, Washington, to the infaunal amphipod Rhepoxynius abronius}, journal = {Environmental Toxicology and Chemistry}, volume = {8}, number = {3}, year = {1989}, month = {1989}, pages = {215-222}, keywords = {amphipods, aquatic invertebrates, bioassay, biological, chemical, creosote, crustaceans, fluoranthene, physiology, Rhepoxynius abronius, toxicity, Yaquina Bay}, author = {Swartz, Richard C. and Kemp, Paul F. and Schults, Donald W. and Ditsworth, George R. and Ozretich, Robert J.} } @article {55401, title = {Estimated run size of winter steelhead in Oregon coastal streams, 1980-85}, volume = {no.89-1}, year = {1989}, month = {1989}, pages = {18 p.}, institution = {Oregon Dept. of Fish and Wildlife, Research and Development Section}, address = {Portland, Or.}, keywords = {abundance, Alsea River, Beaver Creek (Lincoln County), Cow Creek, Deadwood Creek (Siuslaw), Drift Creek (Alsea), Drift Creek (Siletz), Fall Creek (Alsea), Five Rivers (Alsea), Indian Creek (Siuslaw), Lake Creek (Siuslaw), Munsel Lake (Siuslaw), North Fork Alsea River, North Fork Siletz River, North Fork Siuslaw River, North Umpqua River, population count, Rock Creek (Siletz), Salmon River, Schooner Creek (Siletz), Siletz River, Siuslaw River, Slick Rock Creek (Salmon), Smith River, South Fork Alsea River, South Fork Siletz River, South Umpqua River, steelhead trout = Oncorhynchus mykiss, Sweet Creek (Siuslaw), Yachats River, Yaquina Bay, Yaquina River}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A18408}, author = {Kenaston, Ken R.} } @article {32361, title = {Oregon Ocean Salmon Fisheries, 1988. Annual Report. September 30, 1987 to September 29, 1988}, year = {1989}, month = {February_1989}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {age composition, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, economics, environmental policy and law, fishes, general, natural resource management, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, size composition}, author = {Osis, Laimons and Schindler, Eric and Kaiser, Rodney J. and Oregon. Dept. of Fish and Wildlife, and National Marine Fisheries Service} } @mastersthesis {32211, title = {Epidermal Tumors on Juvenile English Sole (Parophrys vetulus) from Yaquina Bay, Oregon}, year = {1988}, note = {Major professor was Robert E. Olson. }, month = {December_1988}, pages = {95 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fisheries and Wildlife}, address = {Corvallis, Or.}, keywords = {biological, developmental stages, English sole = Pleuronectes vetulus, fish disease, fishes, life history information, physiology, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/w3763b19z}, author = {Koike, Bruce G.} } @article {80211, title = {The Jump-Off Joe landslide at Newport, Oregon: history of erosion, development and destruction}, journal = {Shore and Beach }, volume = {v.56 }, year = {1988}, note = {In the winter of 1942-1943, a block of about 15 acres of land on which 15 houses were located, slumped and slid towards the sea. This happened in the {\textquotedblleft}Jump-Off Joe{\textquotedblright} area of Newport, a location that has the highest rate of erosion on the Oregon Coast. In 1982, developers built a condominium in the same area. The project was approved by Newport city government, and some geologists claimed that it was safe, although it was next to an active landslide. Environmentalists objected. Nature settled the argument. This article gives a good history of the area and is an excellent cautionary tale. Good map, lots of photographs.}, month = {1988, Jul.}, pages = {p.15-21}, keywords = {coastal hazards, erosion, geology, Jump-Off Joe, landslides, Newport (Or.), Nye Beach, paleosciences}, author = {Sayre, William O. and Komar, Paul D.} } @article {32141, title = {Oregon Coastal Coho Salmon Spawning Surveys. 1987-88 Season Data Report. Lincoln Fisheries District [Oregon Aqua-Foods]}, year = {1988}, note = {Mostly statistical tables.}, month = {November_1988}, institution = {Buell \& Associates, Inc.}, address = {Portland, Or.}, keywords = {Alsea River estuary, Bales Creek, Bear Creek, Beaver Creek, Beaver Creek estuary, Big Elk Creek, biological, coho salmon=Oncorhynchus kisutch, Cook Creek, Deer Creek, depleted populations, Feagles Creek, fishes, hatchery salmonids, Hayes Creek, Klamath Creek, Little Elk Creek, Mill Creek, Olalla Creek, reproductive behavior, Salmon Creek, Siletz River estuary, Simpson Creek, Stony Creek, Thornton Creek, Wildcat Creek, Wolf Creek, Wright Creek, Yaquina Bay, Yaquina River}, author = {Buell, J.W. and Kruger, R.L. and Buell \& Associates, Inc., and Oregon Aqua-Foods, Inc.,} } @article {32051, title = {Incidence of Vibrio cholerae from estuaries of the United States west coast}, journal = {Applied and Environmental Microbiology}, volume = {53}, number = {6}, year = {1987}, month = {June_1987}, pages = {1344-1348}, keywords = {biological, blue mussel=Mytilus edulis, California mussel=Mytilus californianus, molluscs, Nuttall cockle=Clinocardium nuttallii, Pacific gaper=Tresus nuttallii, Pacific oyster=Crassostrea gigas, shellfish disease, Vibrio, Yaquina Bay}, author = {Kaysner, Charles A. and Carlos Jr. Abeyta and Wekell, Marleen M. and Angelo Jr. DePaola and Stott, Robert F. and Leitch, Jerrold M.} } @article {31891, title = {The 1982-83 El Ni{\~n}o and erosion on the coast of Oregon}, journal = {Shore and Beach}, volume = {54}, number = {2}, year = {1986}, note = {Aerial photographs}, month = {April_1986}, pages = {3-12}, keywords = {Alsea River estuary, coastal hazards, El Nino, erosion, hydrology, physical, sediments, wave data, wave height, Yaquina Head}, author = {Komar, Paul D.} } @article {31881, title = {Host-parasite relationships between Gyrodactylus stellatus (monogenea: Gyrodactylidae) and Parophrys vetulus (Pleuronectidae - English sole) from coastal waters of Oregon}, journal = {Journal of Parasitology}, volume = {72}, number = {1}, year = {1986}, month = {1986}, pages = {p.125-129}, keywords = {biological, English sole=Pleuronectes vetulus, fish disease, fishes, Oregon State University Hatfield Marine Science Center, parasites, physiology, population biology, speckled sanddab=Citharichthys stigmaeus, starry flounder=Platichthys stellatus, water temperature, Yaquina Bay}, author = {Kamiso, H. N. and Olson, Robert E.} } @article {31886, title = {Response of the phoxocephalid amphipod, Rhepoxynius abronius, to a small oil spill in Yaquin Bay, Oregon}, journal = {Estuaries}, volume = {9}, number = {4B}, year = {1986}, month = {December_1986}, pages = {p.340-347}, keywords = {amphipods, aquatic invertebrates, crustaceans, physiology, Rhepoxynius abronius, water pollution, Yaquina Bay}, author = {Kemp, Paul F. and Swartz, Richard C. and Lamberson, Janet O.} } @article {31896, title = {The role of estuarine and offshore nursery areas for young English sole, Parophrys vetulus Girard, of Oregon.}, journal = {Fishery Bulletin}, volume = {84}, number = {1}, year = {1986}, month = {1986}, pages = {p.119-132}, keywords = {abundance, biological, catch statistics, developmental stages, English sole=Pleuronectes vetulus, fishes, geographical distribution, physiology, population biology, size composition, temporal distribution, Yaquina Bay}, url = {https://spo.nmfs.noaa.gov/content/role-estuarine-and-offshore-nursery-areas-young-english-sole-parophrys-vetulus-girard}, author = {Krygier, Earl E. and Pearcy, William G.} } @article {31756, title = {Life history and productivity of the phoxocephalid amphipod Rhepoxynius abronius (Barnard)}, journal = {Journal of Crustacean Biology}, volume = {5}, number = {3}, year = {1985}, month = {August_1985}, pages = {449-464}, keywords = {abundance, amphipods, aquatic invertebrates, biological, crustaceans, developmental stages, growth, life history information, physiology, population biology, reproductive behavior, Rhepoxynius abronius, sediments, sex ratio, size composition, statistical analysis, Yaquina Bay}, author = {Kemp, Paul F. and Cole, Faith A. and Swartz, Richard C.} } @article {31616, title = {CBC analysis: comparison of coastal Christmas Bird Counts}, journal = {Oregon Birds}, volume = {10}, year = {1984}, month = {1984}, pages = {p.115-125}, keywords = {abundance, biological, birds, Chetco River estuary, Columbia River estuary, Coos River estuary, Rogue River estuary, Tillamook estuary, Yaquina Bay}, author = {Bayer, Range D. and Krabbe, Jan} } @article {31461, title = {Notes on the marine life of the river lamprey, Lampetra ayresi , in Yaquina Bay, Oregon, and the Columbia River estuary.}, journal = {Fishery Bulletin}, volume = {81}, number = {1}, year = {1983}, month = {1983}, pages = {p.165-167}, keywords = {biological, Columbia River estuary, fishes, geographical distribution, life history information, population biology, river lamprey=Lampetra ayresi, Yaquina Bay}, url = {https://spo.nmfs.noaa.gov/sites/default/files/pdf-content/fish-bull/bond.pdf}, author = {Bond, Carl E. and Kan, Ting T. and Myers, Katherine W.} } @inbook {49741, title = {Juvenile Pacific salmon in estuaries: the life support system}, booktitle = {Estuarine Comparisons : Proceedings of the Sixth Biennial International Estuarine Research Conference, Gleneden Beach, Oregon, November 1-6, 1981}, year = {1982}, note = {This classic work is focused on Nanaimo and Nitinat estuaries and preferred habitats for salmonids. Yaquina and Sixes estuaries are used as points of comparison. }, pages = {p.315-341}, publisher = {Academic Press}, organization = {Academic Press}, address = {New York,}, keywords = {Courtenay River estuary, Cowischan River estuary, feeding behavior, Fraser River estuary, habitats, juvenile fish, life history information, Nanaimo Bay, Nitinat River estuary, nutrition, Pacific salmonids=Oncorhynchus spp., Samass River estuary, Sixes River estuary, sparial distribution, Squamish River estuary, temporal distribution, Yaquina Bay}, author = {Healey, M. C.} } @article {31321, title = {System Strategy for California, Oregon, and Washington Fishing Industry and Public Ports Infrastructure Needs and Assessment: Technical Analysis}, year = {1982}, note = {Ring binder divided into sections. Page numbering starts over with each section. "Prepared for West Coast Fisheries Development Foundation, Portland, Oregon." Describes state of the West Coast groundfish and shellfish fishing industry in the early 1980s. Includes brief description of the Port of Newport and its infrastructure, and fish processing capacity. Reviews the market and summarizes possible approaches for development. Includes maps.}, institution = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service ; Economic Development Administration, }, address = {[Washington, D.C.?] }, keywords = {commercial fisheries - groundfish, commercial fisheries - shellfish, fish, industrial development, ports}, author = {Kramer, Chin \& Mayo, and Natural Resources Consultants, and Ogden Beeman and Associates,} } @inbook {31361, title = {Temporal use of an Oregon estuary by hatchery and wild juvenile salmon}, booktitle = {Estuarine Comparison}, year = {1982}, month = {1982}, pages = {p.377-392}, publisher = {Academic Press}, organization = {Academic Press}, address = {New York}, keywords = {biological, fishes, hatchery salmonids, Pacific salmonids=Oncorhynchus species, temporal distribution, Yaquina Bay}, author = {Myers, Katherine W. and Horton, Howard F.}, editor = {Kennedy, Victo S. (ed.)} } @inbook {30926, title = {Beach processes and erosion problems on the Oregon Coast}, booktitle = {Geologic field trips in Western Oregon and Southwestern Washington}, series = {Bulletin (Oregon. Dept. of Geology and Mineral Industries)}, volume = {no.101}, year = {1980}, note = {Includes road trip log for the Jumpoff Joe area of Newport, Siletz Spit, and Taft area of Lincoln City.}, month = {March_1980}, pages = {p.169-173}, publisher = {Oregon Department of Geology and Mineral Industries}, organization = {Oregon Department of Geology and Mineral Industries}, keywords = {coastal dunes, coastal hazards, environmental education, erosion, geological, Jump-Off Joe, Lincoln City (Or.), paleosciences, Salishan Spit, Siletz Bay, Siletz Spit, Taft (Or.)}, url = {https://www.oregongeology.org/pubs/B/B-101.pdf}, author = {Komar, Paul D. and Schlicker, Herb} } @article {30691, title = {Habitat Classification and Inventory Methods for the Management of Oregon Estuaries. Final Report: Estuary Inventory Project}, volume = {1}, year = {1979}, month = {1979}, institution = {Oregon Department of Fish and Wildlife}, address = {Portland, Or.}, keywords = {Alsea River estuary, biological, Chetco River estuary, Coos River estuary, Coquille River estuary, environmental policy and law, general, habitats, hydrology, natural resource management, Necanicum River estuary, Nehalem River estuary, Nestucca River estuary, Netarts estuary, physical, Rogue River estuary, Salmon River Estuary, Sand Lake Estuary, Siletz River estuary, Siuslaw River estuary, Tillamook estuary, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/defaults/fx719s684}, author = {Bottom, Daniel L. and Kreag, Becky and Ratti, Frank and Roye, Cyndi and Starr, Rick and Oregon. Dept. of Fish and Wildlife. Research and Development Sectiom, and Oregon. Land Conservation and Development Commission,} } @proceedings {30761, title = {Oyster production in the Pacific Northwest}, year = {1979}, note = {Meeting held June 24-27, 1979.}, address = {Univeristy of Manitoba. Winnipeg, Canada}, keywords = {aquaculture, aquatic invertebrates, bivalves, general, molluscs, natural resource management, toxicity, water pollution, Yaquina Bay}, author = {Kolbe, Edward R. and English, Marshall J. and Miner, J. Ronald} } @article {30751, title = {A resource survey of river energy and low-head hydroelectric power potential in Oregon. Appendix 18: mid-coast basin}, volume = {no.61, appendix 18}, year = {1979}, note = {Gives hydro-power potential for reaches in the Salmon River and tributaries, Schooner Creek, Crift Creek, the Siletz River and tributaries, the Yaquina River and tributaries, Beaver Creek, the Alsea River and tributaries, the Yachats River, Tenmile Creek, Big Creek, the Siuslaw River and tributaries, the Siltcoos River and tributaries, and Tahkenitch Creek.}, month = {April_1979}, pages = {71 p.}, institution = {Water Resources Research Institute}, address = {Corvallis, Or.}, keywords = {Alsea Bay, Alsea River, Beaver Creek, Big Creek, Drift Creek (Siletz), hydrology, industrial development, physical, Salmon River, Schooner Creek, Siletz River, Siltcoos River, Siuslaw River, Tahkenitch Creek, Tenmile Creek, Yachats River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/defaults/m900nz718}, author = {Klingeman, Peter C.} } @article {30756, title = {Synopsis report. A resource survey of river energy and low-head hydroelectric power potential in Oregon.}, volume = {no.61}, year = {1979}, month = {April_1979}, institution = {Water Resources Research Institute}, address = {Corvallis, OR}, keywords = {hydrology, industrial development, physical, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/defaults/m900nz718}, author = {Klingeman, Peter C.} } @article {30551, title = {Oregon salmon farm project converts to sea ranching}, journal = {Fish Farming International}, volume = {5}, number = {1}, year = {1978}, note = {Photo report}, month = {1978}, pages = {p.8-11}, keywords = {aquaculture, biological, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, fishes, general, hatchery salmonids, Pacific salmonids=Oncorhynchus species, Port of Newport Dock 2, pulp mill effluent, sockeye salmon=Oncorhynchus nerka, water temperature, Yaquina Bay}, author = {Klopfenstein, Don and Klopfenstein, Inez} } @mastersthesis {30306, title = {Acute Effects of Sedimentation on Cumella vulgaris Hart 1930 (Cumacea)}, year = {1977}, note = {Major professor was Dr. James E. McCauley. }, month = {March_1977}, pages = {62 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {School of Oceanography}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, crustaceans, cumaceans, Cumella vulgaris, dredging, human impacts, Marine Science Center Dock, physical modifications, sediment data, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/3n2042142}, author = {King, Alan R.} } @article {30296, title = {Distribution of diatoms in the plankton of Yaquina estuary, Oregon}, journal = {Journal of Phycology}, volume = {13}, year = {1977}, month = {1977}, pages = {p.379-388}, keywords = {aquatic vegetation, biological, climate, community ecology, Coquille Point, diatoms, estuarine dynamics, hydrology, light, Marine Science Center Dock, mathematical modeling, nitrate-nitrite, phosphate, precipitation, primary production, salinity, silicate, species composition, species list, statistical analysis, temporal distribution, tidal currents, water temperature, Yaquina Bay}, author = {Karentz, Deneb and McIntire, C. David} } @inbook {30396, title = {The macrophytic marine algae of Oregon}, booktitle = {The Marine Plant Biomass of the Pacific Northwest Coast}, year = {1977}, month = {1977}, pages = {p.93-115}, publisher = {Oregon State University Press}, organization = {Oregon State University Press}, address = {Corvallis, Or.}, keywords = {algae, biological}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/5999n4177}, author = {Phinney, Harry K.}, editor = {Krauss, Robert W. (ed.)} } @book {30301, title = {The Siletz Indian Reservation 1855-1900}, series = {Lincoln County Historical Society Publication}, volume = {no.15}, year = {1977}, note = {A republication of Kent{\textquoteright}s 1973 Portland State University thesis.}, month = {1977}, pages = {54 p.}, publisher = {Lincoln County Historical Society}, organization = {Lincoln County Historical Society}, address = {Newport, Or.}, keywords = {Alsea River estuary, general, historical, Siletz River estuary, Yaquina River, Yaquina River Basin}, author = {Kent, William E.} } @book {30081, title = {An Economic Evaluation of Salmonid Fisheries Attributable to Siuslaw National Forest}, year = {1976}, month = {1976}, pages = {12 p.}, publisher = {United States Forest Service, Pacific Northwest Region}, organization = {United States Forest Service, Pacific Northwest Region}, address = {Corvallis, Or.}, keywords = {economics, hatchery salmonids, Siuslaw National Forest, wild salmonids}, author = {Kunkel, Clair and Janik, Phil and United States. Forest Service. Pacific Northwest Region. and Oregon. Siuslaw National Forest} } @article {30076, title = {Oregon coast shoreline changes due to jetties}, journal = {Journal of the Waterways, Harbors and Coastal Engineering Division}, volume = {102}, number = {WW1}, year = {1976}, month = {Feb_1976}, pages = {p.13-30}, keywords = {computer programs, erosion, geological, North Jetty, sediments, South Jetty}, author = {Komar, Paul D. and Lizarraga-Arciniega, Jose ROman and Terich, Thomas A.} } @mastersthesis {29881, title = {The Distribution of Planktonic Diatoms in Yaquina Estuary, Oregon}, year = {1975}, note = {Major professor was C. David McIntire. Masters thesis.}, month = {December_1975}, pages = {137 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Botany and Plant Pathology, Botany}, address = {Corvallis, Or.}, keywords = {aquatic vegetation, biological, chemical, climate, community ecology, diatoms, estuarine dynamics, geographical distribution, hydrology, light, Marine Science Center Dock, mathematical modeling, nitrate-nitrite, phosphate, precipitation, River Mile 7, salinity data, Sawyer{\textquoteright}s Landing, silicate, species composition, species list, temporal distribution, theses, Toledo Airport, water temperature data, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/12579v94n}, author = {Karentz, Deneb} } @article {29896, title = {Distribution, reproduction, and growth of Crangon nigricauda and Crangon franciscorum in Yaquina Bay, Oregon}, journal = {Northwest Science}, volume = {49}, number = {4}, year = {1975}, month = {1975}, pages = {p.216-240}, keywords = {abundance, aquatic invertebrates, blacktail bay shrimp=Crangon nigricauda, California bay shrimp=Crangon franciscorum, crustaceans, decapods, geographical distribution, growth, physiology, population biology, reproductive behavior, salinity data, sex ratio, size composition, temporal distribution, water temperature data, Yaquina Bay}, author = {Krygier, Earl E. and Horton, Howard F.} } @proceedings {29891, title = {Crangon nigricauda and Crangon franciscorum in Yaquina Bay, Oregon}, volume = {65}, year = {1975}, note = {Abstract only}, keywords = {aquatic invertebrates, biological, blacktail bay shrimp=Crangon nigricauda, California bay shrimp=Crangon franciscorum, crustaceans, decapods, growth, physiology, population biology, reproductive behavior, salinity, statistical analysis, temporal distribution, water temperature, Yaquina Bay}, author = {Krygier, Earl E.} } @article {29886, title = {A review of rainbow trout stocking and catch statistics in Oregon streams, 1952-1975}, volume = {no.6}, year = {1975}, month = {June_1975}, pages = {15 p.}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {biological, hatchery salmonids, rainbow trout=Oncorhynchus mykiss (Salmo gairdneri), Yaquina River, Yaquina River Basin}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/7m01bm42k}, author = {Kinunen, Wayne (ed.) and Oregon. Dept. of Fish and Wildlife,} } @article {29921, title = {Shoreline changes due to jetty contruction on the Oregon coast}, volume = {no.75-004}, year = {1975}, note = {This publication is based on the Master of Science thesis published by Jose Roman Lizarraga Arciniega in 1975. Paul Komar was his major professor. Discusses accretion of sand due to jetties and physical settings conducive to erosion. The author developed a computer model to simulate shoreline changes after the construction of the Siuslaw River jetties. "The shoreline advances of the model agreed closely with the actual shoreline changes found in surveys following jetty construction." (from the Abstract) Fig.14 shows advance of the shoreline on the south side of the Yaquina River entrance from 1830 to 1974 (p.41). The thesis is also available online at: https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/3b591c12s}, month = {Septemberr_1975}, pages = {85 p.}, institution = {Oregon State University Sea Grant College Program}, address = {Corvallis, OR}, keywords = {Chetco River, Coos Bay, Coquille River, erosion, jetties, Nehalem River, North Jetty, physical modifications, Rogue River, Siuslaw River, South Jetty, Tillamook Bay, Umpqua River, Yaquina Bay}, url = {https://repository.library.noaa.gov/view/noaa/39192}, author = {Lizarraga Arciniega, Jose Roman and Komar, Paul D.} } @article {29831, title = {Status of private salmon hatcheries in Oregon, 1973-74}, volume = {no.75-1}, year = {1975}, note = {This document describes private salmon hatcheries in Oregon that were rearing chum, coho and Chinook salmon.}, month = {March_1975}, pages = {8 p.}, institution = {Fish Commission of Oregon, Management and Research Division}, keywords = {aquaculture, biological, chum salmon=Oncorhynchus keta, fishes, hatchery salmonids, Oregon Aqua-Foods, Wright Creek, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/h415pb23d}, author = {T. Edwin Cummings and Korn, Lawerence and Oregon. Fish Commission} } @mastersthesis {29876, title = {Systematics, Variation, Distribution, and Biology of Lampreys of the Genus Lampetra in Oregon}, year = {1975}, note = {Major professor was Carl E. Bond. Doctoral thesis. Pacific lamprey was reported at Simpson Creek, a tributary of the Yaquina River. River lamprey was observed in Yaquina Bay, the Yaquina River and Simpson Creek. Western Brook Lamprey was observed at Rock Creek, Big Elk Creek, Flynn Creek and Simpson Creek.}, month = {June_1975}, pages = {194 p.}, school = {Oregon State University}, edition = {Ph. D.}, chapter = {Dept. of Fisheries and Wildlife}, address = {Corvallis, Or.}, keywords = {Alsea River estuary, biological, Columbia River estuary, Coos River estuary, Coquille River estuary, fishes, genetics, geographical distribution, life history information, Necanicum River estuary, Nehalem River estuary, Nestucca River estuary, Pacific lamprey=Lampetra tridentata, physiology, population biology, river lamprey=Lampetra ayresi, Rogue River estuary, Siletz River estuary, Siuslaw River estuary, theses, Tillamook estuary, Western brook lamprey = Lampetra richardsoni, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/1544br289}, author = {Kan, Ting T.} } @mastersthesis {29446, title = {Distribution and Reproductive Biology of Crangon franciscorum (Stimpson) and Crangon nigricauda (Stimpson), in Yaquina Bay, Oregon}, year = {1973}, note = {Major professor was Howard H. Horton. Masters thesis.}, month = {1973}, pages = {76 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fisheries and Wildlife}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, biological, blacktail bay shrimp=Crangon nigricauda, California bay shrimp=Crangon franciscorum, crustaceans, decapods, geographical distribution, life history information, physiology, population biology, reproductive behavior, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/np193c340}, author = {Krygier, Earl Eldon} } @article {29391, title = {General Planning Methodology for Oregon{\textquoteright}s Estuarine Natural Resources}, year = {1973}, month = {March_1973}, pages = {113 p.}, institution = {Oregon State University}, address = {Corvallis, Or.}, keywords = {Alsea River estuary, Coos River estuary, Coquille River estuary, ecological values, environmental policy and law, general, methodology, natural resource management, Nehalem River estuary, Nestucca River estuary, Netarts estuary, Salmon River estuary, Sand Lake Estuary, Siletz River estuary, Siuslaw River estuary, Tillamook estuary, Umpqua River estuary, Yaquina Bay, Yaquina River Basin}, url = {https://www.govinfo.gov/content/pkg/CZIC-gc856-b25-1973/pdf/CZIC-gc856-b25-1973.pdf}, author = {Bella, David A. and Klingeman, Peter C.} } @article {29451, title = {Records of the California tonguefish, threadfin shad and smooth alligatorfish from Yaquina Bay, Oregon}, journal = {California Fish and Game}, volume = {59}, number = {2}, year = {1973}, month = {April_1973}, pages = {p.140-142}, keywords = {biological, California tonguefish=Symphurus africauda, geographic distribution, Sally{\textquoteright}s Bend, smooth allifgatorfish=Anoplagonus inermis, The Bend, threadfin shad=Dorosoma petenense, Yaquina Bay Bridge}, url = {https://www.biodiversitylibrary.org/item/61762$\#$page/3/mode/1up}, author = {Krygier, Earl E. and Johnson, William E. and Bond, Carl E.} } @mastersthesis {29066, title = {A Physical Oceanographic Study of the Nearshore Zone at Newport, Oregon}, year = {1971}, note = {Major professor was Victor T. Neal. Masters thesis.}, month = {June_1971}, pages = {91 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Oceanography}, address = {Corvallis, Or.}, keywords = {coastal upwelling, Davidson current, hydrology, physical, pulp mill effluent, sulphate, theses, tidal currents, tidal data, water pollution, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/9z903294c}, author = {Keene, Donald F.} } @article {28566, title = {A preliminary investigation of the heavy mineral suites of the coastal rivers and beaches of Oregon and northern California}, journal = {The Ore Bin}, volume = {30}, number = {9}, year = {1968}, month = {September_1968}, pages = {p.165-180}, keywords = {Alsea River, Chetco River, Coos River, Coquille River, geological, heavy minerals, hydrology, Kilchis River, Little Nestucca River, Miami River, Millicoma River, Necanicum River, Nehalem River, Nestucca River, North Fork, paleosciences, physical, Rogue River, Salmon River, sediment data, Siletz River, Siuslaw River, Sixes River, Tillamook River, Trask River, Umpqua River, Wilson River, Yaquina River, Yaquina River Basin}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/p26770670}, author = {Kulm, Laverne D. and Scheidegger, K. F. and Byrne, John V. and Spigai, J. J.} } @article {28456, title = {Persistence of carbaryl in the marine estuarine environment. Chemical and biological stability in aquarium systems}, journal = {Journal of Agricultural and Food Chemistry}, volume = {15}, year = {1967}, month = {Jan.-Feb.1967}, pages = {p.148-156}, keywords = {amphipods, biological, bivalves, chemical, crustaceans, Oregon State University Hatfield Marine Science Center, sediments, segmented worms, Sevin}, author = {Karinen, J.F. and Lamberton. J.G. and Stewart, Nelson E. and Terriere, L.C.} } @book {28461, title = {Sediments of Yaquina Bay, Oregon}, series = {Estuaries [conference papers]}, volume = {83}, year = {1967}, note = {Excellent data maps. Many sampling locations - see page 230.}, month = {1967}, pages = {p.226-238}, publisher = {American Association for the Advancement of Science}, organization = {American Association for the Advancement of Science}, chapter = {p.226-238}, address = {Washington, D.C.}, keywords = {climate, coastal dunes, Elk City, estuarine dynamics, general ecosystem description, geological, hydrology, Idaho Flats, Oneatta Point, physical, precipitation, salinity, Sally{\textquoteright}s Bend, sediment data, Yaquina Bay, Yaquina Head, Yaquina River, Yaquina River Basin}, url = { }, author = {Kulm, Laverne D. and Byrne, John V.}, editor = {Lauff, George H. (ed.)} } @article {28486, title = {Shellfish investigations: April 1, 1966 - March 31, 1967}, volume = {no.38}, year = {1967}, note = {This document is a report on shellfish investigations from April 1966-March 1967. It includes the bay clam abundance/age growth surveys, with emphasis on the Yaquina, Umpqua, and Coos Bays. The study on life history for the cockle clam is discussed. The report goes over razor clams harvest numbers and age composition. It includes information for the cooperative cruise with California to study crabs, as well as condition sampling and commercial production numbers for crabs. The report concludes with an update on the intertidal animals and the issuing of collection permits. October, 1967.}, pages = {18 p.}, institution = {[Fish Commission of Oregon]}, keywords = {abundance, age composition, aquaculture, aquatic invertebrates, biological, bivalves, breakwater, commercial fisheries - shellfish, Coos River estuary, crustaceans, decapods, dredging, edible oyster=Ostrea edulis, fat gaper=Tresus capax, growth, human impacts, Idaho Point, life history information, molluscs, Nehalem River estuary, Nestucca River estuary, Netarts estuary, Nuttall cockle=Clinocardium nuttallii, Oregon Fish Commission Research Laboratory, Pacific littleneck=Leukoma staminea, physical modifications, population biology, recreational fisheries - shellfish, salinity data, Sally{\textquoteright}s Bend, Siuslaw River estuary, softshell clam=Mya arenaria, Umpqua River estuary, water pollution, water temperature data, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/hq37vp30d}, author = {Snow, C. Dale and Reed, Paul H. and Demory, Darrel and Neilsen, John R. and DeBen, Waldemar and Kaiser, Alan and Osis, Laimons and Oregon. Fish Commission} } @mastersthesis {28351, title = {Effects of Variations in Salinity and Temperature on Some Estuarine Macro-Algae}, year = {1966}, note = {Major professor was Harry K. Phinney. Doctoral dissertation.}, month = {August_1966}, pages = {157 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = { Dept. of Botany and Plant Pathology, Botany}, address = {Corvallis, Or.}, keywords = {Alaria marginata, aquatic vegetation, biological, climate, Coast Guard Station, Coquille Point, Criteser{\textquoteright}s Marina, dichotomous key, Enteromorpha species, estuarine dynamics, general ecosystem description, geographical distribution, Gigartina californica, green algae, hydrology, Idaho Point, Iridaea splendens, King Slough, Laminaria saccharina, Marine Science Center Dock, McLean Point, North Jetty, Odonthalia floccosa, Oneatta Point, physical, Port of Newport Dock 1, Port of Newport Dock 3, Port of Newport Dock 5, Port of Newport Dock 7, precipitation data, River mile 10, River mile 11, salinity data, Sargassum muticum, South Jetty, species list, temporal distribution, theses, tidal currents, Toledo Airport, turbidity, Ulva species, water temperature data, Weiser Point, Winant, wind data, Yaquina Bay, Yaquina Bay Bridge, Yaquina River, Yaquina River Basin}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/1j92gb29s}, author = {Kjeldsen, Chris K.} } @article {28356, title = {Sedimentary response to hydrography in an Oregon estuary}, journal = {Marine Geology: International Journal of Marine Geology, Geochemistry and Geophysics}, volume = {4}, number = {2}, year = {1966}, note = {Excellent data maps}, month = {April_1966}, pages = {p.85-118}, keywords = {climate, estuarine dynamics, general ecosystem description, geological, heavy minerals, hydrology, Lower Yaquina River, nitrogen, organic carbon, physical, salinity data, sediment data, tidal currents, Yaquina Bay}, author = {Kulm, Laverne D. and Byrne, John V.} } @article {28236, title = {Preliminary results on the seasonal size distribution of Mytilicola orientalis and the effect of this parasite on the condition of the Pacific oyster, Crassostrea gigas}, journal = {Journal of the Fisheries Research Board of Canada }, volume = {22}, number = {4}, year = {1965}, pages = {1099-1101}, keywords = {aquaculture, aquatic invertebrates, copepods, crustacea, growth, molluscs, Mytilicola orientalis, Pacific oyster = Crassostrea gigas, parasites, size composition}, author = {Chew, K. K. and Sparks, A. K. and Katkansky, S. C.} } @mastersthesis {28261, title = {Sediments of Yaquina Bay, Oregon}, year = {1965}, note = {Major professor was Dr. John V. Byrne. Doctoral dissertation. Includes sediment and bathymetry maps, bw photographs.}, month = {1965}, pages = {184 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Oceanography}, address = {Corvallis, Or.}, keywords = {geological, hydrology, Oneatta Point, physical, salinity data, sediment data, theses, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/0v8383459}, author = {Kulm, Laverne Duane} } @book {28221, title = {Report on the incidence and pathology of Mytilicola in oysters}, year = {1964}, month = {January_1964}, pages = {28 p.}, publisher = {Fisheries Research Institute, College of Fisheries, University of Washington}, organization = {Fisheries Research Institute, College of Fisheries, University of Washington}, address = {Seattle, WA}, keywords = {bay mussel=Mytilus edulis, biological, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Pacific oyster=Crassostrea gigas, parasites, salinity data, water temperature data, Yaquina City}, author = {Sparks, Albert K. and Chew, Kenneth K. and Katkansky, Stanley C.} } @mastersthesis {54841, title = {Succession and Certain Adaptive Features of Plants Native to the Sand Dunes of the Oregon Coast}, year = {1963}, note = {Doctoral dissertation. In this interesting look at the vegetation of Oregon sand dunes, the author identifies nine different plant communities that represent different stages of plant succession on the dunes. The author also examined the effects of salt spray on dune plants. Includes b+w photographs. Major professor was William W. Chilcote.}, pages = {149 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Botany and Plant Pathology, Botany}, address = {Corvallis, Or.}, keywords = {Alsea Bay, China Creek, Florence (Or.), geographical distribution, plant succession, salinity, sand dunes, Sand Lake, Siltcoos Creek, Siuslaw River estuary, species list, Tenmile Creek, terrestrial vegetation, theses, Yaquina Bay, zonal distribution}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/n009w536s}, author = {Kumler, Marion Lawrence} } @article {28111, title = {Hydrographic data from Oregon coastal waters June 1960 through May 1961}, volume = {no.7}, year = {1962}, note = {Publication also carries numbering in the series Reference / Oregon State University. Dept. of Oceanography ; no. 62-6.}, pages = {77 p.}, institution = {Department of Oceanography, Oregon State University}, address = {Corvallis, Or.}, keywords = {Columbia River estuary, Coos River estuary, dissolved oxygen data, hydrology, light data, physical, salinity data, turbidity data, water temperature data, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/td96k396s}, author = {Wyatt, Bruce and Kujala, Norman F.} } @article {28046, title = {Acute toxicity of some organic insecticides to three species of salmonids and to the threespine stickleback}, journal = {Transactions of the American Fisheries Society}, volume = {90}, number = {3}, year = {1961}, month = {July_1961}, pages = {p.264-268}, keywords = {biological, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, fishes, Pacific salmonids=Oncorhynchus species, pesticides, physiology, rainbow trout=Oncorhynchus mykiss (Salmo gairdneri), threespine stickleback=Gasterosteus aculeatus, toxicity, Yaquina Bay, Yaquina River}, author = {Katz, Max} } @article {28051, title = {Toxicity of endrin to some Pacific Northwest fishes}, journal = {American Fisheries Society Transactions}, volume = {90}, number = {4}, year = {1961}, month = {October_1961}, pages = {p.394-403}, keywords = {Big Elk Creek, bioassay, biological, chemical, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, developmental stages, endrin, Pacific salmonids=Oncorhynchus species, pesticides, physiology, reproductive behavior, steelhead=Oncorhynchus mykiss (rainbow trout=Salmo gairdneri), threespine stickleback=Gasterosteus aculeatus, toxicity, water temperature data, Yaquina Bay, Yaquina River}, author = {Katz, Max and Chadwick, George} } @proceedings {27426, title = {A new cetothere from the Miocene Astoria Formation of Newport, Oregon}, volume = {no.447}, year = {1934}, note = {excellent photographs and drawings}, publisher = {Carnegie Institution of Washington}, keywords = {cetaceans, Desmatophoca oregonensis, geological, marine mammals, paleosciences, Yaquina Bay, Yaquina River, Yaquina River Basin}, author = {Packard, Earl L. and Kellogg, Remington} } @article {27351, title = {Development of oyster industry of the Pacifc}, journal = {Transactions of the American Fisheries Society}, volume = {58}, year = {1928}, month = {1928}, pages = {p.117-122}, keywords = {biological, commercial fisheries - shellfish, eastern oyster=Crassostrea virginica, historical, kumamoto oyster=Crassostrea sikamea, Olympia oyster=Ostrea lurida (Ostrea conchaphila)}, author = {Kincaid, Trevor B} } @article {27091, title = {Mollusks of the San Francisco markets}, journal = {The Nautilus}, volume = {4}, number = {9}, year = {1891}, month = {January_1891}, pages = {97-100}, keywords = {biological, commercial fisheries - shellfish, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Yaquina Bay}, url = {https://www.biodiversitylibrary.org/item/45404$\#$page/5/mode/1up}, author = {Keep, Josiah} }