@article {83191, title = {Estimating juvenile salmon estuarine carrying capacities to support restoration planning and evaluation}, journal = {Estuaries and Coasts }, volume = {46}, year = {2023}, note = {What is the carrying capacity of salmon habitat in a time of global warming and rising sea levels? To answer this question, the authors of this paper took a hard dive into the literature, involving over 4,500 printed estimates of densities of juvenile salmonids in estuaries and floodplains. This data was then used in a habitat expansion approach to estimate historic, current potential and predicted population densities after sea level rise. {\textquotedblleft}We demonstrate the habitat expansion approach by applying the quantiles of observed juvenile Chinook salmon (Oncorhynchus tshawytscha) and coho salmon (O. kisutch) densities (fish/ha) to spatial data describing current, historical or potential, and predicted (based on seal level rise) habitat extents for 16 coastal Oregon estuaries to estimate carrying capacities{\textquotedblright} (from the Abstract). This information will be important in the design and evaluation of restoration projects. This is an open-access article.}, month = {2023}, pages = {p.1046{\textendash}1066}, keywords = {Alsea Bay, Chetco River, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, Elk River, juvenile fish, natural resource management, Necanicum River, Nehalem River, Nestucca Bay, Rogue River, Salmon River, sea levels, Siletz Bay, Siuslaw River, Sixes River, Tillamook Bay, Umpqua River, Yaquina Bay}, doi = {https://doi.org/10.1007/s12237-023-01185-y }, url = {https://link.springer.com/article/10.1007/s12237-023-01185-y}, author = {Hall, Jason and Roni, Phil and Ross, Kai and Camp, Meghan J. and Nuckols, Jason and Ruffing, Claire} } @article {83251, title = {Northwest Forest Plan: The first 25 years (1994-2018): Watershed condition status and trends}, volume = { no.PNW-GTR-1010}, year = {2023}, note = {"This report describes status and trends in watershed condition across the Northwest Forest Plan (NWFP) area over the first 25 years since its inception in 1994. The program charged with this task is the Aquatic and Riparian Effectiveness Monitoring Program (AREMP), which has assembled information from field data collection, spatial datasets, and a host of landscape models to evaluate the status and trends in aquatic resources in streams and watersheds. Field data included hydrologic measurements (stream wetted widths and temperatures), geomorphic responses (instream wood and sediment), and biological responses (macroinvertebrates and aquatic organism passage){\textquotedblright} (from the Abstract). Forest manager{\textquoteright}s efforts have shown incremental progress in improving aquatic conditions in Federal forests, but in a context of climate change. More planning and adaptions in monitoring methods are warranted.}, month = {2023, Jun.}, pages = {165 p.}, institution = {Pacific Northwest Research Station}, address = {Portland, Or. }, keywords = {climate, environmental law and policy, erosion, general, hydrology, landslides, large woody debris, logging, Pacific Northwest, precipitation, riparian areas, sediment, terrestrial vegetation, water temperature}, url = {https://www.fs.usda.gov/pnw/pubs/pnw_gtr1010.pdf }, author = {Dunham, Jason and Hirsch, Christine and Gordon, Sean and Flitcroft, Rebecca and Chelgren, Nathan and Snyder, Marcia and Hockman-Wert, David and Reeves, Gordon and Andersen, Heidi and Anderson, Scott and Battaglin, William and Black, Tom and Brown, Jason and Claeson, Shannon and Hay, Lauren E. and Heaston, Emily and Luce, Charles and Nelson, Nathan and Penn, Colin and Raggon, Mark and Pacific Northwest Research Station.} } @article {83190, title = {Oregon shellfish farmers: Perceptions of stressors, adaptive strategies, and policy linkages}, journal = {Ocean and Coastal Management}, volume = {234}, number = {106475}, year = {2023}, note = {The demand for oysters in the United States exceeds supply, marking the oyster growing as an industry meriting support. On the west coast, growers must cope with climate change, particularly ocean acidification, as well as regulatory problems and labor shortages. In order to help resource managers help oyster farmers, the authors of this paper went to the growers. In 2022, they conducted detailed interviews with Oregon oyster growers, and their comments abundantly populate this paper. {\textquotedblleft}To expand and enhance United States oyster production, and support domestic food security and livelihoods, a better understanding of the limitations that oyster farmers{\textquoteright} experience, and corresponding pathways forward for adaptation is needed. Through semi-structured interviews conducted with commercial Oregon shellfish farmers, we assess the environmental, economic, social and regulatory stressors impacting oyster growing operations, and the corresponding adaptive strategies employed or envisioned by aquaculture farmers{\textquotedblright} (from the Abstract). The authors note adaptive strategies oyster growers adopt to cope, and advocate for more targeted outreach to support the oyster growers.}, month = {2023}, pages = {15 p.}, keywords = {aquaculture, aquatic invertebrates, bivalves, climate, commercial fisheries {\textendash} shellfish, Coos Bay, economics, environmental law and policy, mollusks, Netarts Bay, ocean acidification, oysters, South Slough, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, doi = {https://doi.org/10.1016/j.ocecoaman.2022.106475 }, author = {Green, Kristen Marie and Spalding, Ana K. and Ward, Melissa and Levine, Arielle and Wolters, Erika Allen and Hamilton, Sara Luanne and Rice, Lauren} } @article {83195, title = {Restoring Sea Otters to the Oregon Coast: A Feasibility Study}, year = {2023}, note = {When sea otters were exterminated in Oregon, there was no predator to stop the sea urchin population from expanding. Sea urchins eat kelp. More urchins mean less kelp. Less kelp means that many animals lose valuable habitat. Nearshore waters become rougher, because kelp beds cause the seas to lie down. The post-otter environment is less diverse and less hospitable. The Elakha Alliance (named for the Chinook Jargon word for sea otter) has been formed to realize the vision of bringing the sea otter back to Oregon. This book is about their dream. The authors have meticulously examined multiple aspects of the problem, from environmental to legal, and conclude that it is possible to bring otters back. Interestingly, estuaries may provide valuable launching grounds, offering more protection than the open sea. As keystone predators, sea otters would help restore an environment badly out of balance, and would provide many benefits aside from being adorable. As they say, the best dreams happen when we are awake. Colored maps, colored pictures.}, month = {2023}, pages = {249 p.}, institution = {Elakha Alliance}, edition = {2nd ed.}, address = {Siletz, Or.}, keywords = {Coos Bay, economics, ecosystem health, environmental law and policy, genetics, habitats, histology, historical, human impacts, marine mammals, population biology, Reintroductions, Sea otter = Enhydra lutris, sociology, Tillamook Bay, Translocations, Yaquina Bay}, url = {https://www.elakhaalliance.org/feasibility-study/ }, author = {Tinker, M. Tim and Estes, James and Bodkin, James and Larson, Shawn and Murray, Mike and Hodder, Jan and Elakha Alliance.} } @article {83188, title = {Discovery of a large offshore population of the northeast Pacific burrowing shrimp Neotrypaea sp. (Decapoda: Axiidea)}, journal = {Estuarine, Coastal and Shelf Science}, volume = {274}, number = {107936}, year = {2022}, note = {The ghost shrimp, Neotrypaea spp., has long been known as a burrower in soft estuarine sediments. While scattered numbers of ghost shrimp were found on the continental shelf, they were believed to be strays from estuaries; that is, until 2019, when a large population of ghost shrimp was found on the continental shelf off Newport in waters 58-77 meters deep. The offshore population was thought to be giant ghost shrimp (Neotrypaea gigas), known to be present in Yaquina Bay, but not often written about. This population has multiple years and multiple size classes. {\textquotedblleft}This is the first report of a major burrowing shrimp population on the continental northeast Pacific coastal ocean{\textquotedblright} (from the Abstract). Is a native species expanding or shifting its habitats in response to climate or other anthropogenic change? Or does this find represent an introduction of a new species? Stay tuned{\textellipsis} This is an open-access article.}, month = {2022}, pages = {11 p.}, keywords = {Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), Giant ghost shrimp = Neotrypaea gigas, habitats, morphology, sediments, taxonomy, water temperature, Willapa Bay, Yaquina Bay}, doi = {https://doi.org/10.1016/j.ecss.2022.107936 }, url = {https://www.sciencedirect.com/science/article/abs/pii/S0272771422001949?via\%3Dihub}, author = {Henkel, Sarah K. and Revelas, Eugene C. and Wodzicki, Stefan and Chapman, John} } @mastersthesis {83187, title = {Morphology, Sediment Microbial Analysis, and Species Distribution Modeling of a New Offshore Population of Ghost Shrimp (Neotrypaea sp.)}, year = {2022}, note = {Ghost shrimp (Neotrypaea spp.) are typically seen as burrowing species in estuaries. In 2019, after years of abnormally warm offshore waters, a population of ghost shrimp was discovered about 7 miles offshore of Newport, Oregon. The author of this Master{\textquoteright}s thesis attempts to answer some questions about the newly revealed enclave. Was the new population a new species? Examination revealed that the offshore ghost shrimp closely resembled the giant ghost shrimp, which is found in Yaquina Bay, except for the eyestalk. Could the sediment microbial communities in the new deep-water habitat support the shrimp? Researchers learned that, {\textquotedblleft}Bacteria of the genus Shewanella, which have been shown to induce oyster and mussel settlement and metamorphosis, were found in both the estuary and offshore locations and in five times greater abundance with Neotrypaea than without{\textquotedblright} (from the Abstract). Finally, the author attempted to predict where other offshore populations of ghost shrimp might be found, and found clusters off Nehalem and Nestucca estuaries. The major professor was Sarah K. Henkel.}, month = {2022}, pages = {81 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Integrative Biology}, address = {Corvallis, Or.}, keywords = {bacteria, Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), Giant ghost shrimp = Neotrypaea gigas, habitats, Microbiome, morphology, Nehalem River, Nestucca River, sediments, taxonomy, water temperature, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/s4655q555 }, author = {Hardisty, Sarah} } @article {83189, title = {Nonfishing impacts on essential fish habitat}, volume = {no.2022-01}, year = {2022}, note = {Many human activities that are not directly related to fishing can harm essential fish habitat. This publication looks at 19 different human activities that can damage essential fish habitat, from climate change to forest management to noise pollution, and more. The authors describe for each activity what is known to affect essential fish habitat, potential impacts, {\textquotedblleft}and provide proactive conservation measures designed to minimize or avoid them{\textquotedblright} (from the Plain Language Summary).}, month = {2022, Dec.}, pages = {258 p.}, institution = {National Marine Fisheries Service}, address = {Seattle, Wash.}, keywords = {agriculture, Alsea River, aquaculture, climate, dams, dredging, energy, general, industrial development, Industrial waste, logging, mining, Noise, oil spills, Oregon Coast, ports, Sewage, shipping, Yaquina River}, doi = {https://doi.org/10.25923/zxz1-m712}, url = {https://repository.library.noaa.gov/view/noaa/48083/noaa_48083_DS1.pdf }, author = {Kiffney, Peter and Thompson, Jamie and Blaud, Brianna and Hoberecht, Laura} } @article {83182, title = {A doubled down invasion of the northeast Pacific by the Asian mud shrimp, Upogebia major, and its coevolved bopyrid isopod parasite, Orthione griffenis}, journal = {Aquatic Invasions}, volume = {16}, number = {4}, year = {2021}, note = {The blue mud shrimp, Upogebia pugettensis, is known to be an ecosystem engineer, turning over and re-suspending, and aerating sediments (bioturbation), burrowing, and deposit feeding. The mud shrimp affects organic structure, nutrients, and the grain size of sediments in mudflats. Some of this activity creates difficulties for oyster growers, causing the application of pesticides in oyster growing areas in the 1950s. It may be that the changes in the ecosystem caused by introduced oysters and pesticides opened the doors for subsequent invasions. In 1999, a parasitic isopod was discovered to be infecting the native mud shrimp, and effectively sterilizing the shrimp. A related species, the Asian mud shrimp. Upogebia major, is less susceptible to the parasite, and has begun to fill in spaces formerly occupied by the blue mud shrimp. While this article is concerned with mud shrimp populations in California, the dynamics discussed are relevant to Oregon estuaries. If the ways our estuaries are engineered changes thanks to the double invasion, the way we manage our estuaries will also have to change. This is an open-access article, and it has also been re-printed as no.21-021 in the ORESU-R series.}, month = {2021}, pages = {p.721{\textendash}749}, keywords = {Alsea Bay, Asian mud shrimp Upogebia major, bioturbation, community ecology, Coos Bay, depleted populations, Griffen{\textquoteright}s isopod = Orthione griffensis, introduced species, Mud shrimp = Upogebia pugettensis, natural resource management, Nestucca Bay, Netarts Bay, Upogebia macginitieorum, Yaquina Bay}, doi = {https://doi.org/10.3391/ai.2021.16.4.09}, url = {https://ir.library.oregonstate.edu/concern/articles/k643b826b }, author = {Chapman, John W. and Li, Jingchun and McGowan, Michael F. and Breitenstein, Ralph A. and Appy, Ralph and Hieb, Kathryn A. and Piotrowski, Christina N. and Elder, Leanne E.} } @article {83058, title = {Exploring biophysical linkages between coastal forestry management practices and aquatic bivalve contaminant exposure}, journal = {Toxics }, volume = {9}, number = {3}, year = {2021}, note = {Current forestry management practices are not doing very well at keeping herbicides and pesticides within the boundaries of the forest. In this important article, the authors describe a study of bivalves to look for contamination from pesticides and other chemicals used in forestry. They found pesticides in 38\% of bivalves sampled, with some watersheds more contaminated than others, and with seasonal variations. The authors mildly note, {\textquotedblleft}Details about types and levels of exposure provide insight into effectiveness of current forest management practices in controlling transport of forest-use pesticides{\textquotedblright} (from the Abstract). Good data visualization. This is an Open-Access article.}, month = {2021, Mar.}, pages = {article 46, 25 p. }, keywords = {agriculture, Alsea River, aquatic invertebrates, bivalves, clams, commercial fisheries - shellfish, Coos Bay, forestry, fungicides, herbicides, human impacts, metabolism, molluscs, mussels, Nehalem River, Nestucca River, oysters, Pacific oyster = Crassostrea gigas, pesticides, precipitation, recreational fisheries {\textendash} shellfish, Siletz River, Siuslaw River, Smith River (Umpqua), Softshell clam = Mya arenaria, stress, toxicity, Western pearl mussel = Margaritifera falcata, Yaquina River}, doi = {https://doi.org/10.3390/toxics9030046}, url = {https://www.mdpi.com/2305-6304/9/3/46 }, author = {Scully-Engelmeyer, Kaegan and Granek, Elise F. and Nielsen-Pincus, Max and Lanier, Andy and Rumrill, Steven S. and Moran, Patrick and Nilsen, Elena and Hladik, Michelle L. and Pillsbury, Lori} } @article {83114, title = {A maximum rupture model for the central and southern Cascadia subduction zone{\textemdash}reassessing ages for coastal evidence of megathrust earthquakes and tsunamis}, journal = {Quaternary Science Reviews}, volume = {261 }, number = {106922}, year = {2021}, note = {{\textquotedblleft}A new history of great earthquakes (and their tsunamis) for the central and southern Cascadia subduction zone shows more frequent (17 in the past 6700 yr) megathrust ruptures than previous coastal chronologies.{\textquotedblright} (from the Abstract) The article contains a link to supplementary data, also accessible through U.S. Geological Survey data releases.}, month = {2021, Jun.1}, pages = {19 p.}, keywords = {Alsea Bay, coastal hazards, Columbia River, Coos Bay, Coquille River, earthquakes, geology, mathematical modeling, Nehalem River, Nestucca Bay, Netarts Bay, paleosciences, Siletz Bay, Siuslaw River, tsunamis, Yaquina Bay}, doi = {https://doi.org/10.1016/j.quascirev.2021.106922 }, author = {Nelson, Alan R. and DuRoss. Christopher B. and Witter, Robert C. and Kelsey, Harvey M. and Engelhart, Simon E. and Mahan, Shannon A. and Gray, Harrison J. and Hawkes, Andrea D. and Horton, Benjamin P. and Padgett, Jason S.} } @article {83098, title = {Oregon Water Futures Project Report: 2020-21 Community Engagement}, year = {2021}, note = {This document is a most interesting look at water quality concerns held by groups whose voices are often unheard. {\textquotedblleft}The Oregon Water Futures Project is a collaboration between the University of Oregon, water and environmental justice interests, Indigenous peoples, communities of color, and low-income communities. Through a water justice lens, we aim to impact how the future of water in Oregon is imagined through storytelling, capacity building, relationship building, policymaking, and community-centered advocacy at the state and local level. In 2020, project partners co-conceptualized and facilitated a series of conversations with Native, Indigenous Latin American, Latinx, Black, Southeast Asian, Pacific Islander, Middle Eastern, Arab, and Somali communities, including webinars on Oregon water systems, phone interviews, and virtual online gatherings{\textquotedblright} (from the Abstract). Well illustrated.}, pages = {106 p.}, institution = {University of Oregon}, address = {Eugene, Or.}, keywords = {ecological values, environmental education, flooding, water availability, water quality}, url = {https://scholarsbank.uoregon.edu/xmlui/handle/1794/26599 }, author = {Reyes-Santos, Ala{\'\i} and Holliday, Cheyenne and Dalgaard, Stacey and Evans, Taren and Witherill, Kristiana Teige} } @article {83178, title = {Murre populations in flux: what factors affect seabird reproductive success?}, volume = {no.20-006}, year = {2020}, note = {This lesson plan for 11th and 12th graders uses the common murre population at Yaquina Head to introduce students to important concepts such as food web processes, environmental change, trophic level basics, biological monitoring practices, and population dynamics. {\textquotedblleft}The reproductive success of common murres at Yaquina Head Outstanding Natural Area varies from year to year. Students will learn how researchers monitor seabird populations and explore data to determine how seabird reproductive success is connected to environmental conditions and trophic relationships{\textquotedblright} (from the Overview). Use of scientific datasets and critical thinking skills are emphasized.}, pages = {5 p.}, institution = {Oregon State University. Sea Grant College Program}, address = {Corvallis, Or.}, keywords = {Biological monitoring, common murre = Uria aalge, ecosystem modeling, environmental monitoring, feeding behavior, habitats, population biology, reproductive biology, Yaquina Head Outstanding Natural Area}, url = {https://ir.library.oregonstate.edu/concern/defaults/6w924k31d }, author = {Haxel, Jesica} } @article {82984, title = {Status of the European Green Crab, Carcinus maenas, in Oregon and Washington Coastal Estuaries in 2019}, year = {2020}, note = {The invasive European green crab is a voracious predator of bivalve molluscs, small crustaceans and other organisms. It has been present in Oregon since the late 1990s. The population grows when winter waters are warm, as they are during El Ni{\~n}os. {\textquotedblleft}After the arrival of a strong year class in 1998, significant recruitment to the populations occurred only in2003,2005,2006,2010, 2015, 2016, 2017, 2018 and 2019. Warm winter water temperatures, high Pacific Decadal Oscillation (PDO) and Multivariate ENSO (El Ni{\~n}o Southern Oscillation) Indices, and a high abundance of southern copepods are all correlated with strong year classes and vice versa. . . Prior to 2015, green crabs were too rare (<0.2 per trap) to exert measurable effects on the native benthic community and on shellfish culture in Oregon and Washington. But after the 2015-2016 El Ni{\~n}o, we document the arrival of five strong year classes. Average catches steadily increased from 0.5 crabs per trap, in 2015 to around 3 crabs per trap in 2017 to 2019. The catches in the last 3years are much higher than in any of the previous years, including 1998. Catches in some hotspots exceed 10 crabs per trap, a level at which measurable ecological impact can be expected. . . Since green crabs live for 6 years, these five consecutive year classes can produce larvae until 2025.{\textquotedblright} (from the Executive Summary) Coos Bay, in particular, has experienced shocking growth of this population, going from 9 crabs captured in 2002 to 1,397 crabs captured in 2019. This report is accompanied by a dataset, available at: https://ir.library.oregonstate.edu/concern/datasets/028712995 }, pages = {31 p.}, institution = {Pacific States Marine Fisheries Commission. Aquatic Nuisance Species Project}, address = {Portland, Or.}, keywords = {Alsea Bay, aquatic invertebrates, Coos Bay, Coquille River estuary, crustaceans, El Ni{\~n}o, European green crab = Carcinus maenas, introduced species, Nehalem Bay, Netarts Bay, Pacific Decadal Oscillation, population count, Tillamook Bay, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/xk81js14x }, author = {Yamada, Sylvia Behrens, and Schooler, Shon and Heller, Renee and Donaldson, Luke and Takacs, Graham T. and Randall, Andrea and Buffington, Chelsey and Akmajian, Adrianne} } @article {83113, title = {Temporal and habitat differences in the juvenile demersal fish community at a marine-dominated northeast Pacific estuary}, journal = {Fisheries Research}, volume = {227}, number = {105557}, year = {2020}, note = {Estuaries provide habitat for many juvenile marine fishes. A lack of systematic studies of fish communities in estuaries has hampered our understanding of estuaries{\textquoteright} roles in the early life histories of many marine fish. In this article, the authors compare the community structure of juvenile fishes in the Yaquina Estuary for 2008-2009, 2012-2013 and 2016-2017. Sampling took place around docks and eelgrass beds. {\textquotedblleft}Greater abundances and reduced change in communities over time at eelgrass sites suggests that maintaining these habitats is potentially critical for many estuary-rearing species and temporal changes in these communities highlights the importance of long-term monitoring.{\textquotedblright} (from the Abstract)}, month = {2020, Jul.}, pages = {11 p.}, keywords = {community ecology, eelgrass = Zostera marina, habitats, juvenile fishes, Pacific Decadal Oscillation, Pacific staghorn sculpin = Leptocottus armatus, Rockfish = Sebastes spp., Saddleback gunnel = Pholis ornata, salinity, temporal distribution, upwelling, water temperature, Yaquina Bay}, doi = {https://doi.org/10.1016/j.fishres.2020.105557 }, author = {Schwartzkopf, Brittany D. and Whitman, Alison D. and Lindsley, Amy J. and Heppell, Scott A.} } @article {82621, title = {Climate vulnerability assessment for Pacific salmon and steelhead in the California Current Large Marine Ecosystem}, journal = {PLoS One}, volume = {14}, number = {7}, year = {2019}, note = {This article is a major scientific overview of the vulnerability of Pacific Coast anadromous salmonids to climate change. {\textquotedblleft}Nearly all listing units faced high exposures to projected increases in stream temperature, sea surface temperature, and ocean acidification. . . Anthropogenic factors, especially migration barriers, habitat degradation, and hatchery influence, have reduced the adaptive capacity of most steelhead and salmon populations. Enhancing adaptive capacity is essential to mitigate for the increasing threat of climate change. Collectively, these results provide a framework to support recovery planning that considers climate impacts on the majority of West Coast anadromous salmonids{\textquotedblright} (from the Abstract). Projections were made about Oregon coast coho salmon.}, pages = {e0217711}, edition = {2019, Jul. 24}, keywords = {Oregon Coast, Pacific salmonids = Oncorhynchus spp., Coho salmon = Oncorhynchus kisutch, climate change, depleted populations, ecosystem health, endangered species, habitats, hatcheries, human impacts, life history, ocean acidification, water temperatur}, doi = {https://doi.org/10.1371/journal.pone.0217711 }, url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0217711 }, author = {Crozier, Lisa G. and McClure, Michelle M. and Beechie, Tim and Bograd, Steven J. and Boughton, David A. and Carr, Mark and Cooney, Thomas D. and Dunham, Jason B. and Greene, Correigh M. and Haltuch, Melissa A. and Hazen, Elliott L. and Holzer, Damon M. and Huff, David O. and Johnson, Rachel C. and Jordan, Chris E. and Kaplan, Isaac C. and Lindley, Steven T. and Mantua, Nathan J. and Moyle, Peter B. and Myers, James M. and Nelson, Mark W. and Spence, Brian C. and Weitkamp, Laurie A. and Williams, Thomas H. and Willis-Norton, Ellen} } @article {82911, title = {Evidence for regional-scale controls on eelgrass (Zostera marina) and mesograzer community structure in upwelling-influenced estuaries}, journal = {Limnology and Oceanography}, volume = {64}, number = {3}, year = {2019}, note = {{\textquotedblleft}In estuaries of the U.S. Pacific Northwest coast, eelgrass (Zostera marina ) ecosystems are exposed to latitudinally varying oceanographic inputs in the form of ocean upwelling. Previous research suggests that ocean upwelling is critical to eelgrass and ulvoid macroalgae abundance, but the degree to which secondary producers are controlled by processes at regional vs. local scales is unknown. Here, we consider the relationships among primary producers (eelgrass, ulvoid macroalgae, and epiphytic microalgae), epifaunal mesograzers, and mesopredator fish within and across three Oregon, U.S.A., estuaries during a spring{\textendash}summer season to examine the role of multiple scales in structuring these communities.{\textquotedblright} (from the Abstract) Suppplementary material in a separate file accompanies this article.}, month = {2019, May}, pages = {p.1120-1134}, keywords = {algae, community ecology, Coos Bay, eelgrass = Zostera marina, eutrophication, fish, Grazing, Netarts Bay, primary production, Ulva spp., upwelling, Yaquina Bay}, doi = {https://doi.org/10.1002/lno.11102 }, author = {Hayduk, Jennifer L. and Hacker, Sally D. and Henderson, Jeremy S. and Tomas, Fiona} } @article {83230, title = {Headwater streams and wetlands are critical for sustaining fish, fisheries, and ecosystem services}, journal = {Fisheries}, volume = {44}, number = {2}, year = {2019}, note = {In 2019, the Trump Administration proposed amending the Waters of the United States (WOTUS) Act to narrow the definition of wetlands, and to remove millions of acres from protection. In resonse, the American Fisheries Society published this article, an {\textquotedblleft}AFS Special Report{\textquotedblright} on the value of headwaters and wetlands, particularly of streams that are dry part of the year. The Biden Administration subsequently reversed the Trump amendment, but the U.S. Supreme Court, in Sackett vs. the Environmental Protection Agency, ruled in favor of narrowing the definition in 2023. Many aspects of this slow-moving environmental disaster are still in litigation. The article includes a photograph of Crowley Creek on Cascade Head.}, month = {2019, Feb.}, pages = {p.73-91}, keywords = {Calapooia River, Cascade Head National Scenic And Research Area, Coho salmon = Oncorhynchus kisutch, Crowley Creek, depleted populations, ecosystem health, environmental law and policy, general, Oregon chub = Oregonichthys crameri, wetlands, Willamette River}, doi = {https://doi.org/10.1002/fsh.10229 }, url = {https://ir.library.oregonstate.edu/concern/articles/n583z1008 }, author = {Colvin, Susan A. R. and Sullivan, S. and Mazeika P. and Shirey, Patrick D. and Colvin, Randall W. and Winemiller, Kirk O. and Hughes, Robert M. and Fausch, Kurt D. and Infante, Dana M. and Olden, Julian D. and Bestgen, Kevin R. and Danehy, Robert J. and Eby, Lisa} } @article {82531, title = {Insights into estuary habitat loss in the western United States using a new method for mapping maximum extent of tidal wetlands}, journal = {PLoS One}, volume = {14}, number = {8}, year = {2019}, note = {This article recounts the techniques that led to the production of the 2017 maps to model the effects of sea level rise. The authors used lidar digital elevation models and other elevation models to develop new maps of current and historical wetlands on the United States West Coast. Their work shows that about 85\% of historical wetlands have been lost, with most losses near major river deltas. {\textquotedblleft}The new maps will help interested groups improve action plans for estuarine wetland habitat restoration and conservation, and will also provide a better baseline for understanding and predicting future changes with projected sea level rise{\textquotedblright} (from the Abstract).}, month = {2019, Aug. 14}, keywords = {climate, habitats, human impacts, salinity, sea level, wetland vegetation, wetlands, remote sensing, mathematical modeling}, doi = {https://doi.org/10.1371/journal.pone.0218558 }, url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0218558 }, author = {Brophy, Laura S. and Greene, Correigh M. and Hare, Van C. and Holycross, Brett and Lanier, Andy and Heady, Walter N. and O{\textquoteright}Connor, Kevin and Imaki, Hiroo and Haddad, Tanya and Dana, Randy} } @article {80511, title = {Characterizing the adherence profiles of virulent Vibrio parahaemolyticus isolates}, journal = {Microbial Ecology}, volume = {75}, year = {2018}, note = {Vibrio parahaemolyticus is a pathogen associated with shellfish poisoning caused by eating raw or undercooked oysters. Depuration is a standard method for making shellfish safe by placing live animals in clean seawater in order to reduce bacterial contaminants. Unfortunately, it is not very effective at removing this organism. Thus, it is important to understand how V. parahaemolyticus is associated with oysters. This article examines how Vibrios colonize surfaces. Eight different strains were examined to see how they adhered to surfaces, to see if motility could predict persistence in oyster tissues, and to see if examining genetic differences could provide insights. The authors observed {\textquotedblleft}that the motility phenotype of a strain appeared to be a better indicator for persistence in the oyster.{\textquotedblright}}, pages = {p.152-167}, keywords = {bivalves, molluscs, motility, Oregon Oyster Farms, shellfish poisoning, Vibrio = Vibrio parahaemolyticus, Willapa Bay, Yaquina Bay}, doi = {10.1007/s00248-017-1025-8}, author = {Aagesen, Alisha M. and Phuvaste, Sureerat and Su, Yi-Cheng and Hase, Claudia C.} } @article {82016, title = {Ecological and biological studies of ocean rafting: Japanese tsunami marine debris in North America and the Hawaiian Islands}, journal = {Aquatic Invasions}, volume = {13}, year = {2018}, note = {{\textquotedblleft}This is one of the papers from the special issue of Aquatic Invasions on {\textquoteleft}Transoceanic Dispersal of Marine Life from Japan to North America and the Hawaiian Islands as a Result of the Japanese Earthquake and Tsunami of 2011.{\textquoteright}{\textquotedblright} (Co-Editors{\textquoteright} Note). This article is an introduction to the special issue of Aquatic Invasions. It summarizes the largest examples of tsunami debris found on the American Pacific coast and recounts the discovery of many new Japanese species identified as a result of research. Includes color photographs. This is an open-access article.}, month = {2018, Feb.}, pages = {p.1-9}, keywords = {Agate Beach, algae, aquatic invertebrates, coastal hazards, Coos Bay, earthquakes, genetics, geographical distribution, Gleneden Beach, introduced species, morphology, Pacific Coast, Seal Rock, species list, taxonomy, tsunamis}, doi = {https://doi.org/10.3391/ai.2018.13.1.01}, url = {https://tinyurl.com/2pxmp6e8}, author = {Carlton, James T. and Chapman, John W. and Geller, Jonathan B. and Miller, Jessica A. and Ruiz, Gregory M. and Carlton, Deborah A. and McCuller, Megan I. and Treneman, Nancy C. and Steves, Brian P. and Breitenstein, Ralph A. and Lewis, Russell and Bilderback, David and Bilderback, Diane and Haga, Takuma and Harris, Leslie H.} } @article {82161, title = {Environmental controls of oyster-pathogenic Vibrio spp. In Oregon estuaries and a shellfish hatchery}, journal = {Applied and Environmental Microbiology}, volume = {84 }, year = {2018}, note = {Vibrio species present huge problems for oyster hatcheries. They can cause foodborne illnesses, and some species kill shellfish. This article gives the result of a study of the presence of Vibrios in Netarts Bay, Yaquina Bay and the Whiskey Creek Shellfish Hatchery in Netarts Bay. Efforts to reduce Vibrio species at the hatchery are described. These efforts met with success with many species, but not with regard to Vibrio coralliilyticus, a pathogen that kills larval oysters. Conditions in Netarts Bay that may favor this particular species are described. This is an open-access article.}, month = {2018, May}, pages = {e02156-17, 16 p}, keywords = {aquaculture, bacteria, genetics, Hatfield Marine Science Center, molecular biology, Netarts Bay, Vibrio = Vibrio coralliilyticus, Vibrio spp., Whiskey Creek Shellfish Hatchery, Yaquina Bay}, doi = {10.1128/AEM.02156-17}, url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5930336/ }, author = {Gradoville, Mary R. and Crump, Byron C. and Hase, Claudia C. and White, Angelicque E.} } @article {82881, title = {Everywhere you look, everywhere you go, there{\textquoteright}s an estuary invaded by the red seaweed Gracilaria vermiculophylla (Ohmi) Papenfuss, 1967}, journal = {BioInvasions Records }, volume = {7}, number = {4}, year = {2018}, note = {The red algae Graciliara vermiculophylla is a native of the northwestern Pacific region. Over the course of the last century, it has successfully invaded almost every temperate estuary on the other side of the ocean, in North America. This aggressive invader changes habitats, particularly by populating habitats that were formerly lacking algal cover. In this paper, the authors report on a survey of 61 sites, from Alaska to San Diego, and recorded 33 new sites where the species was found. {\textquotedblleft}Our study fills in the significant gaps in the distribution of G. vermiculophylla in North America, and, as such, will be an important contribution to future studies on the ecological and evolutionary consequences of this widespread marine invasion along this coastline.{\textquotedblright} (from the Abstract)}, month = {2018, Nov.}, pages = {p.343-355}, keywords = {Gracilaria vermiculophylla, Tillamook Bay, Netarts Bay, Yaquina Bay, Alsea Bay, Algae, Genetics, Geographic distribution, Introduced species, Life history information}, doi = {https://doi.org/10.3391/bir.2018.7.4.01 }, url = {https://www.reabic.net/journals/bir/2018/4/BIR_2018_KruegerHadfield_etal.pdf }, author = {Krueger-Hadfield, Stacy A. and Stephens, Tiffany A. and Ryan, Will H. and Heiser, Sabrina} } @article {82026, title = {Impact of multiple stressors on juvenile fish in estuaries of the northeast Pacific}, journal = {Global Change Biology}, volume = {24}, year = {2018}, note = {{\textquotedblleft}Here we provide one of the first studies for coastal ecosystems examining multiple stressor effects across broad scales, focused on the nursery function of 20 estuaries spanning 1,600 miles of coastline, 25 years of monitoring, and seven fish and invertebrate species along the northeast Pacific coast.{\textquotedblright} (from the Abstract) Chinook salmon were find to be most susceptible to pollution, and English sole was most vulnerable to the loss of land cover. Some of the authors were Federal employees, making access of this article through ResearchGate permissible.}, month = {2018, May }, pages = {p.2008-2020}, keywords = {Salmon River, Siletz Bay, Yaquina Bay, Alsea Bay, Siuslaw River estuary, Chinook salmon = Oncorhynchus tshawytscha, English sole = Parophrys vetulus, abundance, human impacts, ecosystem health, environmental stress, pollution, water quality,}, doi = {https://doi.org/10.1111/gcb.14055 }, author = {Toft, Jason D. and Munsch, Stuart H. and Cordell, Jeffery R. and Siitari, Kiira and Hare, Van C. and Holycross, Brett M. and DeBruyckere, Lisa A. and Greene, Correigh M. and Hughes, Brent B.} } @article {82396, title = {Tsunami-resilient building design considerations for coastal communities of Washington, Oregon, and California}, journal = {Journal of Structural Engineering}, volume = {144}, number = {8}, year = {2018}, note = {The American Society for Civil Engineering has issued a new standard on "Tsunami Loads and Effects" as part of the 2016 edition of the ASCE Standard, Minimum Design Loads and Associated Criteria for Buildings and Other Structures. This is a technical article examining the pressures and hydrodynamic lateral forces of tsunami and discusses options for planners such as strengthening buldings or changing zoning. "It is important that communities in tsunami hazard areas evaluate their risk associated with existing development and start to consider disaster resilience in community planning of future development" (p.04018116-11).}, pages = {p.04018116-1-12}, keywords = {coastal hazards, earthquakes, tsunamis, engineering, environmental law and policy, Bay City (Or.), Newport (Or.), Waldport (Or.), Yachats (Or.), North Bend (Or.)}, doi = {https://doi.org/10.1061/(ASCE)ST.1943-541X.0002068}, author = {Chock, Gary Y. K. and Carden, Lyle and Robertson, Ian and Wei, Yong and Wilson, Rick and Hooper, John} } @article {80476, title = {Benthic Marine Algae on Japanese Tsunami Marine Debris {\textendash} a Morphological Documentation of the Species. Part 3. The Green Algae and Cyanobacteria.}, volume = {no.17-003}, year = {2017}, note = {On March 11, 2011, the great Tohoku earthquake shook Japan. The subsequent tsunami swept approximately 5 million tons of debris into the Pacific Ocean, some of which made its way across the Pacific and washed up on the North American West Coast. The debris carried hundreds of species, a surprising number of which survived the trip. In order to understand the potential for biological invasions, it was necessary to document these species. This report describes sampling and genetic sequencing of marine algae found on 42 items that washed up between June, 2012 and July, 2016. It is in three parts. Part 1 gives an overview of the project and describes the red algae, Part 2 covers the brown algae and Part 3 gives the green algae and cyanobacteria. Beautifully illustrated with photographs, microphotographs and drawings.}, pages = {43 p.}, institution = {Oregon State University Libraries. The Scholars Archive,}, address = {Corvallis, Or.}, keywords = {Tillamook Spit, Agate Beach, Nye Beach, Seal Rock, Waldport (Or.), Yachats (Or.), Umpqua River Estuary, Coos Bay, Sixes River Estuary, coastal hazards, earthquakes, tsunamis, introduced species, algae, taxonomy, morphology, genetics, species list}, doi = {http://dx.doi.org/10.5399/osu/1112 }, url = {https://ir.library.oregonstate.edu/concern/defaults/db78th95q}, author = {Hansen, Gayle I. and Hanyuda, Takeaki and Kawai, Hiroshi} } @article {80466, title = {Benthic Marine Algae on Japanese Tsunami Marine Debris {\textendash} a Morphological Documentation of the Species. Part 1 {\textendash} The Tsunami Event, the Project Overview, and the Red Algae}, volume = {no.17-001}, year = {2017}, note = {On March 11, 2011, the great Tohoku earthquake shook Japan. The subsequent tsunami swept approximately 5 million tons of debris into the Pacific Ocean, some of which made its way across the Pacific and washed up on the North American West Coast. The debris carried hundreds of species, a surprising number of which survived the trip. In order to understand the potential for biological invasions, it was necessary to document these species. This report describes sampling and genetic sequencing of marine algae found on 42 items that washed up between June, 2012 and July, 2016. It is in three parts. Part 1 gives an overview of the project and describes the red algae, Part 2 covers the brown algae and Part 3 gives the green algae and cyanobacteria. Beautifully illustrated with photographs, microphotographs and drawings.}, pages = {50 p.}, institution = {Oregon State University Libraries. The Scholars Archive,}, address = {Corvallis, Or.}, keywords = {Tillamook Spit, Agate Beach, Nye Beach, Seal Rock, Waldport (Or.), Yachats (Or.), Umpqua River Estuary, Coos Bay, Sixes River Estuary, coastal hazards, earthquakes, tsunamis, introduced species, algae, taxonomy, morphology, genetics, species list}, doi = {http://dx.doi.org/10.5399/osu/1110 }, url = {https://ir.library.oregonstate.edu/concern/defaults/cr56n576w}, author = {Hansen, Gayle I. and Hanyuda, Takeaki and Kawai, Hiroshi} } @article {80471, title = {Benthic Marine Algae on Japanese Tsunami Marine Debris {\textendash} a Morphological Documentation of the Species. Part 2 {\textendash} The Brown Algae}, volume = {no.17-002}, year = {2017}, note = {On March 11, 2011, the great Tohoku earthquake shook Japan. The subsequent tsunami swept approximately 5 million tons of debris into the Pacific Ocean, some of which made its way across the Pacific and washed up on the North American West Coast. The debris carried hundreds of species, a surprising number of which survived the trip. In order to understand the potential for biological invasions, it was necessary to document these species. This report describes sampling and genetic sequencing of marine algae found on 42 items that washed up between June, 2012 and July, 2016. It is in three parts. Part 1 gives an overview of the project and describes the red algae, Part 2 covers the brown algae and Part 3 gives the green algae and cyanobacteria. Beautifully illustrated with photographs, microphotographs and drawings.}, pages = {61 p.}, institution = {Oregon State University Libraries. The Scholars Archive,}, address = {Corvallis, Or.}, keywords = {Tillamook Spit, Agate Beach, Nye Beach, Seal Rock, Waldport (Or.), Yachats (Or.), Umpqua River Estuary, Coos Bay, Sixes River Estuary, coastal hazards, earthquakes, tsunamis, introduced species, algae, taxonomy, morphology, genetics, species list}, doi = {http://dx.doi.org/10.5399/osu/1111 }, url = {https://ir.library.oregonstate.edu/concern/articles/8049g9979}, author = {Hansen, Gayle I. and Hanyuda, Takeaki and Kawai, Hiroshi} } @article {82391, title = {Coordinated Population Forecast for Lincoln County, its Urban Growth Boundaries (UGB), and Area Outside UGBs 2017-2067}, volume = {no.29}, year = {2017}, note = {In-migration from areas outside Lincoln County, and mortality of an aging population are the major drivers of population levels in the area. {\textquotedblleft}Lincoln County{\textquoteright}s total population is forecast to grow by 12,684 persons (27 percent) from 2017 to 2067, which translates into a total countywide population of 60,628 in 2067 (Figure 15). The population is forecast to grow at the highest rate {\textemdash} 0.7 percent per year {\textemdash} in the near-term (2017-2025). This anticipated population growth in the near-term is based on three core assumptions: (1) Lincoln County{\textquoteright}s economy will continue to strengthen in the next 10 years; (2) middle-aged persons will continue to migrate into the county; (3) empty nesters and retirees will continue to migrate into the county, thus increasing deaths{\textquotedblright} (p.19)}, month = {2017, Jun. 30}, pages = {42 p.}, institution = {Portland State University. Population Research Center}, address = {Portland, Or.}, keywords = {Lincoln County, Depoe Bay (Or.), Lincoln City (Or.), Newport (Or.), Siletz (Or.), Toledo (Or.), Waldport (Or.), Yachats (Or.), demographics, population count, mathematical modeling}, url = {https://pdxscholar.library.pdx.edu/cgi/viewcontent.cgi?article=1029\&context=opfp }, author = {Jurjevich, Jason R. and Chun, Nicholas and Rancik, Kevin and Proehl, Risa and Michel, Julia; and Harada, Matt and Rynerson, Charles and Morris, Randy} } @article {80351, title = {Demographic and genetic connectivity: the role and consequences of reproduction, dispersal and recruitment in seagrasses}, journal = {Biological Reviews}, volume = {92}, year = {2017}, note = {The valuable ecological roles provided by seagrasses are well known. Population connectivity in seagrasses, however, is less well understood. {\textquotedblleft}Accurate estimation of connectivity among populations is fundamental for determining the drivers of population resilience, genetic diversity, adaptation and speciation{\textquotedblright} (from the Abstract). This article provides a review about what is known about this aspect of seagrass ecology around the world, and includes a study of eelgrass in Yaquina Bay. The authors point out what is known, gaps in knowledge, and potential directions for future research. }, pages = {p.921-938}, keywords = {aquatic vegetation, eelgrass = Zostera marina, genetics, recruitment, reproductive biology, Yaquina Bay}, doi = {doi: 10.1111/brv.12261 }, author = {Kendrick, Gary A. and Orth, Robert J. and Statton, John and Hovey, Renae and Ruiz Montoya, Leonardo and Lowe, Ryan J. and Krauss, Siegfried L. and Sinclair, Elizabeth A.} } @article {80556, title = {Human Dimensions of Climate Change in Coastal Oregon}, volume = {no. 2017-052 }, year = {2017}, note = {An attractive climate relative to the rest of the state and nation draws more people to the Oregon Coast. Longer, drier summers bring more tourists, more forest fires and less available freshwater. Heavier winter rains bring more flooding and erosion events. Higher water temperatures cause the ranges of animals (terrestrial and aquatic) to change, increase toxic algae blooms, kill salmon and stress Dungeness crabs. Increasing ocean acidity stresses shellfish. More intense winter storms and higher sea levels threaten infrastructure. These are some of the consequences of climate change outlined in this excellent report. One of the more valuable aspects of this comprehensive look at climate change in our area is extensive quotations from local residents. Good information on the Coos Bay and Newport areas. This report is highly recommended. }, pages = {216 p.}, institution = {U. S. Dept. of the Interior. Bureau of Ocean Energy Management, }, address = {Washington, D. C.}, keywords = {climate, coastal hazards, commercial fisheries, Coos Bay, demographics, ecosystem modeling, general, general ecosystem health, human impacts, ocean acidification, precipitation, sea levels, water temperature, Yaquina Bay}, url = {https://espis.boem.gov/final\%20reports/5630.pdf}, author = {Hoelting, Kristin and Burkardt, Nina} } @article {82386, title = {Oregon Climate Assessment Report {\textendash} 2017}, year = {2017}, note = {An eye-opening look at what{\textquoteright}s ahead.}, month = {2017, Jan.}, pages = {99 p.}, institution = {Oregon Climate Change Research Institute}, address = {Corvallis, Or.}, keywords = {agriculture, climate, climate change, coastal hazards, demographics, depleted populations, economics, fish, human impact, invasive species, phenology, precipitation, temperature, terrestrial vegetation, water temperature, wildlife}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A637579}, author = {Dalton, Meghan M. and Dello, Kathie D. and Hawkins, Linnia and Mote, Philip W. and Rupp, David E. and Oregon State University. College of Earth, Ocean and Atmospheric Sciences. Oregon Climate Change Research Institute,} } @book {80381, title = {Oregon Estuarine Invertebrates: Rudy{\textquoteright}s Illustrated Guide to Common Species}, volume = {1-3}, year = {2017}, note = {"Original edition by Paul and Lynn Rudy." Volume 1. Cnidaria, Nemertea, Annelida, Sipuncula -- , Volume 2. Arthropoda -- , Volume 3. Mollusca, Phoronida, Echinodermata, Chordata, appendices. Advances in genetics have revolutionized the classification of aquatic invertebrates. Many animals have been given new names that more accurately reflect their relationships with other species. For this reason, it was necessary to create a new edition of Paul and Lynn Rudy{\textquoteright}s classic {\textquotedblleft}Oregon Estuarine Invertebrates.{\textquotedblright} This third edition is a vast, although not quite complete, three-volume expansion of the original work. Rudy{\textquoteright}s original line drawings have been retained. There is a new section on taxonomy, and most descriptive sections have been expanded. The bibliography section has been brought up-to-date with contemporary references. The invaluable {\textquotedblleft}Possible Misidentifications{\textquotedblright} section has been expanded. A few species not yet updated will follow. This magnum opus is available on the internet and should be referenced by anyone wanting to identify and learn more about these familiar, fascinating animals.}, publisher = {University of Oregon Libraries, Oregon Institute of Marine Biology}, organization = {University of Oregon Libraries, Oregon Institute of Marine Biology}, edition = {3rd ed.}, chapter = {865 p.}, address = {[Charleston, Oregon] }, keywords = {annelids, aquatic invertebrates, aquatic worms, arthropods, bibliography, brachiopods, cnidarians, echinoderms, general, identification, molluscs, segmented worms, taxonomy, tunicates}, url = {https://scholarsbank.uoregon.edu/xmlui/handle/1794/18839 }, author = {Hiebert, Terra C. and Butler, Barbara and Shanks, Alan L. and Rudy, Paul} } @article {80451, title = {Trends in the Pacific herring (Clupea pallasii) metapopulation in the California Current Ecosystem}, journal = {California Cooperative Oceanic Fisheries Investigations, Progress Report}, volume = {58}, year = {2017}, note = {This paper examines population trends for Pacific herring on the West Coast. The authors find that overall populations have been declining since the 1980s, although there are areas such as Yaquina Bay that have not seen large declines. The data hints at cyclic fluctuations in population, but more study is needed. {\textquotedblleft}We do not understand the drivers of changes occurring in the herring metapopulation, nor have the consequences to upper trophic levels in this marine ecosystem been investigated comprehensively. Expansion of current monitoring and new directed research on relationships between herring and the environment and higher level consumers is therefore warranted and essential.{\textquotedblright} (p.11)}, pages = {p.1-18}, keywords = {abundance, climate, depleted populations, geographic distribution, Pacific Decadal Oscillation, Pacific herring = Clupea pallasii, population biology, statistical analysis, Yaquina Bay}, url = {https://calcofi.com/publications/calcofireports/v58/Vol58-Thompson_pages_77-94.pdf}, author = {Thompson, Sarah Ann and Sydeman, William J. and Thayer, Julie A. and Weinstein, Anna and Krieger, Katherine L. and Hay, Doug} } @article {83166, title = {Were they all giants? Perspectives on late Holocene plate-boundary earthquakes at the northern end of the Cascadia subduction zone}, journal = {Quaternary Science Reviews}, volume = {169}, year = {2017}, note = {While this article is focused on the northern end of the Cascadia Subduction Zone, it offers an up-to-date look at research on prehistoric tsunamis on the West Coast. The authors attempt to match buried soils in southwest Washington that show seven different tsunamis with evidence on Vancouver Island. They also note what can be correlated with earthquake evidence from the entire subduction zone. The authors found that three earthquakes were definitely caused by a rupture of the entire plate margin. Three other earthquakes left tsunami evidence in the north, but the deposited soils have not yet been accurately dated. One earthquake seems to have taken place in the north, but is not well correlated in the south, indicating a possible partial plate rupture.}, pages = {p.29-49}, keywords = {coastal hazards, Coos Bay, earthquakes, Ecola Creek, geology, Lagoon Creek, Nestucca Bay, Netarts Bay, paleosciences, Talbot Creek (Coos Bay), tsunamis, turbedites, Vancouver Island, Washington (State), Yaquina Bay}, doi = {http://dx.doi.org/10.1016/j.quascirev.2017.05.015}, author = {Hutchinson, Ian and Clague, John J.} } @article {77271, title = {Characterization of ecosystem structure within transplanted and natural eelgrass (Zostera marina) beds}, journal = {Northwest Science}, volume = {90}, year = {2016}, note = {The native seagrass Zostera marina plays a vital role in Oregon estuaries, producing oxygen and providing valuable habitat for many species. In 2010, NOAA moved its Marine Operations Center {\textendash} Pacific to Newport, Oregon. It was necessary to dredge the bay to put in new docks for NOAA research vessels, and in the process a .68 acre eelgrass bed was destroyed. In order to mitigate this damage, the original eelgrass was replanted in a new site. In this paper, the authors report on the results of the transplantation, noting ecological diversity, sediment characteristic and species abundance throughout the year.}, pages = {p.355-375}, keywords = {ecosystem health, eelgrass = Zostera marina, geographical distribution, habitat restoration, habitats, Hatfield Marine Science Center, Port of Newport, sediments, species composition, species list, temporal distribution, tides, Yaquina Bay}, doi = {doi: http://dx.doi.org/10.3955/046.090.0314}, author = {Lewis, Nathaniel S. and Henkel, Sarah K.} } @article {77296, title = {Genomic and phylogenetic analysis of Ceramium cimbricum (Ceramiales, Rhodophyta) from the Atlantic and Pacific Oceans supports the naming of a new invasive Pacific entity Ceramium sungminbooi sp. Nov.}, journal = {Botanica Marina}, volume = {59A}, year = {2016}, note = {The flow of introduced species across the Pacific Ocean is from East to West. That is, most introduced species on the U.S. West Coast come from Asia. This is true in the case of Ceramium sungminbooi, a red alga from Korea. This article describes the distinction between the Asian type of Ceramium as opposed to the European species, Ceramium cimbricum and calls for the Asian species now on the American West Coast to be recognized as a new species. {\textquotedblleft}It is unknown whether C. sungminbooi was introduced to Oregon as a result of oyster mariculture or if it was hull-borne.{\textquotedblright} (p.219) Free access to an ahead-of-print version of this article is available.}, month = {2016}, pages = {p.211-222}, keywords = {aquatic vegetation, Coos Bay, genetics, Hatfield Marine Science Center, introduced species, new species description, red algae, taxonomy, Yaquina Bay}, doi = {doi 10.1515/bot-2016-0036}, author = {Hughey, Jeffery R. and Boo, Ga Hun} } @article {80306, title = {Hatfield Marine Science Center Dynamic Revetment Project DSL permit $\#$ 45455-FP: Final Monitoring Report February, 2016}, year = {2016}, note = {This is the fifth and final document in a series of five annual reports concerning control of severe erosion along Yaquina Bay next to the Hatfield Marine Science Center. Parts of the shoreline were stabilized in 2007 and 2011. Severe erosion in the unmodified Reference area led to extension of the dynamic revetment into the Reference area in 2015. The 2015 work {\textquotedblleft}has largely stabilized shoreline erosion within the project area{\textquotedblright} (p.32). Concerns remain about the need for more gravel and high-water events, including king tides. Aerial photograph, color photographs.}, pages = {51 p.}, institution = {Oregon State University. Hatfield Marine Science Center,}, address = {Newport, Or.}, keywords = {amphipods, aquatic invertebrates, beaches, benthos, coastal hazards, erosion, fish, Hatfield Marine Science Center, Pacific staghorn sculpin = Leptocottus armatus, physical, Shiner perch = Cymatogaster aggregate, species list, terrestrial vegetation, wave height data, Whitebait smelt = Allosmerus elongates, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/pn89d710t}, author = {Cowen, Robert and Nelson, Walt and Arbuckle, Scarlett and Folger, Christina and Allan, Jonathan and Heppell Laboratory,} } @article {77411, title = {Influences of natural and anthropogenic factors and tidal restoration on terrestrial arthropod assemblages in West Coast North American estuarine wetlands}, journal = {Estuaries and Coasts}, volume = {39}, year = {2016}, note = {This article reviews studies on arthropod assemblages from 87 wetland sites in 13 West Coast estuaries. What are the distribution and abundance of these animals? How does human-caused change to the environment affect them? It turns out that restoring wetlands, such as those in the Salmon River Estuary, causes arthropod abundance to increase rapidly. {\textquotedblleft}These results suggest that restoration of tidal influence to leveed wetlands can rapidly restore some components of estuarine wetland ecosystems but that recovery of other components will take longer and may depend on the extent of anthropogenic modification of the surrounding landscape.{\textquotedblright} (from the Abstract)}, pages = {p.1491-1504}, keywords = {Columbia River, Nestucca River, Salmon River, Yaquina River, Alsea River, Siuslaw River, Coquille River, salt marsh, insects, wetland restoration, population biology, human impacts, land use}, doi = {doi: 10.1007/s12237-016-0091-3}, author = {David, Aaron T. and Goertier, Pascale A. L. and Munsch, Stuart H. and Jones, Brittany R. and Simenstad, Charles A. and Taft, Jason D. and Cordell, Jeffrey R. and Howe, Emily R. and Gray, Ayesha and Hannam, Michael P. and Matsubu, William and Morgan, Erin E.} } @article {77321, title = {Slow shell building, a possible trait for resistance to the effects of acute ocean acidification}, journal = {Limnology and Oceanography}, volume = {61}, year = {2016}, note = {Anthropogenic increases in carbon dioxide in the atmosphere have led to acidification of the oceans. More acidic ocean water profoundly affects development of shellfish, and has had a huge impact on shellfish growers in the Pacific Northwest. The Pacific oyster, which originates in Japan, and has historically been the most commonly grown species, seems to be particularly sensitive to ocean acidification. The native Olympia oyster has a different life history and a slower rate of development than the Pacific oyster. In this paper, the authors explore the process of slow shell-building in Olympia oysters in acidic waters and consider implications for potential resiliency in adverse environmental conditions in this and other shellfish species. }, month = {2016}, pages = {p.1969-1983}, keywords = {Yaquina Bay, Hatfield Marine Science Center, Oregon Oyster Farms, Netarts Bay, Whiskey Creek, Pacific oyster = Crassostrea gigas, Olympia oyster=Ostrea lurida (Ostrea conchaphila), aquaculture, molluscs, bivalves, oysters, ocean acidification, human imp}, doi = {doi: 10.1002/lno.10348}, author = {Waldbusser, George G. and Gray, Matthew W. and Hales, Burke and Langdon, Christopher J. and Haley, Brian A. and Gimenez, Iria and Smith, Stephanie R. and Brunner, Elizabeth L. and Hutchinson, Greg} } @article {77211, title = {Buried alive: an invasive seagrass (Zostera japonica) changes its reproductive allocation in response to sediment disturbance}, journal = {Marine Ecology Progress Series}, volume = {532}, year = {2015}, note = {This paper examines how Japanese eelgrass responds to disturbances in its environment that result in increased sedimentation. The more sediment disturbance, the more likely the plants were to reproduce sexually, and produce seeds. {\textquotedblleft}If disturbance increases sexual reproduction, it may facilitate the invasion by increasing propagule pressure and genetic diversity. This could create an increased likelihood that Z. japonica reaches new sites, and, as has been shown in other invasive grasses, could allow this species to successfully proliferate across a wider range of environmental conditions{\textellipsis}{\textquotedblright} (p.135) Full-text of this article is available from the authors via ResearchGate.}, pages = {p.123-136}, keywords = {fecundity, germination. Introduced species, ghost shrimp = Neotrypaea californiensis, human impacts, Japanese eelgrass = Zostera japonica, King Slough, Oregon Oyster Farms, reproduction, Sally{\textquoteright}s Bend, sediments, Yaquina Bay}, doi = {doi:10.3354/meps11335}, url = {https://www.int-res.com/abstracts/meps/v532/p123-136/}, author = {Henderson, Jeremy and Hacker, Sally D.} } @article {76696, title = {Environmental drivers and reproductive consequences of variation in the diet of a marine predator}, journal = {Journal of Marine Systems }, volume = {146 }, year = {2015}, note = {{\textquotedblleft}Ocean conditions can greatly impact lower trophic level prey assemblages in marine ecosystems, with effects of ocean state propagating to higher trophic levels. In many regions throughout their range, common murre (Uria aalge) exhibit narrow dietary breadth in feeding chicks and therefore are vulnerable to recruitment failures of dominant prey species during the breeding season. Contrastingly, common murres nesting in the northern California Current off Oregon, exhibit high species diversity and variability in dominant prey consumed. We studied the diets of common murres over 10 years between 1998 and 2011, a period in which the northern California Current experienced dramatic interannual variability in ocean conditions. Likewise, murre diets off Oregon varied considerably. Interannual variation in murre chick diets was influenced by environmental drivers occurring before and during the breeding season, and at both basin and local scales.{\textquotedblright} (from the Abstract)}, month = {2015}, pages = {p.72{\textendash}81}, keywords = {climate, common murre = Uria aalge, diet, El Nino, fecundity, La Nina, nutrition, Pacific Decadal Oscillation, Pacific herring = Clupea pallasii, Pacific sand lance = Ammodytes hexapterus, predation, Surf smelt = Hypomesus pretiosis, Whitebait smelt = Allosmerus elongates, Yaquina Head}, doi = {10.1016/j.jmarsys.2014.06.015}, author = {Gladics, Amanda J. and Suryan, Robert M. and Parrish, Julia K. and Horton, Cheryl A. and Daly, Elizabeth A. and Peterson, William T.} } @article {77021, title = {Feasibility Assessment for the Reintroduction of Fishers in Western Oregon, USA}, year = {2015}, note = {This report examines the history of native fisher populations in Oregon and conditions necessary to reintroduce them to western Oregon. Currently, there are two resident populations, one in the Kalmiopsis, and another reintroduced population in the southern Oregon Cascades. This report indicates that there is habitat in the northern Coast Range and in the northern Cascades that could provide good sites for reintroduction.}, month = {2015, Mar.}, pages = {86 p.}, institution = {U.S. Fish and Wildlife Service}, address = {Portland, Or.}, keywords = {Alsea River Basin, depleted populations, ecosystem health, endangered species, life history information, Pacific fisher = Martes pennant pacifica, Siletz River Basin, Siuslaw National Forest, Umpqua National Forest, Umpqua River Basin, Yaquina River Basin}, url = {https://tinyurl.com/ynsts4vw }, author = {Hiller, Tim L.} } @article {80301, title = {Hatfield Marine Science Center Dynamic Revetment Project DSL permit $\#$ 45455-FP: Monitoring Report, February 2015}, year = {2015}, note = {This is the fourth in a series of five annual reports concerning control of erosion along Yaquina Bay next to the Hatfield Marine Science Center. Parts of the shoreline were stabilized in 2007 and 2011. Before more dynamic revetments will be permitted, a five-year study of nearby unmodified shorelines is required. {\textquotedblleft}Monitoring of beach profiles indicated that as of January 2015, the 2011 Dynamic Revetment Project (DRP) has generally successfully stabilized the shoreline in the project area. Beach profile data also indicated that the 2007 DRP continued to be successful in stabilizing further retreat of the shoreline. . . Rapid erosion has continued in the adjacent Reference beach area and over the period 2009-2015 has been as great as 11 m (36 ft).{\textquotedblright}(p.2) Aerial photograph, color photographs.}, pages = {43 p.}, institution = {Oregon State University. Hatfield Marine Science Center,}, address = {Newport, Or.}, keywords = {amphipods, aquatic invertebrates, beaches, benthos, chum salmon = Oncorhynchus keta, coastal hazards, erosion, fish, Hatfield Marine Science Center, Pacific staghorn sculpin = Leptocottus armatus, physical, Shiner perch = Cymatogaster aggregate, species list, terrestrial vegetation, wave height data, Whitebait smelt = Allosmerus elongates, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/1z40kt28z}, author = {Cowen, Robert and Nelson, Walt and Arbuckle, Scarlett and Folger, Christina and Allan, Jonathan and Heppell Laboratory,} } @article {76911, title = {A sea-level database for the Pacific coast of central North America}, journal = {Quaternary Science Reviews}, volume = {113}, year = {2015}, note = {When the glaciers melted at the end of the last ice age, sea levels along the Pacific Coast of North America did not rise uniformly. Areas where the earth had been pressed down by the weight of glaciers saw relatively little sea level rise, as the land rebounded when the weight was removed. Sites further away from the great glaciers saw higher sea levels. In this paper, the authors describe a database of sea levels and reference points for the last 16,000 years in our area. Appendices give reference points, descriptions, and referenced publications. Interestingly, Alsea Bay in Appendix 1 is spelled {\textquotedblleft}Alsey Bay.{\textquotedblright}}, month = {2015, Apr. 1}, pages = {p.78-92}, keywords = {Alsea Bay, Coos Bay, Coquille River, geology, Glaciation, Nehalem River, Nestucca Bay, Netarts Bay, paleosciences, Salmon River, sea level, Siletz Bay, Siuslaw River estuary, Yaquina Bay}, doi = {10.1016/j.quascirev.2014.12.001}, author = {Engelhart, Simon E. and Vacchi, Matteo and Horton, Benjamin P. and Nelson, Alan R. and Kopp, Robert E.} } @article {76891, title = {Stratigraphic and microfossil evidence for a 4500-year history of Cascadia subduction zone earthquakes and tsunamis at Yaquina River estuary, Oregon, USA}, journal = {Geological Society of America Bulletin, }, volume = {127}, number = {1-2}, year = {2015}, note = {There{\textquoteright}s a freshwater spruce swamp buried near the northeastern shore of Sally{\textquoteright}s Bend in Yaquina Bay. Sediment cores show 8-10 different soil sequences buried there, going back about 4500 years before the present. Each sequence terminates abruptly with a sandy deposit and then over 10 centimeters of mud. The authors of this paper infer that {\textquotedblleft}each buried soil represents a Cascadia subduction zone earthquake{\textellipsis}{\textquotedblright} (from the Abstract) The article includes maps of the bay, and show locations of previous research by other scientists. The Yaquina Bay sequence is compared with sequences from other Oregon estuaries.}, pages = {p.211-226}, keywords = {Alsea Bay, Cannon Beach, coastal hazards, Coos Bay, Coquille River, earthquakes, geology, Netarts Bay, paleosciences, Sally{\textquoteright}s Bend, Salmon River, sediments, Sixes River, South Slough, tsunamis, Yaquina Bay, Yaquina River Estuary}, doi = {10.1130/B31074.1}, author = {Graehl, Nicholas A. and Kelsey, Harvey M. and Witter, Robert C. and Hemphill-Haley, Eileen and Engelhart, Simon E.} } @article {76336, title = {Hatfield Marine Science Center Dynamic Revetment Report DSL Permit $\#$45455-FP Monitoring Report February, 2014 Report}, year = {2014}, note = {This is the third in a series of five annual reports concerning control of erosion along Yaquina Bay next to the Hatfield Marine Science Center. Parts of the shoreline were stabilized in 2007 and 2011. Before more dynamic revetments will be permitted, a five-year study of nearby unmodified shorelines is required. {\textquotedblleft}Monitoring of beach profiles indicated that as of December 2013, the 2011 Dynamic Revetment Project (DRP) has successfully stabilized the shoreline in the project area, while rapid erosion has continued in the adjacent Reference beach area. Erosion in the unprotected Reference area in the period 2009-2013 has been as great as 9.6 m (31.5 ft).{\textquotedblright} (from the Abstract) Aerial photograph, color photographs.}, pages = {37 p.}, institution = {Oregon State University. Hatfield Marine Science Center}, address = {Newport, Or.}, keywords = {amphipods, aquatic invertebrates, beaches, benthos, coastal hazards, Dungeness crab = Metacarcinus magister, erosion, fish, Hatfield Marine Science Center, Pacific staghorn sculpin = Leptocottus armatus, physical, Shiner perch = Cymatogaster aggregate, species list, terrestrial vegetation, wave height data, Whitebait smelt = Allosmerus elongates, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/cf95jb894}, author = {Cowan, Robert and Nelson, Walt and Allan, Jonathan and Arbuckle, Scarlett and Heppell Laboratory, and Folger, Christina L.} } @article {80231, title = {An Inventory and Classification of U.S. West Coast Estuaries}, year = {2014}, note = {{\textquotedblleft}To support restoration, enhancement and conservation of the ecosystem values of U.S. West Coast estuaries, we need first to inventory and classify those estuarine systems using a common scheme. Previous efforts have noted this need and responded with inventories, assessments and classifications of estuaries along the West Coast, but generally only for a subset, and often focused on larger estuaries.{\textquotedblright} This document provides classification data for 691 estuaries in Washington, Oregon and California.}, pages = {81 p.}, institution = {The Nature Conservancy}, address = {Arlington, Va. }, keywords = {Alsea Bay, Chetco River estuary, Columbia River estuary, Coos Bay, Coquille River estuary, Devil{\textquoteright}s Lake, Depoe Bay, Little Creek, Beaver Creek, Rock Creek, Big Creek, Yachats River, Tenmile Creek, Siltcoos River, Tahkenitch Creek, Necanicum River estuar}, url = {https://www.scienceforconservation.org/assets/downloads/West-Coast-Estuary-Inventory-2014.pdf}, author = {Heady, Walter N. and O{\textquoteright}Connor, Kevin and Kassakian, Jennifer and Doiron, Kate and Endris, Charles and Hudgens, Daniel and Clark, Ross P. and Carter, Jena and Gleason, Mary G.} } @article {76436, title = {Nursery Functions of U.S. West Coast Estuaries: The State of Knowledge for Juveniles of Focal Invertebrate and Fish Species}, year = {2014}, note = {This report summarizes what is known about the role of estuaries as nurseries for important aquatic species. The authors inventoried 303 West Coast estuaries and categorized each by class (lagoonal, riverine, embayment and sound) and subclass (estuarine coastal subtidal, tidal channel/creek, slough and lagoon). They examined 15 different species that used estuaries and noted what is known and not known about their life cycles and use of estuaries. {\textquotedblleft}Together with the estuary inventory and the geodatabase, this report represents the first stage in a larger effort to better understand the nursery functions of West Coast estuaries for fish and invertebrates.{\textquotedblright} (p.3)}, pages = {168 p.}, institution = {The Nature Conservancy}, address = {Arlington, Va.}, keywords = {aquatic invertebrates, Bat stingray = Myliobatus californicus (Aetobatus californicus), Bay shrimp = Crangon franciscorum, Brown rockfish = Sebastes auriculatus, California halibut = Paralichthys californicus, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, crustaceans, Dungeness crab = Metacarcinus magister (Cancer magister), eelgrass = Zostera marina, English sole = Parophrys vetulus, estuaries, fishes, general, geographic distribution, Green sturgeon = Acipenser medirostris, habitats, juvenile fish, Leopard shark = Triakis semifasciata, life history information, Oregon, Pacific Coast, Pacific herring = Clupea pallasi, Pacific staghorn sculpin = Leptocottus armatus, Shiner perch = Cymatogaster aggregate, Starry flounder = Platichthys stellatus, steelhead trout = Oncorhynchus mykiss}, url = {https://www.scienceforconservation.org/products/nursery-functions-of-estuaries}, author = {Hughes, Brent B. and Levey, Matthew D. and Brown, Jennifer A. and Fountain, Monique C. and Carlisle, Aaron B. and Litvin, Steven Y. and Greene, Correigh M. and Heady, Walter N. and Gleason, Mary G.} } @article {51396, title = {2012 Ocean Bioaccumulation Survey: Final Report}, year = {2013}, note = {{\textquotedblleft}Prepared for the City of Newport, Oregon.{\textquotedblright} {\textquotedblleft}Oregon State University collected and analyzed coastal marine species for concentrations of heavy metals and organic pollutants August to October 2012. . . . Animals were collected from stations around the Georgia Pacific (G--P) outfall pipe adjacent to Nye Beach, OR (mixing zone stations) as well as stations north of Yaquina Head and south of Yaquina Bay. . . . Organisms were processed for trace metals, PCBs \& congeners, phenolics, and PBDEs. There was little evidence for bioaccumulation of contaminants of concern associated with the G--P outfall pipe.{\textquotedblright} (from the Executive Summary)}, month = {2013, Aug. 27}, pages = {77 p.}, keywords = {arsenic, cadmium, chromium, copper, cyanide, Georgia-Pacific Corporation, heavy metals, mercury, Moolack Beach, Newport (Or.), nickel, Nye Beach, polychlorinated biphenyls, silver, South Beach, vanadium, water pollution, water quality, Yaquina Head, zinc}, url = {https://newportoregon.gov/citygov/comm/tatf/supp/CityofNewportFinalBioaccumulationReport080713.pdf}, author = {Henkel, Sarah and Heppell, Scott and Heppell, Selina and Politano, Kristin and Politano, Vincent and Oregon State University} } @article {80571, title = {Comparing Metacarcinus magister Settlement Preferences among the Seagrasses Zostera marina and Zostera japonica}, year = {2013}, note = {This is an undergraduate student project report. Juvenile crabs need both protection from predators and easily available prey. These needs are met in complex habitats, such as eelgrass beds. This raises a question about the effects of the invasive Japanese eelgrass on the crabs, as contrasted with the native eelgrass. In this undergraduate research paper, a study of settlement patterns of Dungeness crabs is described. Bags of oyster shells were placed in beds of native and Japanese eelgrass and on mud. The number of juvenile crabs were counted after two weeks. {\textquotedblleft}Overall, M. magister abundance varies widely over the habitats we studied, and was highest in seagrass habitats, especially seagrass with a large biomass, as well as at a low tidal height.{\textquotedblright} Results indicated that Japanese eelgrass might be beneficial for crab larvae.}, pages = {13 p.}, publisher = {Oregon State University}, address = {Corvallis, Or.}, keywords = {crustaceans, decapods, Dungeness crab = Metacarcinus magister (Cancer magister), eelgrass = Zostera marina, geographic distribution, habitats, Japanese eelgrass = Zostera japonica, Oregon shore crab = Hemigrapsus oregonensis, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/undergraduate_thesis_or_projects/ms35t990c }, author = {Heidmann, Sarah and Jaco, Erin} } @mastersthesis {40806, title = {Direct Effects and Tradeoffs Affect Vegetative Growth and Sexual Reproduction in an Invasive Seagrass Experiencing Different Disturbance Regimes}, year = {2013}, note = {{\textquotedblleft}In this thesis, I have addressed three broad questions related to the role of disturbance in the invasion dynamics of dwarf eelgrass, Zostera japonica. My questions were: (1) Is there a relationship between disturbance severity at a site and seasonal trends in the allocation of resources to vegetative growth and sexual reproduction (flowering)? (2) Does increasing disturbance severity result in a tradeoff between the allocation of resources to sexual reproduction versus vegetative growth? (3) If so, what are the implications of these tradeoffs to the proliferation of this invasive species?{\textquotedblright} (p.50) A most interesting look at the relationship between anthropogenic disturbances in a watershed, resulting sedimentation and the spread of an invasive species. Major professor was Sally Hacker.}, pages = {61 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Zoology}, address = {Corvallis, Or.}, keywords = {aquatic vegetation, Coquille Point, Green Point, human impacts, Idaho Point, introduced species, Japanese eelgrass = Zostera japonica, Oregon Oyster Farms, Sally{\textquoteright}s Bend, sediments, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/xw42nb92g}, author = {Henderson, Jeremy Scott} } @article {77361, title = {NorWeST Stream Temp: Regional Database and Modeled Stream Temperatures [web page]}, year = {2013}, note = {This website gives water temperature data coupled with climate scenarios for western U.S. streams. Hundreds of biologists and hydrologists contributed to the temperature database. The database contains over 200,000,000 hourly stream temperature readings at more than 20,000 stream sites. The data were used to develop 36 historical and future climate scenarios at 1-kilometer resolution for over 1,000,000 stream kilometers. The website includes an interactive stream temperature viewer.}, publisher = {U.S. Rocky Mountain Research Station. Air, Water \& Aquatic Environments Program}, keywords = {Oregon, Pacific Northwest, Pacific Southwest, Intermountain West, water temperature, climate, environmental monitoring, mathematical modeling}, url = {https://www.fs.usda.gov/rm/boise/AWAE/projects/NorWeST.html}, author = {Isaak, D. J. and Wenger, S. J. and Peterson, E. E. and Ver Hoef, J. M. and Hostetler, S. and Luce, C. H. and Dunham, J. B. and Kershner, J. and Roper, B. B. and Nagel, D. and Horan, D. and Chandler, G. and Parkes, S. and Wollrab, S. and U.S. Rocky Mountain Research Station. Air Water \& Aquatic Environments Program} } @article {36106, title = {Riparian litter inputs to streams in the central Oregon Coast Range}, journal = {Freshwater Science}, volume = {32}, number = {1}, year = {2013}, note = {The type of vegetation along a stream bank influences the stream{\textquoteright}s ecosystem. Coniferous vegetation provides logs and year-long shade. Deciduous vegetation supplies important nutrients to streams and supports aquatic invertebrate populations. While Oregon{\textquoteright}s current forest management practices stress conifer-dominated riparian areas, the authors suggest that each type of vegetation makes valuable contributions to its streams, and that the ecosystems might benefit from occasional interruptions of different streamside vegetation types.}, month = {2013, Mar.}, pages = {p. 343{\textendash}358}, keywords = {Alsea River Basin, Big Elk Creek, ecosystem health, habitats, Lake Creek, Lobster Creek, Lower Alsea River, terrestrial vegetation, Upper Alsea River, water temperature, Yaquina River Basin}, doi = {10.1899/12-074.1}, url = {https://ir.library.oregonstate.edu/concern/articles/2v23vv040}, author = {Hart, Stephanie K. and Hibbs, David E. and Perakis, Steven S.} } @article {80461, title = {Some Marine Algae on Tsunami Debris [poster]}, year = {2013}, note = {On March 11, 2011, the great Tohoku earthquake shook Japan. The subsequent tsunami swept approximately 5 million tons of debris into the Pacific Ocean, some of which made its way across the Pacific and washed up on the North American West Coast. The debris carried hundreds of species, a surprising number of which survived the trip. In order to understand the potential for biological invasions, it was necessary to document these species. This poster documents some of the first algae identified. It is beautifully photographed.}, publisher = {Oregon State University. Dept. of Botany and Plant Pathology}, address = {Newport, Or.}, keywords = {coastal hazards, earthquakes, tsunamis, introduced species, algae, taxonomy, morphology, species list}, url = {https://ir.library.oregonstate.edu/concern/defaults/ns064b84v}, author = {Hansen, Gayle I.} } @article {54631, title = {Tsunami inundation scenarios for Oregon}, volume = {no. O-13-19}, year = {2013}, note = {This technical document accompanies the 2013 tsunami inundation map series for coastal Oregon. It describes the methodology used to produce the maps. In addition to the report, the CD includes GIS shapefiles with embedded metadata.}, pages = {17 p.}, institution = {Oregon Department of Geology and Mineral Industries}, address = {Portland, Or.}, keywords = {coastal hazards, earthquakes, general, maps, mathematical modeling, Oregon, tsunamis}, url = {https://www.oregongeology.org/pubs/ofr/O-13-19.pdf}, author = {Priest, George R. and Witter, Robert C. and Zhang, Y. Joseph and Wang, Kelin and Goldfinger, Chris and Stimely, Laura L. and English, John T. and Pickner, Sean G. and Hughes, Kaleena L. B. and Wille, Taylore E. and Smith, Rachel L. and Oregon. Department of Geology and Mineral Industries,} } @article {36566, title = {Upwelling-influence, macroalgal blooms, and seagrass production; temporal trends from latitudinal and local scales in northeast Pacific estuaries}, journal = {Limnology and oceanography}, volume = {58}, number = {3}, year = {2013}, note = {{\textquotedblleft}In coastal marine systems worldwide, land-based nutrient inputs are often correlated with blooms of macroalgae, which can negatively affect seagrass habitats. We used spatiotemporal trends in production to identify the role of marine-derived nutrients in mediating these interactions. Among ocean upwelling-influenced estuaries along the northeastern Pacific, we documented a negative correlation between annual production of ulvoid macroalgae and the seagrass, Zostera marina L., at a regional scale that included four estuaries along a 400 km distance. While macroalgal biomass was , 30 times greater in southern (Yaquina Bay and Coos Bay, Oregon) compared to northern (Willapa Bay, Washington, and Netarts Bay, Oregon) estuaries, no temporal patterns of eelgrass decline were observed within the estuaries over a 5 yr period{\textellipsis}{\textquotedblright} (from the Abstract)}, month = {2013, May}, pages = {p,1103-1112}, keywords = {algae, Coos Bay, eelgrass = Zostera marina, Netarts Bay, nitrogen, phosphorus, primary production, Ulva spp., upwelling, Willapa Bay, Yaquina Bay}, doi = {doi:10.4319/lo.2013.58.3.1103}, author = {Hessing-Lewis, Margot L. and Hacker, Sally D.} } @article {26966, title = {Ecological Baselines for Oregon{\textquoteright}s Coast: a Report for Agencies That Manage Oregon{\textquoteright}s Coastal Habitats for Ecological and Economic Sustainability, and for All Who Are Interested in the Welfare of Wildlife That Inhabit Our Coast and Its Estuaries}, year = {2012}, note = {"We begin this report with a chapter reviewing archaeological, ethnographic, and historic materials to provide a picture of Oregon{\textquoteright}s coastal resources before 1750. Subsequent chapters consider salmon, sea otters, and sub-tidal sea urchins." (p.7)}, pages = {79 p.}, institution = {Oregon State University}, address = {Corvallis, Or.}, keywords = {archeology, Coquille River estuary, ecosystem health, general ecosystem description, historical, marsh restoration, Pacific salmonids = Oncorhynchus species, purple sea urchin = Strongylocentrotus purpuratus, red sea urchin = Strongylocentrotus franciscanus, Salmon River Estuary, Sea otter = Enhydra lutris}, url = {https://ir.library.oregonstate.edu/concern/defaults/6d56zx411}, author = {Hall, Roberta L. and Ebert, Thomas A. and Gilden, Jennifer S. and Hatch, David R. and Mrakovcich, Karina Lorenz and Smith, Courtland L.} } @article {36201, title = {Hatfield Marine Science Center Dynamic Revetment Report DSL Permit $\#$45455-FP Monitoring Report February, 2012}, year = {2012}, note = {This is the first of a series of five annual reports concerning control of erosion along Yaquina Bay next to the Hatfield Marine Science Center. Parts of the shoreline were stabilized in 2007 and 2011. Before more dynamic revetments will be permitted, a five-year study of nearby unmodified shorelines is required. {\textquotedblleft}A Dynamic Revetment (gravel beach) was installed in November, 2011 on the shoreline along the northeastern edge of the HMSC to mitigate erosion that threatened HMSC critical infrastructure. Shoreline topographic and biological monitoring was initiated before and continued after the project completion. Monitoring of beach profiles along the project area showed that a Dynamic Revetment installed in 2007 had been successful in stabilizing further retreat of the beach. As of January 2012, the2011 project also appears to have stabilized the shoreline, while rapid erosion has continued in the adjacent Reference beach area. {\textquotedblleft} (from the Abstract) The report includes aerial photographs, charts and color photographs.}, pages = {31 p.}, institution = {Oregon State University. Hatfield Marine Science Center}, address = {Newport, Or.}, keywords = {American Coot = Fulica Americana, amphipods, aquatic invertebrates, beach wrack, beaches, benthos, birds, coastal hazards, erosion, fish, Hatfield Marine Science Center, Pacific staghorn sculpin = Leptocottus armatus, physical, Shiner perch = Cymatogaster aggregate, species list, terrestrial vegetation, wave height data, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/xd07gt292}, author = {Boehlert, George and Nelson, Walt and Allan, Jonathan and Harris, Erica and Stephensen, Shawn and Politano, Vincent and Folger, Christina L.} } @article {83285, title = {Sediment diatom species and community response to nitrogen addition in Oregon (USA) estuarine tidal wetlands}, journal = {Wetlands}, volume = {32}, number = {6}, year = {2012}, note = {Tested responses of sediment diatom communities in tidal wetlands of Yaquina Bay to nitrogen addition in the summers of 2009 and 2010. Identified 88 diatom taxa in the area. The four individual plots showed high species richness, of about 32-42 different species per plot. A strong response to nitrogen addition was found. Suggests that {\textquotedblleft}the sediment diatom community is a strong candidate for use as an aquatic bioassessment tool in tidal wetlands{\textellipsis}{\textquotedblright} (p.1029) }, month = {2012, Dec.}, pages = {p.1023-1031}, keywords = {algae, Amphora spp., aquatic vegetation, Cocconeis placentula, diatoms, fertilizers, Hatfield Marine Science Center, Idaho Point, nitrogen, Planothidium delicatulum, Sally{\textquoteright}s Bend, salt marsh, Saltgrass = Distichlis spicata, Saltwort = Sarcocornia virginica, wetlands, Yaquina Bay}, doi = {https://doi.org/10.1007/s13157-012-0332-6}, author = {Hankin, Shanon L. and Weilhoefer, Christine L. and Kaldy, James E. and DeWitt, Theodore H.} } @article {34536, title = {Settlement patterns of young-of-the-year rockfish among six Oregon estuaries experiencing different levels of human development}, journal = {Marine Ecology Progress Series}, volume = {448}, year = {2012}, note = {"The goal of this study was to investigate natural and anthropogenic influences on the estuarine settlement process of rockfishes, with a focus on black rockfish, S. melanops. Trap surveys conducted in 6 Oregon estuaries indicate that young-of-the-year (YOY; age 0) rockfish utilize ..multiple Oregon estuaries from spring through late fall... Catches were higher in the more developed estuaries, suggesting that the continued development of Oregon estuaries may not adversely affect the rockfish settlement process." (from the Abstract) This study is the first documentation of juvenile rockfish in the Nehalem, Siletz, Alsea and Coquille estuaries.}, pages = {p.143-154}, keywords = {Alsea Bay, Black rockfish = Sebastes melanops, Coos Bay, Coquille River estuary, habitats, human impacts, industrial development, juvenile fish, Nehalem River estuary, Rockfish = Sebastes spp., Siletz Bay, Yaquina Bay}, doi = {10.3354/meps09504}, url = {https://www.int-res.com/articles/meps2011/448/m448p143.pdf}, author = {Dauble, Alison D. and Heppell, Scott A. and Johansson, Mattias L.} } @article {34546, title = {Why did the chum cross the road? Genetics and life history of chum salmon in the southern portion of their range}, volume = {no.8}, year = {2012}, note = {This paper reports on a study of the genetics of chum salmon populations south of the Columbia River. "Preliminary analysis indicates there are few unique or private alleles in the coastal populations, and this suggests there are not "unique populations" from further south migrating into northern regions, but that these coastal fish are natural, indigenous populations." (p.136)}, month = {2011, Oct.30-31}, pages = {p.135-137}, institution = {North Pacific Anadromous Fish Commission}, address = {Nanaimo, B.C.}, keywords = {Bear Creek, chum salmon = Oncorhynchus keta, East Foley Creek, genetics, Miami River, Mill Creek, Moss Creek, Necanicum River, Nehalem River, population biology, Siletz River, Tillamook River, Yaquina River}, url = {https://npafc.org/wp-content/uploads/TechReport8.pdf}, author = {Johnson, Orlay W. and Elz, Anna and Hard, Jeffrey J. and Stewart, David}, editor = {Davis, Nancy D. and Chan, Claudia and North Pacific Anadromous Fish Commission,} } @article {82481, title = {A Conservation Assessment of West Coast (USA) Estuaries}, year = {2011}, note = {{\textquotedblleft}Funded by: The David and Lucile Packard Foundation{\textquotedblright} {\textquotedblleft}This assessment outlines an enhanced planning approach for West Coast estuaries that incorporates an evaluation of the regional context for estuarine conservation and recommends an approach to site-scale planning with more focus on ecological processes and functions.{\textquotedblright} (p.1) {\textquotedblleft}A hierarchical classification system was developed for West Coast estuaries that identified three regions (based on climate, latitude, and oceanography) and four estuary types distinguished by the relative degree of influence of the hydrodynamic forcing mechanisms of waves, tides, and rivers.{\textquotedblright} (p.2)}, pages = {65 p.}, institution = {The Nature Conservancy}, address = {Arlington, Va. }, keywords = {Agriculture, Alsea Bay, estuarine dynamics, habitats, human impacts, hydrology, land ownership, land use, logging, mathematical modeling, Netarts Bay, Salmon River, Siletz Bay, Siuslaw River, Tillamook Bay, Umpqua River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/defaults/1r66j546d}, author = {Gleason, Mary G. and Newkirk, Sarah and Merrifield, Matthew S. and Howard, Jeanette and Cox, Robin and Webb, Megan and Koepcke, Jennifer and Stranko, Brian and Taylor, Bethany and Beck, Michael W. and Fuller, Roger and Dye, Paul and Vander Schaaf, Dick and Carter, Jena} } @mastersthesis {34456, title = {Eelgrass-Macroalgae Interactions: Context-Dependency in Upwelling-Influenced Estuaries}, year = {2011}, note = {"Throughout these studies I demonstrated that the mechanisms determining context-dependency in upwelling-influenced estuaries are informed by physical and biogeochemical conditions, coupled with high ambient marine-derived nutrient concentrations. These findings are important to coastal management because they suggest that the strength, direction and mechanisms of interactions are shaped by local abiotic conditions and long-term nutrient regimes, rather than high nutrient concentrations per se." (p.iii) Co-major professors were Sally D. Hacker and Bruce A. Menge.}, pages = {136 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Zoology}, address = {Corvallis, Or.}, keywords = {algae, Coos Bay, eelgrass = Zostera marina, Netarts Bay, nutrient cycles, South Slough (Coos Bay), spatial distribution, species composition, temporal distribution, theses, Ulva species, upwelling, Willapa Bay, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/mp48sg67r}, author = {Hessing-Lewis, Margot} } @article {34516, title = {Joint Permit Application to Stabilize Portion of Yaquina Bay Shoreline at Hatfield Marine Science Center (area of erosion along eastern edge of HMSC property)}, year = {2011}, note = {These four items document the 2010-2011 permitting process to stabilize the eastern edge of the Hatfield Marine Science Center property. During late 2006, erosion forced the closure of the HMSC public estuary trail. In March 2007, an erosion control project using a gravel beach or "dynamic revetment" resulted in the stabilization of approximately 200 linear feet of shoreline. This remains stable since that time. Erosion continued at a slower rate south the original project. In the winter of 2009-2010, weather conditions resulted in rapid erosion of up to 13 feet along approximately 500 feet of the shoreline. This erosion moved the shoreline to the edge of the HMSC nature trail in one location and with 25 feet of the 800,00 gallon seawater storage facility. To address the erosion, the HMSC applied for a permit to extend the {\textquoteright}dynamic revetment{\textquoteright}. The permit was granted with limitations. The permit application, public comments and final approval are included. Includes documents from the U.S. Army Corps of Engineers and comments from the Oregon Dept. of Fish and Wildlife.}, institution = {Hatfield Marine Science Center}, address = {Newport, Or.}, keywords = {coastal hazards, erosion, ghost shrimp = Neotrypaea californiensis, habitats, Hatfield Marine Science Center, juvenile fish, mitigation, natural resource management, sediments, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/6682x4405}, author = {Hatfield Marine Science Center, and Oregon State University} } @article {34411, title = {Biological Assessment and Essential Fish Habitat Assessment for the Construction of NOAA{\textquoteright}s Marine Operations Center-Pacific in Newport, Oregon (Township 11 South, Range 11 West, and Section 17 6th field HUC 171002040303)}, year = {2010}, note = {"This is a Biological Assessment (BA) addressing the potential effects on aquatic species currently listed or proposed for listing under the Federal Endangered Species Act (ESA) from the construction of the National Oceanic and Atmospheric Administration{\textquoteright}s (NOAA) Marine Operations Center {\textendash} Pacific (MOC-P) in Newport, Oregon." (from the Introduction) Includes maps, charts, aerial photographs, colored illustrations, architectural drawings and construction schematics.}, month = {2010, Jun. 2}, pages = {643 p.}, institution = {Pacific Habitat Services, Inc.}, address = {Wilsonville, Or.}, keywords = {Coho salmon = Oncorhynchus kisutch, depleted populations, dredging, eelgrass = Zostera marina, Green sturgeon = Acipenser medirostris, habitats, Hatfield Marine Science Center, human impacts, introduced species, killer whale = Orca orcinus, life history information, mitigation, NOAA Marine Opeations Center - Pacific, Pacific smelt = Thaleichthys pacificus, salinity, sediments, Steller sea lion=Eumetopias jubatus, water quality, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/t722h939f}, author = {van Staveren, John and Hawkins, Amy and Tumer, Craig and Groff, Dale and Lomnicky, Gregg and Pacific Habitat Services Inc.,} } @article {34341, title = {Essential Habitat Identification for Age-0 Rockfish along the Central Oregon Coast}, journal = {Marine and Coastal Fisheries: Dynamics, Management, and Ecosystem Science}, volume = {2}, year = {2010}, note = {This article seeks to identify essential habitat for black rockfish and blue rockfish. Nearshore reefs were essential for blue rockfish, while estuaries provided essential fish habitat for black rockfish. "Settlement patterns suggest that black rockfish had a strong preference for anthropogenic habitat (docks, pilings, jetties) within the Yaquina Bay estuary. . . Small sample sizes of juvenile yellowtail rockfish S. flavidus and widow rockfish S. entomelas suggest that estuaries are also important for these species." [from the abstract]}, pages = {p.60-72}, keywords = {behavior, Black rockfish = Sebastes melanops, Blue rockfish = Sebastes mystinus, geographic distribution, habitat conservation, habitats}, doi = {10.1577/C09-032.1}, author = {Gallagher, M. Brett and Heppell, Selina S.} } @article {51281, title = {Geochemistry and petrology of late Eocene Cascade Head and Yachats Basalt and alkalic intrusions of the central Oregon Coast Range, U.S.A.}, journal = {Journal of Volcanology and Geothermal Research}, volume = {198}, number = {3-4}, year = {2010}, note = {Did the volcanic rocks in the Oregon Coast Range originate from {\textquotedblleft}magmetism associated with extension of the coast ranges{\textquotedblright} or did they come from {\textquotedblleft}hot spots associated with mantle plumes,{\textquotedblright} possibly even related to the Yellowstone hot spot? (p.311) The authors of this paper use geochemical and isotopic data to inform their discussion of the probable origins of these deposits. }, month = {2010, Dec.15}, pages = {p.311-324}, keywords = {basalt, Blodgett Peak, Butler Peak, Cannibal Mountain, Cape Perpetua, Cascade Head Basalt, Cougar Mountain, geology, Heceta Head, Horner Ranch, paleosciences, Siletz River Volcanics, Table Mountain, volcanism, Yachats Basalt, Yaquina Head}, doi = {10.1016/j.jvolgeores.2010.09.016}, author = {Parker, D. F. and Hodges, F. N. and Perry, A. and Mitchener, M. E. and Barnes, M. A. and Ren, M.} } @article {34316, title = {Nuclear rDNA sequences of Wittrockiella amphibia (Collins) comb. nov. (Cladophorales, Chlorophyta) and morphological characterization of the mat-like growth form}, journal = {Botanica Marina}, volume = {53}, number = {4}, year = {2010}, note = {"Cladophora amphibia was found in Yaquina Bay (Oregon, USA) for the first time since the type collection from California in 1903. Vegetative plants were buried in the top centimeter of intertidal mud, partially covered by mats of Rhizoclonium and Chaetomorpha."}, pages = {p.351-356}, keywords = {algal species, Cladophora amphibia, genetics, taxonomy, Wittrockiella amphibia (Collins) comb. nov., Wittrockiella paradoxa, Yaquina Bay}, doi = {10.1515/BOT.2010.040}, author = {Boedeker, Christian and Hansen, Gayle I.} } @proceedings {34361, title = {Ocean Observing Data and Science Center Visitors: Creating Motivation and Relevance}, volume = {2010}, number = {February}, year = {2010}, pages = {p.22-26}, publisher = {American Geophysical Union}, address = {Portland, OR}, keywords = {education, Oregon State University Hatfield Marine Science Center, physical}, author = {Mikulak, S. and Rowe, Shawn and Hunter, Nancee and Orrico, S.} } @book {34351, title = {The Port of Toledo, Oregon, 1910-2010}, year = {2010}, note = {"Because of gaps in the evidence, this is not intended as a detailed chronology... It is an attempt to form a plausible narrative of salient trends and events through 100 years." (Preface) Map, aerial photograph, photographs. A valuable resource for local history.}, pages = {75 p.}, publisher = {Port of Toledo}, organization = {Port of Toledo}, address = {[Toledo, Or.] }, keywords = {commercial fisheries, dredging, historical, industrial development, logging, Port of Toledo, ports, Yaquina River}, author = {Hitchman, James H.} } @article {34356, title = {Rupture area and displacement of past Cascadia great earthquakes from coastal coseismic subsidence}, journal = {Geological Society of America Bulletin.}, volume = {122}, number = {11-12}, year = {2010}, pages = {p.2079-2096}, keywords = {Alsea Bay, Coos Bay, Coquille River, earthquakes, geology, Necanicum River, Nehalem River, Nestucca Bay, Netarts Bay, Salmon River, sediments, Siletz Bay, Siuslaw River, Sixes River, Tillamook Bay, tsunamis, Umpqua River, Yaquina Bay}, doi = {10.1130/B30108.1}, author = {Leonard, Lucinda J. and Currie, Claire A. and Mazzotti, Stephane and Hyndman, Roy D.} } @book {34246, title = {Biological recovery criteria for the Oregon Coast coho salmon evolutionarily significant unit}, series = {NOAA Technical Memorandum NMFS-NWFSC}, volume = {no.91}, year = {2008}, month = {2008}, pages = {199 p.}, publisher = {U.S. National Marine Fisheries Service, Northwest Fisheries Science Center}, organization = {U.S. National Marine Fisheries Service, Northwest Fisheries Science Center}, address = {[Seattle, Wa.]}, keywords = {Alsea River, Beaver Creek, Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, depleted populations, Floras Lake, Lower Umpqua River, Middle Umpqua River, Necanicum River, Nehalem River, Nestucca River, North Umpqua River, population biology, population count, Salmon River, Siletz River, Siltcoos Creek, Siuslaw River, Sixes River, South Umpqua River, statistical analysis, Tahkenitch Creek, Tenmile Creek, Tillamook Bay, Yaquina River}, url = {https://repository.library.noaa.gov/view/noaa/3577}, author = {Wainwright, Thomas C. and Chilcote, Mark W. and Lawson, Peter W. and Nickelson, Thomas E. and Huntington, Charles W. and Mills, Justin S. and Moore, Kelly M. S. and Reeves, Gordon H. and Stout, Heather A. and Weitkamp, Laurie A.} } @article {51266, title = {Macroinvertebrate Report: Oregon Coast Coho Evolutionarily Significant Unit (2006-2007): Final Report}, year = {2008}, note = {One way to measure a stream{\textquoteright}s health is to count the aquatic insects in it. {\textquotedblleft}This report summarizes macroinvertebrate data collected in cooperation with the ODFW in the twenty-one independent coho populations units from 2006-2007. These data were collected by ODFW crews and analyzed by ODEQ staff. Biological integrity, temperature stress and fine sediment stress were evaluated for each of the twenty-one population units.{\textquotedblright} (p.4) There are good data here. }, pages = {34 p.}, institution = {Oregon. Dept. of Environmental Quality. Laboratory and Environmental Assessment Division,}, address = {Hillsboro, Or.}, keywords = {Alsea River, aquatic invertebrates, Beaver Creek, Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, ecosystem health, insects, Lower Umpqua River, Middle Umpqua River, Necanicum River, Nehalem River, Nestucca River, Salmon River, sediment data, sediments, Siletz River, Siuslaw River, South Umpqua River, Tillamook Bay, water temperature, Yachats River, Yaquina River}, url = {https://library.state.or.us/repository/2009/200902091133141/}, author = {Hubler, Shannon and Oregon. Dept. of Environmental Quality. Laboratory and Environmental Assessment Division, and Oregon Watershed Enhancement Board,} } @article {34221, title = {The potential for mitten crab Eriocheir sinensis H. Milne Edwards, 1853 (Crustacea: Brachyura) invasion of Pacific Northwest and Alaskan Estuaries}, journal = {Biological Invasions}, volume = {10}, number = {5}, year = {2008}, note = {The estuaries of the Pacific Northwest are generally too small, too cold, and have too short flushing times to permit mitten crabs to thrive in them. Coos Bay and Yaquina Bay were studied in Oregon.}, pages = {p.603-614}, keywords = {Coos Bay, introduced species, Mitten crab = Eriocheir sinensis, Yaquina Bay}, doi = {10.1007/s10530-007-9156-3}, author = {Hanson, Erik and Sytsma, Mark} } @article {34216, title = {Re-emergence of Vibrio tubiashii in bivalve shellfish aquaculture: severity, environmental drivers, geographic extent and management}, journal = {Diseases of Aquatic Organisms}, volume = {82}, year = {2008}, note = {An outbreak of vibriosis that appeared on the West Coast in the summer of 2006 and peaked in 2007 is described, along with methods of reducing contamination. Relationships between oyster die-offs and severe upwellings and El Nino are suggested. "We first recorded a severe outbreak of vibriosis, for which the etiological agent was later confirmed to be toxigenic Vibrio tubiashii, in 1998 from a hatchery on Netarts Bay. The SST [sea surface temperature] during this period was unusually elevated and remarkably similar to the elevated temperature regime observed in 2007, when severe vibriosis re-emerged."}, pages = {p.119-134}, keywords = {aquaculture, molluscs, Netarts Bay, shellfish disease, Vibrio tubiashii, Yaquina Bay}, doi = {10.3354/dao01982}, url = { https://www.int-res.com/articles/dao_oa/d082p119.pdf}, author = {Elston, Ralph A. and Hasegawa, Hiroaki and Humphrey, Karen L. and Polyak, Ildiko K. and Hase, Claudia C.} } @article {83254, title = {Small Dam Removal in Oregon: A Guide for Project Managers}, year = {2008}, note = {{\textquotedblleft}As a result of changing technology and values, many small dams in Oregon have out-lived their original purpose due to changes in Oregon{\textquoteright}s economic and resource landscape. These relic dams that have out-lived their useful lives are good candidates for removal. The financial burden of maintaining an aging structure can far outweigh the benefits of keeping it{\textquotedblright} (p.1). Color illustrations.}, month = {2008, Dec.}, pages = {70 p.}, institution = {Oregon Watershed Enhancement Board }, address = {Salem, Or.}, keywords = {dams, ecosystem health, fish passage, water temperature}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A16500/datastream/OBJ/view }, author = {Hoffert-Hay, Denise and Oregon Watershed Enhancement Board,} } @mastersthesis {34151, title = {A GIS Evaluation of Land Use Zones and Water Quality for Marine Conservation Site Selection in Lincoln County, Oregon}, year = {2007}, note = {Shows land use (most by State of Oregon) of estuarine lands in Lincoln County. Points out water quality issues. GIS as planning tool. Identifies 4000 meter land-use zone as the best point of measurement for determining water quality impacts and for estuary management decisions. Appendix gives permitted land use in Lincoln County. Colored maps.Michael Harte was the major professor. This report is a Capstone Project in lieu of a thesis.}, pages = {74 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S. }, chapter = {College of Oceanic and Atmospheric Sciences, Marine Resource Management Program}, address = {Corvallis, Or.}, keywords = {geographical information systems, land ownership, land use, theses}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/c821gp900}, author = {Henderson, Ann Miller} } @book {34161, title = {Identification of historical populations of Coho salmon (Oncorhynchus kisutch) in the Oregon coast evolutionarily significant unit}, series = {NOAA Technical Memorandum NMFS-NWFSC}, volume = {no.79}, year = {2007}, note = {Important report on coho stocks and their genetic relationships.}, month = {2007, Jan.}, pages = {129 p.}, publisher = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service}, organization = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service}, address = {[Seattle, Wash.]}, keywords = {abundance, Alsea Basin, aquatic vegetation, Beaver Creek, biological, Coho salmon = Oncorhynchus kitsutch, commercial fisheries - salmon, Coos Bay, Coquille River, depleted populations, Devil{\textquoteright}s Lake, general ecosystem description, human impacts, hydrology, natural resource management, Necanicum Bay, Nehalem Bay, Nestucca River estuary, Netarts Bay, recreational fisheries - salmon, Salmon River, Sand Lake, Siletz River, Siltcoos Creek, Siuslaw River, Sixes River, Tahkenitch Creek, Tenmile Creek, terrestrial vegetation, Tillamook Bay, Umpqua River Basin, Yaquina River Basin}, url = {https://www.arlis.org/docs/vol1/123357711.pdf}, author = {Lawson, Peter W. and Bjorkstedt, Eric P. and Chilcote, Mark W. and Huntingdon, Charles W. and Mills, Justin S. and Moore, Kelly M. S. and Nickelson, Thomas E. and Reeves, Gordon H. and Stout, Heather A. and Wainwright, Thomas C. and Weitkamp, Laurie A.} } @article {83250, title = {Limiting Factors Assessment and Restoration Plan: Buttermilk, Spilde, and Yaquina Headwaters, Sixth Fields Tributaries to the Yaquina Basin}, year = {2007}, note = {{\textquotedblleft}This document provides watershed restoration actions proposed to enhance the coho salmon population within the Buttermilk, Spilde and Yaquina Headwaters Sixth Field basins in Lincoln County, Oregon. . . The goal of the restoration effort has been to identify the dominant processes and habitat characteristics that currently limit the production of coho salmon smolts in the subbasins, and to develop a prioritized list of actions ({\textquoteleft}prescriptions{\textquoteright}) for removing the limitations in ways that normalize landscape and stream channel function{\textquotedblright} (from the Introduction).}, month = {2007, Sep.}, pages = {130 p.}, institution = {Mid-Coast Watersheds Council}, address = {Newport, Or.}, keywords = {agriculture, American beaver = Castor canadensis, Bryant Creek, Buttermilk Creek, Coho salmon = Oncorhynchus kisutch, cutthroat trout = Oncorhynchus clarki, dissolved oxygen, Felton Creek, fish passage, habitat restoration, habitats, human impacts, Humphry Creek, hydrology, Little Yaquina River, marshes, Randall Creek, Spilde Creek, Stony Creek, water quality, water temperature, Yaquina River, Young Creek}, url = {https://tinyurl.com/bdum9rme }, author = {Bio-Surveys LLC, and Holbert, Mary and Sialis Company,,} } @article {34146, title = {Small-scale heterogeneity in the geochemistry of seagrass vegetated and non-vegetated estuarine sediments: causes and consequences}, journal = {Aquatic Geochemistry}, volume = {13}, number = {1}, year = {2007}, note = {Study of seagrass growth in Yaquina illustrates the complexity of the environment and the biological and geochemical processes taking place.}, pages = {p.19-39}, keywords = {carbon cycle, eelgrass=Zostera marina, geochemistry, Idaho Point, sediments, sulfur cycle, Yaquina Bay}, doi = {10.1007/s10498-006-9007-3}, author = {Hebert, Andrew B. and Morse, John W. and Eldridge, Peter M.} } @article {34086, title = {Development of an autonomous in-situ analyzer for dissolved copper in the marine environment}, journal = {EOS, Transactions of the American Geophysical Union}, volume = {87}, number = {36, suppl.}, year = {2006}, month = {September, 2006}, pages = {np}, keywords = {chemical, Yaquina Bay}, author = {Holm, C.E. and Chase, Z. and Johnson, K.S. and Jannasch, H.W.} } @mastersthesis {82979, title = {Riparian Litter Inputs to Streams in the Central Oregon Coast Range}, year = {2006}, note = {{\textquotedblleft}Riparian zone vegetation can influence terrestrial and aquatic food webs through variations in the amounts, timing, and nutritional content of leaf and other litter inputs. Differences in vegetation composition and density, as well as riparian topography, may modulate the strength and quality of these inputs. Changes in inputs to small order streams affect the processes and condition of adjacent and downstream reaches based on the amount of particulate organic matter that is intercepted, retained, or exported. The central Oregon Coast Range provides an ideal opportunity to study how deciduous dominated and coniferous dominated riparian forests influence small streams within a matrix of managed riparian forests.{\textquotedblright} (from the Abstract) Co-major professors were David E. Hibbs and Steven S. Perakis.}, pages = {102 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {College of Forestry, Forest Science}, address = {Corvallis, Or.}, keywords = {Alsea River Basin, Big Elk Creek (Yaquina), carbon, Douglas fir = Pseudotsuga menziesii, ecosystem health, food webs, habitats, Lake Creek (Siuslaw), Lobster Creek (Alsea), Lower Alsea River, nitrogen, Red alder = Alnus rubra, Siuslaw River, terrestrial}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/k930c156g }, author = {Hart, Stephanie K.} } @mastersthesis {34001, title = {A Historical Reconstruction and Land Use history of Six Tidal Wetlands in Oregon}, year = {2005}, note = {"This Master{\textquoteright}s Degree project is intended to document historical ecological conditions and land use histories during the past 150 years for selected Oregon watersheds and tidal wetland sites. The sites are the subject of current research into the ability of tidal wetlands to provide rearing habitat and prey for juvenile salmonids." Maps, aerial photographs, photographs. The author studied two wetland sites per estuary: one close to the ocean entrance, and one upstream. A good resource for historical research on estuary use. Capstone project.}, pages = {168 p.}, school = {Oregon State University}, type = {Capstone Project}, edition = {M.S.}, chapter = {College of Oceanic and Atmospheric Sciences, Marine Resource Management Program}, address = {Corvallis, Or.}, keywords = {agriculture, Alsea River, archeology, dams, ecological succession, general ecosystem description, historical, human impacts, industrial development, land use, logging, Siuslaw River, theses, wetland delineation, wetland restoration, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/graduate_projects/vh53x113r}, author = {Hennessey, Jennifer Taylor} } @article {33826, title = {Biotic resistance experienced by an invasive crustacean in a temperate estuary}, journal = {Biological Invasions}, volume = {5}, number = {1-2}, year = {2003}, month = {2003}, pages = {33-43}, keywords = {biological, green crab=Carcinus maenas, introduced species, life history information, Oregon Coast Aquarium, Oregon State University Hatfield Marine Science Center, Port of Newport Dock 5, Port of Toledo, Red rock crab=Cancer productus, Sally{\textquoteright}s Bend, South Beach Marina, The Bend, Weiser Point}, doi = {10.1023/A:1024011226799}, author = {Hunt, Chris and Yamada, Sylvia B.} } @article {33861, title = {Estuarine influence on survival rates of coho (Oncorhynchus kisutch) and Chinook salmon (Oncorhynchus tshawytscha) released from hatcheries on the U.S. Pacific Coast}, journal = {Estuaries}, volume = {26}, number = {4B}, year = {2003}, note = {From the PNCERS Study, a seven-year program that focused on four estuaries in Washington and Oregon: Gray{\textquoteright}s Harbor, Willapa Bay, Yaquina Bay and Coos Bay. This paper compared 20 estuaries in Oregon and Washington. "This study demonstrates for the first time a direct link between estuarine condition and survival of salmon..." Pristine (less developed) estuaries have better fall chinook salmon survival rates. }, pages = {1094-1103}, keywords = {Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch}, doi = {10.1007/BF02803366}, author = {Magnusson, A. and Hilborn, R.} } @article {33831, title = {Interactions between human communities and estuaries in the Pacific Northwest: trends and implications for management}, journal = {Estuaries}, volume = {26}, number = {4B}, year = {2003}, note = {From the PNCERS Study, a seven-year program that focused on four estuaries in Washington and Oregon: Gray{\textquoteright}s Harbor, Willapa Bay, Yaquina Bay and Coos Bay. In addition to these four estuaries, this paper addresses Tillamook Bay and Tillamook County residents.}, pages = {994-1009}, keywords = {demographics, economics, environmental values, perceived threats to estuaries}, doi = {10.1007/BF02803359}, author = {Huppert, Daniel D. and Johnson, Rebecca L. and Leahy, Jessica and Bell, Kathleen} } @article {33821, title = {Oceanography of the U.S. Pacific Northwest coastal ocean and estuaries with application to coastal ecology}, journal = {Estuaries}, volume = {26}, number = {4B}, year = {2003}, note = {From the PNCERS Study, a seven-year program that focused on four estuaries in Washington and Oregon: Gray{\textquoteright}s Harbor, Willapa Bay, Yaquina Bay and Coos Bay.}, pages = {1010-1031}, doi = {10.1007/BF02803360}, author = {Hickey, Barbara M. and Banas, Neil S.} } @article {33911, title = {Relationships between water and sediment characteristics and benthic green macroalgal abundance in Yaquina Bay, Oregon: 1999-2002}, journal = {Journal of Phycology}, volume = {39}, number = {S1}, year = {2003}, note = {Abstract only}, month = {2003}, pages = {62}, keywords = {biological, ecosystem health, green algae, Yaquina Bay}, isbn = {0022-3646}, author = {Young, David R. and Ozretich, Robert J. and Specht, David T. and Lamberson, Janet O. and Caldwell, Richard S. and Hansen, G.I. and Stoffey, B.} } @article {33761, title = {Yaquina Bay living: profile of a community in transition: a report on residents{\textquoteright} attitude about their environment}, volume = {no.02-09}, year = {2002}, institution = {Washington Sea Grant}, address = {Seattle, WA}, keywords = {demographics, general, human impacts, Yaquina Bay}, url = {https://repository.library.noaa.gov/view/noaa/44109}, author = {Johnson, Rebecca and Farley, Christopher and Bell, Kathleen and Huppert, Daniel and Washington Sea Grant, and Pacific Northwest Coastal Ecosystems Regional Study} } @article {25941, title = {Zooplankton invasions: a brief review, plus two case studies from the northeast Pacific Ocean}, journal = {Hydrobiologia}, volume = {480}, number = {1-3}, year = {2002}, note = {Traces the expansion of two species of Asian copepods on the West Coast. The species invading Oregon estuaries is Pseudodiaptomus inopinus.}, pages = {p.87-110}, keywords = {Coos Bay, Coquille River estuary, invasive species, Pseudodiaptomus inopinus, Siuslaw River estuary, Tillamook Bay, Umpqua River, Winchester Bay, Yaquina Bay, zooplankton}, doi = {10.1023/A:1021233018533}, author = {Bollens, Stephen M. and Cordell, Jeffery R. and Avent, Sean and Hoof, Rian} } @mastersthesis {33656, title = {The Role of Predation by the Red Rock Crab, Cancer productus, on the Invasive European Green Crab, Carcinus maenas, in Yaquina Bay, Oregon}, year = {2001}, note = {Major professor was Sylvia Yamada.}, month = {2001}, pages = {105 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fisheries and Wildlife}, address = {Corvallis, Or.}, keywords = {biological, green crab=Carcinus maenas, Idaho Flats, introduced species, life history information, Marine Science Center Dock, Oneatta Point, Port of Newport Dock 7, Port of Toledo, Red rock crab=Cancer productus, Sally{\textquoteright}s Bend, South Beach Marina, theses, Weiser Point}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/wd375z26s}, author = {Hunt, Christopher Erik} } @article {83287, title = {Socio-economic dynamics of Pacific Northwest estuaries}, year = {2001}, note = {In this chapter, we begin by describing the regional economies and human populations of the areas surrounding five Pacific Northwest estuaries: Grays Harbor and Willapa Bay in Washingon, and Coos Bay, Yquina Bay and Tillamook Bay in Oregon. Recognizing the nature of the local economies and the demographic characteristics of residents is fundamental to establishing the socio-economic baslein. In the second and third sections, we build on the baseline descriptions and focus on important findings from the Coastal Resident Survey and Coastal Visitor Survey.}, pages = {p.58-75}, institution = {Coastal Ocean Programs, NOAA}, keywords = {biological, demographics, economics, human impacts, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/defaults/4m90dw29q}, author = {Bell, Kathleen and Farley, Christopher and Huppert, Daniel and Johnson, Rebecca and Leschine, Thomas}, editor = {Parrish, J.K. and Litle, Kate} } @article {33561, title = {Current status of the European green crab, Carcinus maenas, and native crab species in Yaquina and Coos Bays}, journal = {Journal of Shellfish Research}, volume = {19}, number = {1}, year = {2000}, month = {June_2000}, pages = {686}, keywords = {biological, Coos Bay estuary, dungeness crab=Metacarcinus magister (Cancer magister), geographic distribution, green crab=Carcinus maenas, introduced species, life history information, Red rock crab=Cancer productus, striped shore crab=Pachgrapsus crassipes, Yaquina Bay, yellow shore crab=Hemigrapsus oregonensis}, author = {Hauck, Laura L and Yamada, Sylvia B.} } @article {33546, title = {Geographic signatures of North American West Coast estuaries}, journal = {Estuaries and Coasts}, volume = {23}, number = {6}, year = {2000}, note = {General review.}, pages = {p.765-792}, keywords = {Alsea River, brids, commercial fisheries, Coos Bay, economics, general, human impacts, marshes, Nehalem Bay, Netarts Bay, recreational fisheries, Rogue River, salmonid species, Siletz River, Siuslaw River, Tillamook Bay, Umpqua River, wetlands, Yaquina River}, author = {Emmett, Robert and Llans{\'o}, Roberto and Newton, Jan and Thom, Ron and Hornberger, Michelle and Morgan, Cheryl and Levings, Colin and Copping, Andrea and Fishman, Paul} } @article {33566, title = {Potential limitations of the European green crab, Carcinus maenas, in habitat suitable for the native Red Rock crab, Cancer productus}, journal = {Journal of Shellfish Research}, volume = {19}, number = {1}, year = {2000}, pages = {632}, keywords = {biological, geographic distribution, green crab=Carcinus maenas, introduced species, Red rock crab=Cancer productus, Yaquina Bay}, author = {Hunt, Chris} } @article {33631, title = {Socio-economic dynamics of Pacific Northwest estuaries}, year = {2000}, note = {In this chapter, we begin by describing the regional economies and human populations of the areas surrounding five Pacific Northwest estuaries: Grays Harbor and Willapa Bay in Washingon, and Coos Bay, Yquina Bay and Tillamook Bay in Oregon. Recognizing the nature of the local economies and the demographic characteristics of residents is fundamental to establishing the socio-economic baslein. In the second and third sections, we build on the baseline descriptions and focus on important findings from the Coastal Resident Survey and Coastal Visitor Survey.}, month = {2001}, pages = {p.58-75}, institution = {Coastal Ocean Programs, NOAA}, keywords = {biological, demographics, economics, human impacts, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/defaults/4m90dw29q}, author = {Bell, Kathleen and Farley, Christopher and Huppert, Daniel and Johnson, Rebecca and Leschine, Thomas}, editor = {Parrish, J.K. and Litle, Kate} } @mastersthesis {36126, title = {Use of Tethered Prey for Estimating the Impact of the Invasive European Green Crab}, year = {2000}, note = {Feeding methods can be hallmarks of different species. Crabs, for example, eat snails, but different crabs take different approaches for getting snail meat. The Dungeness crab uses its powerful claws to crush its prey, while the invasive European green crab was most likely to pull its prey from the shell. In this study, snails were epoxied to monofilament lines that were placed in various sampling sites around Coos and Yaquina bays. When the lines were pulled up, the fate of the snails was determined and scored according to the method of predation. The study showed a high (65-68\%) rate of predation on gastropods at Yaquina Bay sites by the European green crab, which the author calls, {\textquotedblleft}a red flag that should alert us to the potential impact of this voracious predator on native mollusks.{\textquotedblright} (p.46) Senior thesis for the Bachelor of Science in the Department of Biology, Oregon State University, Corvallis, Oregon.}, pages = {49 p.}, school = {Oregon State University}, type = {Bachelors Thesis}, edition = {B.S.}, chapter = {Dept. of Biology}, address = {Corvallis, Or.}, keywords = {Charleston Bridge, Coos Bay, Coquille Point, Dungeness crab = Metacarcinus magister (Cancer magister), European green crab = Carcinus maenas, feeding behavior, Fossil Point, Hatfield Marine Science Center, Idaho Point, invasive species, Jordan Cove, McLean Point, Oregon shore crab = Hemigrapsus oregonensis, Pigeon Point, Pony Point, population count, predation, Purple shore crab = Hemigrapsus nudus, Red rock crab = Cancer productus, Sawyer{\textquoteright}s Landing, Sitka periwinkle = Littorina sitkana, Striped shore crab = Pachygrapsus crassipes, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/defaults/12579t005}, author = {Hauck, Laura L} } @proceedings {33511, title = {The arrival of the European green crab, Carcinus maenas, in Oregon estuaries}, volume = {no.99-004}, year = {1999}, note = {Conference held Jan_27-29 1999.}, pages = {p.94-99}, publisher = {Massachusetts Institute of Technology, Cambridge MA}, address = {Massachusetts Institute of Technology, Cambridge MA}, keywords = {biological, Columbia River estuary, Coos Bay estuary, Coquille River estuary, green crab=Carcinus maenas, introduced species, life history information, Netarts estuary, Oregon State University Hatfield Marine Science Center, Salmon River Estuary, Siletz River estuary, Siuslaw River estuary, Tillamook estuary, Umpqua River estuary, Yaquina Bay}, isbn = {1561720259}, author = {Yamada, Sylvia B. and Hunt, Chris and Richmond, N.}, editor = {Pederson, J} } @book {36746, title = {Status review of coastal cutthroat trout from Washington, Oregon, and California}, series = {NOAA Technical Memorandum NMFS-NWFSC}, year = {1999}, note = {The Biological Review Team concluded that coastal stocks of cutthroat trout were not presently at risk of extinction. Appendix 1-A gives the known history of hatchery releases in streams and lakes.}, month = {1999}, publisher = {Northwest Fisheries Science Center}, organization = {Northwest Fisheries Science Center}, address = {[Seattle, Wash.]}, keywords = {Alsea Fish Hatchery, Alsea River, Chetco River, Coos Bay, Coos River, Coquille River, cutthroat trout = Oncorhynchus clarki, Devils Lake, endangered species, environmental policy and law, general ecosystem description, genetics, hatcheries, history, Kilchis River, life history information, Miami River, Millicoma River, natural resource management, Necanicum River, Nehalem River, Nestucca River, population biology, population count, Rogue River, Salmon River, salmonid species, Sand Creek, Siltcoos Lake, Siuslaw River, Smith River, statistics, Tahkenitch Lake, Tenmile Creek, Tillamook River, Trask River, Umpqua River, Wilson River, Yachats River, Yaquina River}, url = {https://repository.library.noaa.gov/view/noaa/3066}, author = {Johnson, Orlay W. and Ruckelshaus, Mary H. and Grant, W. Stewart and Waknitz, F. William and Garrett, Ann M. and Bryant, Gregory J. and Neely, Kathleen and Hard, Jeffrey J. and Northwest Fisheries Science Center (U.S.),} } @article {33366, title = {Cost of impressed current cathodic protection for coastal Oregon bridges}, journal = {Materials Performance}, volume = {37}, number = {7}, year = {1998}, month = {1998}, keywords = {human impacts, Yaquina Bay Bridge}, author = {Holcomb, Gordon R. and Cryer, Curtis B.} } @inbook {51441, title = {Formula-based hazard assessment methodologies for coastal bluff-backed and slide-backed shorelines, Yaquina Head to Seal Rock, Lincoln County, Oregon}, booktitle = {Environmental, Groundwater and Engineering Geology: Applications from Oregon}, series = {Special Publication / Association of Engineering Geologists}, volume = {no.11}, year = {1998}, note = {Gives a formula for calculating how far developments should be set back from the cliff edge in order to account for expected erosion and slides. The area north of Grant Creek had a much higher rate of erosion.}, pages = {p.451-463}, address = {Belmont, Cal.}, keywords = {Agate Beach, coastal hazards, erosion, geology, Grant Creek, Jump-Off Joe, landslides, Lost Creek, Seal Rock, soils, South Beach, Yaquina Head}, author = {Gless, J. Douglas and Humphrey, Christopher C.}, editor = {Burns, Scott} } @conference {33371, title = {Socioeconomic causes and consequences of coastal ecosystems change}, booktitle = {Change in Pacific Northwest coastal ecosystems: proceedings of the Pacific Northwest Coastal Ecosystems Regional Study Workshop.}, series = {NOAA Coastal Ocean Program Decision Analysis Series}, volume = {no.11}, year = {1998}, note = {Meeting held Aug. 13-14, 1996. Recommends changes in criteria for decision-making.}, month = {Aug. 13-14 1996}, pages = {39-89}, publisher = {NOAA Coastal Ocean Office}, organization = {NOAA Coastal Ocean Office}, address = {Troutdale, Or.}, keywords = {biological, ecological values, economics, environmental policy and law, general, historical, human impacts}, url = {https://repository.library.noaa.gov/view/noaa/1668}, author = {Huppert, Daniel D. and Olson, Annette M. and Kate T and Marc J. Wing Hershman and Sweeney, Caitlin M.}, editor = {McMurray, Gregory R. and Robert J Bailey} } @article {36666, title = {The European Green Crab (Carcinus maenas) in Oregon: A Preliminary Survey of Yaquina, Coos, Winchester and Siletz Bays}, year = {1997}, note = {Accessed by opening a .zip file. {\textquotedblleft}During the summer and fall of 1997, the students and instructors of an Oregon State University Zoology class (Zoology 401/Research) searched for the presence of the European Green Crab (Carcinus maenas) in Coos, Winchester, Yaquina and Siletz Bays, Oregon and also took inventories of common intertidal species... We trapped one adult male green crab at Pony Point in Coos Bay on October 26, 1997. This crab measured 86.5 mm in carapace width and represents the largest specimen so far collected in Oregon. All the green crabs retrieved in Coos Bay have been large adults between 58 and 86 mm. We searched gravel substrates below boulders and algal blades, but never recovered any young-of the-year-green crabs in Coos, Winchester, Yaquina or Siletz Bays. These findings suggest that one year class (perhaps 1995) established itself in Coos Bay, but at present is not abundant enough to perpetuate itself.{\textquotedblright} (from the Abstract)}, institution = {Oregon State University}, address = {Corvallis, Or.}, keywords = {algae, aquatic invertebrates, Charleston (OR.), Coos Bay, Craigie Point, Criteser{\textquoteright}s Moorage, crustaceans, European green crab = Carcinus maenas, Fucus spp., Georgia-Pacific, Hatfield Marine Science Center, Hinton Point, Idaho Point, invasive species, molluscs, Oregon Oyster Farm, Oregon shore crab = Hemigrapsus oregonensis, Pony Point, Purple shore crab = Hemigrapsus nudus, River Bend, salinity, Sawyer{\textquoteright}s Landing, Schooner Creek, Siletz Bay, spatial distribution, species list, Umpqua River estuary, Umpqua River finger jetty, Umpqua triangle, Winchester Bay, Yaquina Bay south jetty}, url = {https://ir.library.oregonstate.edu/concern/defaults/xg94hv61v}, author = {Angel, Tiah and Bassett, Zasha and Chipman, Brian and Cleveland, Kimberly and Cronick, Tamisha and Ehlig, Janette and Frerich, Dan and Hunt, Chris and Ison, Todd and McGuire, Angela and Oliver, Jennifer and Schmelter, Anja and Whitsett, Jennifer} } @article {33216, title = {General guidelines for using the sediment quality triad}, journal = {Marine Pollution Bulletin}, volume = {34}, number = {6}, year = {1997}, month = {1997}, pages = {368-372}, keywords = {chemical, community ecology, methodology, sediments, toxicity, water pollution}, author = {Chapman, Peter M. and Anderson, Brian and Carr, Scott and Engles, Virginia and Green, Roger and Hameedi, Jawed and Harmon, Michelle and Haverland, Pamela and Hyland, Jeff and Ingersoll, Chris and Long, Edward and Rodgers, John Jr. and Salazar, Michael and Sibley, Paul K. and Smith, Paul J. and Swartz, Richard C. and Thompson, Bruce and Windom, Herbert} } @article {51376, title = {Guide to Oregon{\textquoteright}s Rocky Intertidal Habitats}, year = {1997}, note = {This is an updated version of {\textquotedblleft}Plants and animals of Oregon{\textquoteright}s rocky intertidal habitat.{\textquotedblright} Excellent color photographs and paintings to help you identify what you see on the rocky shore. Maps. A good introduction to Oregon tidepools. }, pages = {46 p.}, institution = {Oregon Dept. of Fish and Wildlife. Marine Resources Program,}, address = {Newport, Or.}, keywords = {aquatic invertebrates, aquatic vegetation, birds, bivalves, Bob Creek to Bray Point, Boiler Bay, brown algae, bryozoans, Cape Perpetua, crustaceans, fishes, gastropods, general ecosystem description, green algae, habitats, hydroids, identification, marine mammals, molluscs, Neptune State Park, Otter Rock, recreation, red algae, sea anemones, sea stars, Seal Rock, sponges, tunicates, worms, Yachats State Parks, Yaquina Head}, url = {https://www.researchgate.net/publication/283734404_Guide_to_Oregon\%27s_Rocky_Intertidal_Habitats}, author = {Mohler, June E. and Fox, David S. and Hastie, Bill (William O.) and Oregon. Dept. of Fish and Wildlife,} } @book {33291, title = {Molluscan fisheries in Oregon: past, present, and future}, series = {The history, present condition, and future of the molluscan fisheries of North and Central America and Europe: Volume 2, Pacific Coast and supplemental topics}, number = {no.128}, year = {1997}, note = {Good photographs and maps}, month = {December_1997}, pages = {p.75-87}, publisher = {U.S. Department of Commerce}, organization = {U.S. Department of Commerce}, keywords = {Alsea River estuary, aquaculture, aquatic invertebrates, bent-nose clam=Macoma nasuta, biological, bivalves, blue mussel=Mytilus edulis, butter clam=Saxidomus giganteus, California mussel=Mytilus californianus, cephalopods, commercial fisheries - shellfish, community ecology, Coos River estuary, eastern oyster=Crassostrea virginica, economics, edible oyster=Ostrea edulis, historical, introduced species, kitchen middens, molluscs, natural resource management, Netarts estuary, Nuttall cockle=Clinocardium nuttallii, Olympia oyster=Ostrea lurida (Ostrea conchaphila), Pacific littleneck=Leukoma staminea, Pacific oyster=Crassostrea gigas, Pacific razor=Siliqua patula, pulp mill effluent, recreational fisheries - shellfish, shellfish poisoning, softshell clam=Mya arenaria, Umpqua River estuary, water pollution, Yaquina Bay}, url = {https://spo.nmfs.noaa.gov/sites/default/files/tr128opt.pdf}, author = {Robinson, Anja M.}, editor = {MacKenzie, Clyde L. Jr. and Burrell, Victor G. Jr. and Rosenfield, Aaron and Hobart, WIllis L.} } @article {33236, title = {Status of coastal cutthroat trout in Oregon}, volume = {no.97-2}, year = {1997}, month = {April_1997}, pages = {27}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {Big Elk Creek, coastal cutthroat trout=Oncorhynchus clarki clarki, fishes, historical, life history information, Pacific salmonids=Oncorhynchus species, Yaquina River, Yaquina River Basin}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A18470}, author = {Hooton, Robert M. and Oregon. Dept. of Fish and Wildlife. Fish Division,} } @mastersthesis {33241, title = {Transmission of Disseminated Neoplasia in the Soft Shell Clam, Mya arenaria}, year = {1997}, note = {Major Professor was Paul W. Reno. }, month = {September_1997}, pages = {110 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Microbiology}, address = {Corvallis, Or.}, keywords = {Alsea River estuary, aquatic invertebrates, biological, bivalves, molluscs, physiology, shellfish disease, softshell clam=Mya arenaria, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/1g05fg145}, author = {House, Marcia} } @mastersthesis {32981, title = {Aspects of the Biology and Culture of Scyphomedusae of the Oregon Coast}, year = {1995}, note = {Major professor was Charles B. Miller. }, month = {1995}, pages = {47 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {College of Oceanography}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, biological, Chrysaora fuscescens, cnidarians, general ecosystem description, jellyfish, life history information, Oregon State University Hatfield Marine Science Center, physiology, population biology, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/3j3334717}, author = {Heitstuman, Thomas M.} } @article {32956, title = {Biogeography and dispersal of coastal marine organisms: experimental studies on a replica of a 16th-century sailing vessel}, journal = {Marine Biology}, volume = {121}, number = {4}, year = {1995}, month = {1995}, pages = {721-730}, keywords = {aquatic invertebrates, aquatic vegetation, biological, Columbia River estuary, Coos River estuary, geographical distribution, human impacts, introduced species, species list, Tillamook estuary, Yaquina Bay}, author = {Carlton, James T. and Hodder, J.} } @inbook {32991, title = {Investigation of damage at the Yaquina Bay north jetty}, booktitle = {Case Histories of the Design, Construction, and Maintenance of Rubble Mound Structures}, year = {1995}, note = {aerial photographs}, pages = {p.227-249}, publisher = {American Society of Civil Engineers}, organization = {American Society of Civil Engineers}, address = {New York, NY}, keywords = {coastal hazards, dredging, general, historical, hydrology, North Jetty, physical, physical modifications, South Jetty, Yaquina Bay, Yaquina Bay Bar, Yaquina Reef}, author = {Hughes, Steven A. and Peak, Robert C. and Carver, Robert D. and Francis, James D. and Bertrand, Gregg M.}, editor = {Magoon, Orville T. and Davidson, D. D. (eds.)} } @article {32996, title = {Monitoring of the Yaquina Bay entrance North jetty at Newport, Oregon: Summary and results}, volume = { no. 95-9}, year = {1995}, month = {July_1995}, institution = {U.S. Army Corps of Engineers Waterways Experiment Station}, address = {Vicksburg, MS}, keywords = {general, historical, human impacts, North Jetty, physical, physical modifications, wave height, Yaquina Bay}, url = {https://apps.dtic.mil/sti/pdfs/ADA299618.pdf}, author = {Hughes, Steven A. and Prickett, Terri L. and Tubman, Michael W. and Corson, William D. and U.S. Army. Corps of Engineers. Waterways Experiment Station ,} } @conference {32986, title = {Status of coastal cutthroat trout in Oregon}, booktitle = {Sea-Run Cutthroat Trout: Biology, Management, and Future Conservation}, year = {1995}, month = {1997}, pages = {p.57-67}, publisher = {Oregon Chapter of the American Fisheries Society}, organization = {Oregon Chapter of the American Fisheries Society}, address = {Reedsport, Or.}, keywords = {Big Elk Creek, biological, catch statistics, coastal cutthroat trout=Oncorhynchus clarki clarki, fishes, hatchery salmonids, historical, life history information, Pacific salmonids=Oncorhynchus species, population biology, population count, Yaquina River}, author = {Hooton, Robert M.}, editor = {Hall, James D. and Bisson, Peter A. and Gresswell, Robert E} } @article {32976, title = {Yaquina Bay oysters: yesterday, today, and tomorrow}, year = {1995}, note = {Insert - special publication}, month = {[1995]}, address = {Newport, OR}, keywords = {aquaculture, aquatic invertebrates, bivalves, general ecosystem description, historical, molluscs, recipes, Yaquina Bay}, author = {Hall, Bill} } @article {32891, title = {Healthy Native Stocks of Anadromous Salmonids in the Pacific Northwest and California}, year = {1994}, note = {Fold-out data maps}, month = {31 December 1994}, institution = {Oregon Trout}, address = {Portland, Or.}, keywords = {biological, geographical distribution, Pacific salmonids=Oncorhynchus species, population biology, Yaquina Bay, Yaquina River, Yaquina River Basin}, author = {Huntington, Charles W. and Nehlsen, Willa and Bowers, Jon and Oregon Trout,} } @book {32656, title = {Lincoln County Regional Strategies Proposal Round III: Salmon Enhancment Polyculture Operations}, year = {1992}, month = {May_1992}, publisher = {Regional Strategies Fund}, organization = {Regional Strategies Fund}, address = {Newport, Or.}, keywords = {aquaculture, biological, coho salmon=Oncorhynchus kisutch, economics, Oregon Aqua-Foods, Red abalone=Haliotis rufescens}, author = {Hobson, W. and Levin, John-Eric and Radtke, Hans and Severson, Richard} } @article {32651, title = {Report of the Kumamoto brood stock workshop. January 24, 1992. Oregon State University. Portland, Oregon}, volume = {no.92-002}, year = {1992}, note = {The Kumamoto oyster is closely related to the Pacific oyster, which was preferred by Japanese oyster growers. The Kumamoto oyster was virtually extinct in Japan, but could still be found on the U.S. West Coast. The purpose of the workshop was to develop advocacy and methods to preserve the Kumamoto oyster and its genetic diversity.}, month = {January, 1992}, pages = {15 p.}, institution = {Oregon Sea Grant}, address = {Corvallis, Or.}, keywords = {aquaculture, Coos River estuary, depleted populations, genetics, historical, kumamoto oyster=Crassostrea sikamea, Pacific oyster=Crassostrea gigas, physiology, reproductive behavior, taxonomy, Tillamook estuary, Yaquina Bay}, url = {https://repository.library.noaa.gov/view/noaa/34981}, author = {Hedgecock, Dennis and Robinson, Anja M.} } @book {32761, title = {White Sturgeon Management Framework Plan}, year = {1992}, month = {September_1992}, pages = {201 p.}, publisher = { Pacific States Marine Fisheries Commission}, organization = { Pacific States Marine Fisheries Commission}, address = {Portland, Or.}, keywords = {biological, commercial fisheries, geographical distribution, life history information, recreational fisheries, white sturgeon=Acipenser transmontanus, Yaquina River}, author = {White Sturgeon Planning Committee, and Hanson, David L. Hanson and Cochnauer, Tim G. and DeVore, John D. and Henry E. Jr Forner and Kisanuki, Tom T. and Kohlhorst, David W. and Lumley, Paul and McCabe, George, Jr. and Nigro,Anthony A. and Parker, Steve and Swartz, Don and VanVooren, Al} } @article {32471, title = {Abundance and distribution of harbor seals (Phoca vitulina) in Oregon, 1975-1983}, journal = {Northwestern Naturalist: A Journal of Vertebrate Biology}, volume = {71}, number = {3}, year = {1990}, note = {"The objectives of this study were to determine the location and use of haulout sites and to document any changes in abundance and distribution of harbor seals in Oregon from 1975 to 1983.}, month = {1990, Winter}, pages = {p.65-71}, keywords = {Alsea Bay, Cape Arago, Cascade Head, Coos Bay, Coquille Point, Harbor seal = Phoca vitulina, Netarts Bay, population count, Siletz Bay, Siltcoos outlet, Siuslaw River, Tillamook Bay, Umpqua River, Yaquina Bay}, author = {Harvey, James T. and Brown, Robin F. and Mate, Bruce R.} } @article {32351, title = {Chinook salmon populations in Oregon coastal river basins : description of life histories and assessment of recent trends in run strengths}, volume = {no.8402}, year = {1989}, note = {"This is a reprint of Oregon Department of Fish and Wildlife Information Reports 88-1, with the same title. The Addendum, pages vii-xx, was prepared for this edition." -- p.4 of cover. It was republished by the OSU Extension Service in its EM (Extension Memorandum) series. Nice life history data. Estimates catch, run strength, population size, run timing. Trend noted in addendum was for "Greater average abundance since 1977." (p.x)}, pages = {359 p.}, institution = {Oregon State University Extension Service}, address = {Corvallis, Or.}, keywords = {age composition, biological, chinook salmon=Oncorhynchus tshawytscha, commercial fisheries - salmon, fecundity, geographic distribution, hatcheries, juvenile fish, life history information, mathematical modeling, population count, recreational fisheries - salmon, size composition, temporal distribution, Yaquina Bay, Yaquina River, Yaquina River Basin}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A35565}, author = {Nicholas, Jay W. and Hankin, David G. and Oregon State University. Extension Service and Oregon. Fish Division and Oregon. Dept. of Fish and Wildlife. Research and Development Section,} } @article {32301, title = {Species profiles : life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): Olympia oyster}, volume = {no. 82-11.124}, year = {1989}, note = {This is a classic overview of the biology and life history of the Olympia oyster in the Pacific Northwest. Good bibliography, if a bit dated.Map, charts, line drawings.}, pages = {8 p.}, keywords = {Alsea Bay, bivalves, Chetco River estuary, commercial fisheries - shellfish, Coos Bay, Coquille Bay, fecundity, general, growth, life history information, molluscs, Nehalem Bay, Nestucca Bay, Netarts Bay, Olympia oyster = Ostrea conchaphila (Ostrea lurida), recreational fisheries - shellfish, reproductive behavior, Rogue River estuary, Sand Lake, Siletz Bay, Siuslaw Bay, taxonomy, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://archive.org/details/DTIC_ADA225231}, author = {Couch, David and Hassler, Thomas J. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and U.S.National Wetlands Research Center} } @article {32311, title = {Species profiles : life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest) : ghost shrimp and blue mud shrimp}, volume = {no. 82-11.93}, year = {1989}, note = {This is a classic overview of the biology and life history of ghost shrimp and mud shrimp in the Pacific Northwest, although the heavily parasitized mud shrimp may soon become extinct in Oregon estuaries. Good bibliography, if a bit dated. Map, charts, line drawings.}, pages = {14 p.}, keywords = {Alsea Bay, Chetco River estuary, Columbia River estuary, commercial fisheries - shellfish, Coos Bay, Coquille Bay, crustaceans, fecundity, general, Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), growth, life history information, Mud shrimp = Upogebia pugettensis, Nehalem Bay, Nestucca Bay, Netarts Bay, recreational fisheries - shellfish, reproductive behavior, Rogue River estuary, Salmon River Estuary, Sand Lake, Siletz Bay, Siuslaw Bay, taxonomy, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://archive.org/details/DTIC_ADA206132}, author = {Hornig, Susanna and Sterling, Anita and U.S.National Wetlands Research Center and Stanley D. (Stanley DeWitt) Smith and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and U.S.National Wetlands Research Center} } @article {32321, title = {Wave Information Studies of US Coastlines. Pacific coast hindcast phase III north wave information}, volume = {no.17}, year = {1989}, month = {March_1989}, pages = {600 p.}, institution = {U.S. Army Corps of Engineers. Coastal Engineering Research Center}, address = {Vicksburg, MS}, keywords = {physical, wave height data}, author = {Jensen, R. E. and Hubertz, J. M. and Payne, Jane B. and U.S. Army. Corps of Engineers. Coastal Engineering Research Center,} } @article {32221, title = {Chinook salmon population in Oregon coastal river basins : description of life histories and assessment of recent trends in run strengths}, volume = {no.88-1}, year = {1988}, note = {The digital file is in multiple parts.}, month = {January_1988}, pages = {359 p.}, institution = {Oregon Department of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {age composition, biological, chinook salmon=Oncorhynchus tshawytscha, commercial fisheries - salmon, fecundity, geographic distribution, hatcheries, juvenile fish, life history information, mathematical modeling, population count, recreational fisheries - salmon, size composition, temporal distribution, Yaquina Bay, Yaquina River, Yaquina River Basin}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A35565}, author = {Nicholas, J. W. and Hankin, D. G. and Oregon. Dept. of Fish and Wildlife. Fish Division,} } @book {32186, title = {Tragedy on Yaquina Bar}, year = {1988}, note = {Tells the story of an attempted rescue of imperiled boaters by the Coast Guard on Feb. 26, 1935.}, month = {1988}, pages = {13 p.}, publisher = {Lincoln County Historical Society}, organization = {Lincoln County Historical Society}, address = {Newport, Or.}, keywords = {biography, Coast Guard Station, general, historical, Yaquina Bay}, author = {Halsey, Eldred} } @book {32006, title = {The Oregon Estuary Plan Book}, year = {1987}, note = {includes Oregon estuary maps. A classic work.}, month = {1987}, pages = {126 p.}, publisher = {Oregon Department of Land Conservation and Development}, organization = {Oregon Department of Land Conservation and Development}, address = {Salem, Or.}, keywords = {ecological succession, environmental policy and law, estuaries, estuarine dynamics, map, sediments}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/wd375x07c}, author = {Cortright, Robert and Weber, Jeffrey and Bailey, Robert and Rohse, Mitch and Snow, Patricia and Hill, Starla and Oregon. Department of Land Conservation and Development,} } @article {77181, title = {Paleogeographic evolution of the United States Pacific Northwest during Paleogene time}, journal = {Canadian Journal of Earth Sciences}, volume = {24}, number = {8}, year = {1987}, note = {The period from 66-23.03 million years ago is known as the Paleogene. It is the time when mammals experienced rapid evolution. So did the Pacific Northwest. This article summarizes the recent evolution of the region, from plate collisions to vulcanism, from faulting to sedimentation.}, month = {08/1987}, pages = {p.1652-1667}, keywords = {general, geology, Pacific Northwest, paleosciences, Yachats Basalt}, author = {Heller, Paul L. and Tabor, Rowland W. and Suczek, Christopher A.} } @mastersthesis {32046, title = {Population Dynamics, Annual Food Consumption, Movements, and Dive Behaviors of Harbor Seals, Phoca vitulina richardsi, in Oregon}, year = {1987}, note = {Major professor was Bruce R. Mate. }, month = {November_1987}, pages = {175 p.}, school = {Oceanography, Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {School of Oceanography}, address = {Corvallis, Or.}, keywords = {abundance, biological, feeding behavior, geographical distribution, harbor seal=Phoca vitulina, marine mammals, physiology, population biology, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/0c483n00q}, author = {Harvey, James T.} } @mastersthesis {31876, title = {Differences in Pathogenicity and Pathology of Vibrio anguillarum and Vibrio ordalii in Chum Salmon (Oncorhynchus keta) and English Sole (Parophrys vetulus) under Laboratory Conditions}, year = {1986}, note = {Major professor was Dr. Robert E. Olson. }, month = {June_1986}, pages = {116 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Fisheries and Wildlife}, address = {Corvallis, Or.}, keywords = {bacteria, biological, chum salmon = Oncorhynchus keta, English sole = Pleuronectes vetulus, fish disease, fishes, Oregon State University Hatfield Marine Science Center, parasites, physiology, salmonid species = Oncorhynchus species, theses, vibrio anguillarum, vibrio ordalii, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/5q47rr18s}, author = {Handoyo, Nitimulyo Kamiso} } @article {31951, title = {Post-fledging parental care in the western gull}, journal = {Condor}, volume = {88}, number = {2}, year = {1986}, month = {May_1986}, pages = {p.194-199}, keywords = {biological, birds, developmental stages, western gull=Larus occidentalis, Yaquina Bay}, url = {https://sora.unm.edu/sites/default/files/journals/condor/v088n02/p0194-p0199.pdf}, author = {Spear, Larry B. and Ainley, David G. and Henderson, R. Phillip} } @article {31941, title = {Species profiles : life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): Dungeness crab}, volume = {no. 82-11.63}, year = {1986}, note = {This is a classic overview of the biology and life history of the Dungeness crab in the Pacific Northwest. Good bibliography, if a bit dated.Map, charts, line drawings.}, pages = {20 p.}, keywords = {Alsea Bay, Chetco River estuary, Columbia River estuary, commercial fisheries - shellfish, Coos Bay, Coquille Bay, crustaceans, Dungeness crab = Metacarcinus magister (Cancer magister), fecundity, general, growth, life history information, Nehalem Bay, Nestucca Bay, Netarts Bay, recreational fisheries - shellfish, reproductive behavior, Rogue River estuary, Salmon River Estuary, Sand Lake, Siletz Bay, Siuslaw Bay, taxonomy, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://apps.dtic.mil/sti/pdfs/ADA181590.pdf}, author = {Pauley, Gilbert B. and Armstrong, David A. and Heun, Thomas W. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and U.S.National Wetlands Research Center} } @book {31726, title = {The Effects of Stream Alterations on Salmon and Trout Habitat in Oregon}, year = {1985}, note = {Photocopy in ESA files, West Coast coho.}, month = {1985}, pages = {70 p.}, publisher = {Oregon Department of Fish and Wildlife}, organization = {Oregon Department of Fish and Wildlife}, address = {Portland, Or.}, keywords = {Alsea River, Butler Creek, Chinook salmon = Oncorhynchus tshawytscha, chum salmon = Oncorhynchus keta, Coho salmon = Oncorhynchus kisutch, Coos River, Coquille River, cutthroat trout = Oncorhynchus clarki, depleted populations, ecosystem health, erosion, habitats, human impacts, hydrology, Kilchis River, landslides, Little Nestucca River, logging, Lower Umpqua River, Miami River, Mill Creek, Millicoma River, mining, North Umpqua River, Railroad Creek, Rock Creek, salmonid species, Sand Lake, Scholfield Creek, Siletz River, Siuslaw River, Smith River, sockeye salmon = Oncorhynchus nerka, South Umpqua River, Steamboat Creek, steelhead trout = Oncorhynchus mykiss, Tillamook River, Tillamook River Basin, Tioga Creek, Trask River, Wilson River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/r494vk98q}, author = {Bottom, Daniel L. and Howell, P. J. and Rogers, J. D. and Oregon. Dept. of Fish and Wildlife,} } @article {31801, title = {Evaluation of seisometer wave gage and comparative analysis of wave data at Yaquina and Coquille Bays, Oregon}, volume = {no.85-12}, year = {1985}, institution = {U.S. Army Corps of Engineers. Waterways Experiment Station}, address = {Vicksburg, MS}, keywords = {Coquille River estuary, methodology, physical, wave data, wave height data, Yaquina Bay}, url = {https://apps.dtic.mil/dtic/tr/fulltext/u2/a162940.pdf}, author = {Thompson, Edward F. and Howell, Gary L. and Smith, Jane M. and U.S. Army. Corps of Engineers. Waterways Experiment Station ,} } @mastersthesis {31746, title = {Implications of Dietary Lipid and Carbohydrate Intake on the Liver and the Susceptibility of Hatchery-Reared Rainbow Trout (Salmo gairdneri) to Vibriosis}, year = {1985}, note = {Major professor was James Lannan. }, month = {1985}, pages = {54 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fisheries and Wildlife}, address = {Corvallis, Or.}, keywords = {biological, fish disease, hatchery salmonids, Oregon State University Hatfield Marine Science Center, rainbow trout=Oncorhynchus mykiss (Salmo gairdneri)}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/dj52w705m}, author = {Heres E., Allan A.} } @article {31751, title = {The signature of El Ni{\~n}o off Oregon, 1982-1983}, journal = {Journal of Geophysical Research}, volume = {90}, number = {C4}, year = {1985}, month = {July_1985}, pages = {p.7133-7142}, keywords = {climate, coastal upwelling, El Nino, hydrology, physical, salinity data, tidal data, water temperature data, wind, Yaquina Bay}, author = {Huyer, Adriana and Smith, Robert L.} } @article {31636, title = {Estuarine Mitigation: the Oregon Process}, year = {1984}, month = {April_1984}, pages = {60 p.}, institution = {Oregon Division of State Lands}, address = {Portland, Or.}, keywords = {Alsea River estuary, Chetco River estuary, Coos River estuary, Coquille River estuary, dredging, environmental policy and law, general, human impacts, Necanicum River estuary, Nehalem River estuary, Nestucca River estuary, Netarts estuary, physical modifications, Rogue River estuary, salinity data, Salmon River Estuary, Sand Lake Estuary, Siletz River estuary, Siltcoos estuary, Siuslaw River estuary, Tahkenitch estuary, Tenmile estuary, tidal data, Tillamook estuary, Umpqua River estuary, Yaquina Bay}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A14433/datastream/OBJ/download/Estuarine_mitigation.pdf}, author = {Hamilton, Stanley F. and Erickson, Joyce E. and Oregon. Division of State Lands,} } @article {31511, title = {Anomalous sea levels at Newport, Oregon , during the 1982-83 El Nino}, journal = {Coastal Oceanography and Climatology News}, volume = {5}, number = {4}, year = {1983}, month = {Summer_1983}, pages = {p.37-39}, keywords = {climate, coastal upwelling, El Nino, hydrology, physical, Yaquina Bay}, author = {Huyer, Adriana and Gilbert, William E. and Pittock, Henry L.} } @mastersthesis {31506, title = {Handling and Remote Setting Techniques for Pacific Oyster Larvae Crassostrea gigas}, year = {1983}, note = {Major professor was W.P. Breese. }, month = {1983}, pages = {37 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Department of Fisheries and Wildlife}, address = {Corvallis, Or.}, keywords = {aquaculture, biological, bivalves, life history information, molluscs, Oregon State University Hatfield Marine Science Center, Pacific oyster = Crassostrea gigas, theses}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/6682x613p}, author = {Henderson, Bruce A.} } @mastersthesis {31501, title = {Host Parasite Relationships between Gyrodactylus stellatus and the English Sole (Parophrys vetulus)}, year = {1983}, note = {"The results of these experiments suggest that both physical factors such as temperature and host density per unit area and the physiological state of the host play a role in the host-parasite relationship between P. vetulus and G. stellatus." (from the Abstract) Robert Olson was the major professor.}, pages = {65 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fisheries and Wilflife (Fisheries)}, address = {Corvallis, Or.}, keywords = {biological, English sole = Pleuronectes vetulus, fish disease, fishes, Oregon State University Hatfield Marine Science Center, parasites, physiology, population biology, speckled sanddab = Citharichthys stigmaeus, Starry flounder = Platichthys stellatus, theses, water temperature, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/44558g38t}, author = {Handoyo, Nitimulyo Kamiso} } @article {31546, title = {Oregon estuarine invertebrates : an illustrated guide to the common and important invertebrate animals}, volume = {no.83/16}, year = {1983}, note = {A classic. Excellent line drawings of animals. Section on what species might be confused with is quite useful. A bit old now, and many of the species names have changed, but still a useful resource.}, pages = {224 p.}, keywords = {cnidarians, crustaceans, molluscs, taxonomy}, url = {https://scholarsbank.uoregon.edu/xmlui/bitstream/handle/1794/1070/estuarine_invertebrates.pdf?sequence=3}, author = {Rudy, Paul Jr. and Rudy. Lynn Hay and Watson, Jay F.} } @article {31491, title = {"There she blows!"}, journal = {Oregon Wildlife}, volume = {38}, number = {5}, year = {1983}, note = {Gives history of whaling on the West Coast. Includes photograph of a 40-foot whale that washed ashore on Bay Beach in 1924. "It had been taken by whale hunters who anchored it temporarily at a mooring station near Agate Beach..." }, month = {1983, May}, pages = {p.10-12}, keywords = {Agate Beach, Gray whale = Eschrichtius robustus, historical, whaling, Yaquina Head}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/m039k5870}, author = {Fencsak, Richard and Hastie, Bill} } @inbook {49741, title = {Juvenile Pacific salmon in estuaries: the life support system}, booktitle = {Estuarine Comparisons : Proceedings of the Sixth Biennial International Estuarine Research Conference, Gleneden Beach, Oregon, November 1-6, 1981}, year = {1982}, note = {This classic work is focused on Nanaimo and Nitinat estuaries and preferred habitats for salmonids. Yaquina and Sixes estuaries are used as points of comparison. }, pages = {p.315-341}, publisher = {Academic Press}, organization = {Academic Press}, address = {New York,}, keywords = {Courtenay River estuary, Cowischan River estuary, feeding behavior, Fraser River estuary, habitats, juvenile fish, life history information, Nanaimo Bay, Nitinat River estuary, nutrition, Pacific salmonids=Oncorhynchus spp., Samass River estuary, Sixes River estuary, sparial distribution, Squamish River estuary, temporal distribution, Yaquina Bay}, author = {Healey, M. C.} } @article {31386, title = {Observations of sea level, wind and atmospheric pressure at Newport, Oregon, 1967-1980}, volume = {no.98}, year = {1982}, note = {National Science Foundation OCE-7925019. Publication is also part of the series Reference (Oregon State University. School of Oceanography): no. 82-12.}, month = {December_1982}, institution = {Oregon State University}, address = {Corvallis, Or.}, keywords = {climate, coastal upwelling, hydrology, Oregon State University Hatfield Marine Science Center, physical, South Jetty, statistical analysis, wind data, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/sq87bv73f}, author = {Pittock, Henry L. and Gilbert, William E. and Huyer, Adriana and Smith, Robert L.} } @article {24546, title = {Oregon shrimp fishery, 1981}, volume = {no. 82-1}, year = {1982}, note = {Extensive statistical tables.}, pages = {22 p.}, institution = {Oregon Dept. of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {aquatic invertebrates, biological, catch statistics, Chetco River estuary, Columbia River estuary, commercial fisheries - shellfish, Coos River estuary, Coquille River estuary, crustaceans, decapods, economics, general, pink shrimp = Pandalus jordani, Port of Garibaldi, Port of Newport, Port Orford, Rogue River estuary, Tillamook estuary, Umpqua River estuary, Winchester Bay, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/5m60qs66h}, author = {Saelens, Mark and Golden, Jim and Hunt, Betsy and Oregon. Department of Fish and Wildlife,} } @inbook {31361, title = {Temporal use of an Oregon estuary by hatchery and wild juvenile salmon}, booktitle = {Estuarine Comparison}, year = {1982}, month = {1982}, pages = {p.377-392}, publisher = {Academic Press}, organization = {Academic Press}, address = {New York}, keywords = {biological, fishes, hatchery salmonids, Pacific salmonids=Oncorhynchus species, temporal distribution, Yaquina Bay}, author = {Myers, Katherine W. and Horton, Howard F.}, editor = {Kennedy, Victo S. (ed.)} } @article {24496, title = {Oregon shrimp fishery, 1980}, volume = {no. 81-1}, year = {1981}, note = {Extensive statistical tables.}, pages = {17 p.}, institution = {Oregon Dept. of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {aquatic invertebrates, biological, catch statistics, Chetco River estuary, Columbia River estuary, commercial fisheries - shellfish, Coos River estuary, Coquille River estuary, crustaceans, decapods, economics, general, pink shrimp = Pandalus jordani, Port of Garibaldi, Port of Newport, Port Orford, Rogue River estuary, Tillamook estuary, Umpqua River estuary, Winchester Bay, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/w0892b89s}, author = {Saelens, Mark and Golden, Jim and Hunt, Betsy and Oregon. Department of Fish and Wildlife,} } @article {30896, title = {Growth and reproduction of subtidal and intertidal populations of the gaper clam Tresus capax (Gould) from Yaquina Bay, Oregon}, journal = {Proceedings - National Shellfisheries Association}, volume = {70}, number = {1}, year = {1980}, month = {June_1980}, pages = {p.1-13}, keywords = {biological, Coast Guard Station, developmental stages, fat gaper=Tresus capax, growth, life history information, McLean Point, Sally{\textquoteright}s Bend, Sawyer{\textquoteright}s Landing, Yaquina Bay}, author = {Breed-Willeke, G.M. and Hancock, D. R.} } @article {30791, title = {Observations on the ultrastructure of large cells associated with putative neoplastic disorders of mussels, Mytilus edulis, from Yaquina Bay, Oregon}, journal = {Journal of Invertebrate Pathology}, volume = {34}, number = {1}, year = {1979}, note = {Slide photographs}, month = {1979}, pages = {p.41-56}, keywords = {aquatic invertebrates, biological, bivalves, blue mussel=Mytilus edulis, molluscs, physiology, shellfish disease, Yaquina Bay}, author = {Mix, Michael C. and Hawkes, Joyce W. and Sparks, Albert K.} } @article {30741, title = {The starry flounder}, volume = {no.79-2}, year = {1979}, month = {September_1979}, pages = {5 p.}, institution = {Oregon Department of Fish and Wildlife}, keywords = {biological, commercial fisheries - groundfish, feeding behavior, growth, life history information, physiology, population biology, recreational fisheries - groundfish, reproductive behavior, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/3j333311k}, author = {Hettman, Gary and Oregon. Dept. of Fish and Wildlife,} } @article {30736, title = {Subtidal clam populations: Distribution, abundance, and ecology}, volume = {no.79-002}, year = {1979}, note = {Good maps}, month = {[1979]}, pages = {243 p.}, institution = {Oregon State University Sea Grant}, address = {Corvallis, Or.}, keywords = {abundance, Alsea Bay, aquatic vegetation, bivalves, butter clam=Saxidomus giganteus, commercial fisheries, Coos Bay, economics, fat gaper=Tresus capax, general ecosystem description, historical, Nehalem Bay, Nestucca Bay, Netarts Bay, Nuttall cockle=Clinocardium nuttallii, Pacific littleneck=Leukoma staminea, recreational fisheries, Salmon River estuary, sediments, Siletz Bay, Siuslaw Bay, softshell clam=Mya arenaria, spatial distribution, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://repository.library.noaa.gov/view/noaa/39128}, author = {Hancock, D. R. and Gaumer, Thomas F. and Willeke, G. B. and Robart, G. P. and Flynn, J.} } @book {30536, title = {Energy facilities in the Oregon coastal zone: Part I: the planning process}, year = {1978}, note = {Funded by NOAA, administered by OLCDC}, month = {September, 1978}, publisher = {[Oregon Land Conservation and Development Commission]}, organization = {[Oregon Land Conservation and Development Commission]}, keywords = {environmental policy and law, general, McLean Point, natural resource management, Yaquina Bay}, author = {Holt, Edward A. and Harlow, Michael G. and Oregon. Land Conservation and Development Commission, and Mathematical Sciences Northwest, inc. ,} } @book {30541, title = {Energy Facilities in the Oregon Coastal Zone: Part II: Likelihood of Energy Facility Siting}, year = {1978}, note = {Funded by NOAA, administered by LCDC}, month = {September, 1978}, publisher = {[Oregon Land Conservation and Development Commission]}, organization = {[Oregon Land Conservation and Development Commission]}, keywords = {coastal hazards, environmental policy and law, general, industrial development, land use, natural resource management, Yaquina Bay}, author = {Holt, Edward A. and Harlow, Michael G. and Oregon. Land Conservation and Development Commission, and Mathematical Sciences Northwest, inc. ,} } @book {30531, title = {Lords of Themselves: a History of Eastern Lincoln County, Oregon}, volume = {1}, year = {1978}, note = {Excellent photographs}, month = {1978}, pages = {292 p.}, publisher = {Delcon Historical Publications. Pioneer Printing}, organization = {Delcon Historical Publications. Pioneer Printing}, keywords = {Big Elk Creek, Elk City, general, Grant Creek, Harlan, historical, Nashville, Nortons, Summit, Toledo, Upper Yaquina River, Yaquina River}, author = {Hodges, M. Constance} } @article {30656, title = {Oregon and offshore oil}, volume = {no.78-004}, year = {1978}, month = {1978}, pages = {54 p.}, institution = {Oregon State University}, address = {Corvallis, Or.}, keywords = {aquaculture, aquatic invertebrates, bivalves, coastal hazards, commercial fisheries, crustaceans, decapods, environmental policy and law, fishes, general, hydrology, industrial development, marine mammals, molluscs, recreational fisheries, tourism, water pollution}, url = {https://repository.library.noaa.gov/view/noaa/39780}, author = {Stander, Jeffrey M. and Holton, Robert L. and Sea Grant College Program,} } @mastersthesis {80426, title = {Partial Purification and Characterization of Hemolysin from a Psychrotrophic Kanagawa Positive Marine Vibrio}, year = {1978}, note = {Hundreds of Americans suffer from food poisoning from shellfish every year. Dozens die. This 1978 Master{\textquoteright}s thesis investigates Vibrios from Yaquina Bay and is an example of the kind of pure research that has improved our understanding of these bacteria. {\textquotedblleft}The object of this research was to isolate Kanagawa positive pyschrotrophic vibrios from a marine environment and partially purify a hemolysin to determine its chemical and physical characteristics. These characteristics would then be compared to known properties of exotoxin from V. parahaemolyticus.{\textquotedblright} (p.2) The author isolated 235 Vibrio strains from molluscs in Yaquina Bay, 11\% of which were Kanagawa positive. The partially purified hemolysin was from a different species of Vibrio than Vibrio parahaemolyticus.}, pages = {73 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Microbiology}, address = {Corvallis, Or.}, keywords = {bacteria, Cockle clam = Clinocardium nuttallii, Pacific oyster = Crassostrea gigas, Softshell clam = Mya arenaria, theses, toxicity, Vibrio = Vibrio parahaemolyticus, Vibrios = Vibrio spp., Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/9880vv073}, author = {Huggins, Susan Peters} } @article {30546, title = {Progress report on the native broodstock collections on the Yaquina, Siuslaw, and Coos Rivers}, volume = {no.78-8}, year = {1978}, month = {Fall_1978}, pages = {27 p.}, keywords = {aquaculture, Big Elk Creek, biological, chinook salmon=Oncorhynchus tshawytscha, Coos River estuary, fishes, hatchery salmonids, hydrology, life history information, physiology, population biology, reproductive behavior, Siuslaw River estuary, Upper Yaquina River, wild salmonids, Yaquina River Basin}, url = {https://library.state.or.us/repository/2011/201108101605213/}, author = {Hooton, Robert M.}, editor = {Oregon Department of Fish and Wildlife,} } @book {30486, title = {Yaquina Bay 1778-1978}, year = {1978}, note = {Reprinted in 1979 by the Lincoln County Historical society.}, month = {[1978]}, pages = {77 p.}, publisher = {Oldtown Printers}, organization = {Oldtown Printers}, address = {Waldport, Or.}, keywords = {general, historical, Yaquina Bay, Yaquina River, Yaquina River Basin}, author = {Castle, Darlene and Eddleman, Brenda and Hughes, Meg and Hughes, Riley and Thompson, Paul} } @article {30371, title = {A bibliography of estuarine research in Oregon: a geographic review of research conducted in Oregon{\textquoteright}s estuaries, their drainage basins and the coastal beaches, dunes and headlands}, volume = {no.77-001}, year = {1977}, note = {Also called Oregon Estuarine Research Council Publication no.1}, month = {April_1977}, pages = {141 p.}, institution = {Oregon Estuarine Research Council}, keywords = {bibliography, Big Elk Creek, Boone Slough, coastal dunes, Depot Slough, Flesher Slough, general, King Slough, Little Elk Creek, McCaffery Slough, Mill Creek, Nute Slough, Olalla Slough, Pooles Slough, Yaquina Bay, Yaquina River, Yaquina River Basin}, author = {Morgan, John B. and Holton, Robert L.} } @article {30376, title = {A compendium of current research and management programs concerning Oregon{\textquoteright}s estuaries}, volume = {no.77-004}, year = {1977}, month = {December_1977}, pages = {97 p.}, institution = {[Oregon State University]}, address = {[Corvallis, OR]}, keywords = {aquaculture, aquatic invertebrates, environmental education, fish disease, fishes, general, human impacts, hydrology, industrial development, seafood processing, shellfish disease, water pollution, water quality}, author = {Morgan, John B. and Holton, Robert L. and Oregon. Estuarine Research Council,} } @article {30291, title = {Occurrence and survival of the larval nematode Anisakis sp. in the flesh of fresh, frozen, brined, and smoked pacific herring, Clupea harengus pallasi}, journal = {Journal of Parasitology}, volume = {63}, number = {3}, year = {1977}, month = {1977}, pages = {p.515-519}, keywords = {biological, nematodes, Pacific herring=Clupea pallasi, parasites, Yaquina Bay}, isbn = {0022-3395}, author = {Hauck, Arthur K.} } @article {30431, title = {Zooplankton and dredging: research perspectives from a critical overview}, journal = {Water Resources Bulletin}, volume = {13}, number = {3}, year = {1977}, note = {Examines effects of dredging on a foundation of the estuarine food chain, zooplankton. Compares Yaquina and Netarts Bays, noting that Yaquina Bay has a zooplankton bloom in the summer, while Netarts Bay does not. Most animals in Netarts Bay are flushed out daily with the tides. Notes that dredging would probably be less harmful in Netarts Bay. "In regions where plankton are continually renewed from ocean sources as in the Netarts Bay example there is little likelihood of harming an important part of the population [by dredging]." (p.462)}, pages = {p.461-468}, keywords = {dredging, ecosystem health, hydrology, plankton}, author = {Sullivan, Barbara K. and Hancock, Danil} } @mastersthesis {30071, title = {Infection, Histopathology and Migration of Anisakis sp. (Nematoda: Heterocheiloidea) in Pacific Herring (Clupea harengus pallasi) from Yaquina Bay, Oregon}, year = {1976}, note = {Major professor was Richard A. Tubb. }, month = {May_1976}, pages = {63 p.}, school = {Fisheries \& Wildlife, Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fisheries and Wildlife}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, biological, fishes, nematodes, Pacific herring = Clupea pallasi, parasites, physiology, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/sf2687201}, author = {Hauck, Arthur K.} } @article {30066, title = {Infection of the heart cockle, Clinocardium nuttallii, from Yaquina Bay, Oregon, with an endosymbiotic alga}, journal = {Journal of Invertebrate Pathology}, volume = {28}, number = {3}, year = {1976}, note = { Is it symbiosis or parasitism? "The thick layers surrounding the algal cells in situ, the dense colonies, and the in vitro reaction to host extract suggest the alga is parasitic. However, the presence of chloroplasts, the location of the algal cells only in illuminated tissue, the seemingly unhampered reproduction in situ, and the eventual adaptation to mineral medium suggest the alga is a facultative parasite." (from the Abstract)}, pages = {p.291-299}, keywords = {algae, aquatic invertebrates, bivalves, Cockle clam = Clinocardium nuttallii, mollusks, parasites, Symbiosis, Yaquina Bay}, author = {Hartman, M. C. and Pratt, I.} } @article {37451, title = {Methods of Supplementing Clam and Abalone Production: Annual Report July 1, 1975 to June 30, 1976}, year = {1976}, note = {This report presents information on clam distribution in Oregon estuaries. It includes clam population estimates for parts of Yaquina, Tillamook and Coos bays. Gives data from a clam aging study. Permits were issued for commercial clam harvesting in Yaquina and Coos bays. Reports on plantings of clams in Netarts and Yaquina Bays and the abalone planting in Whale Cove. Includes maps showing clams, substrate and vegetation for Nehalem, Tillamook, Netarts, Nestucca, Salmon River and Siletz bays.}, month = {1975-1976}, pages = {65 p.}, institution = {Oregon Fish Commission of Oregon, Division of Management and Research}, address = {Portland, Or.}, keywords = {abundance, age composition, aquaculture, aquatic invertebrates, biological, bivalves, commercial fisheries - shellfish, Coos Bay, fat gaper=Tresus capax, geographical distribution, methodology, molluscs, Nehalem River estuary, Nestucca River estuary, Netarts Bay, Siletz River estuary, size composition, Tillamook Bay, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/79407x89g}, author = {Gaumer, Thomas F. and Lukas, Gerald T. and Halstead, Bruce G. and Fish Commission of Oregon. Division of Management and Research, and Oregon. Department of Fish and Wildlife,} } @inbook {30141, title = {PCB and the activities budget of the crab Hemigrapsus oregonensis}, booktitle = {Estuarine Processes: Uses, Stresses, and Adaptations to the Estuary}, volume = {1}, year = {1976}, month = {1976}, pages = {p.290-301}, publisher = {Academic Press}, organization = {Academic Press}, keywords = {aquatic invertebrates, bioassay, biological, chemical, crustaceans, decapods, feeding behavior, physiology, polychlorinated biphenyls, reproductive behavior, water pollution, Yaquina Bay, yellow shore crab=Hemigrapsus oregonensis}, author = {Pearson, Walter H. and Holton, Robert L.}, editor = {Wiley, Martin (ed.)} } @article {36641, title = {Pleasure boating in Oregon : a report to the Oregon State Marine Board}, volume = {no.42}, year = {1976}, note = {This report summarizes the status of recreational boating in Oregon circa 1975. The Willamette and Columbia Rivers were the most heavily used waterways in the state. Most pleasure boats were used for recreational fishing, with waterskiing and cruising as other major activities. The size of pleasure boats was increasing. Problems included overcrowding at boating facilities, a lack of law enforcement, and a need for more public restrooms.}, pages = {73 p.}, institution = {Oregon State University. Water Resources Research Institute}, address = {Corvallis, Or.}, keywords = {Alsea River, Devils Lake, Diamond Lake, recreational fisheries, Siletz River, Siuslaw River, tourism, Umpqua River, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/defaults/76537521k}, author = {Pfister, Robert E. and Donheffner, Paul E. and Hartsook, Thomas Edward and Oregon. State Marine Board} } @article {29826, title = {Chlorinated pesticides and polychlorinated biphenyls in marine species, Oregon/Washington coast, 1972}, journal = {Pesticides Monitoring Journal}, volume = {9}, number = {1}, year = {1975}, month = {June_1975}, pages = {p.2-9}, keywords = {aquatic invertebrates, biological, bivalves, blue mussel=Mytilus edulis, chemical, Columbia River estuary, Coos River estuary, molluscs, Netarts estuary, Nuttall cockle=Clinocardium nuttallii, pesticides, physiology, polychlorinated biphenyls, softshell clam=Mya arenaria, Tillamook estuary, toxicity, Umpqua River estuary, Yaquina Bay}, author = {Claeys, Robert R. and Caldwell, Richard S. and Cutshall, Norman H. and Holton, Robert} } @article {29896, title = {Distribution, reproduction, and growth of Crangon nigricauda and Crangon franciscorum in Yaquina Bay, Oregon}, journal = {Northwest Science}, volume = {49}, number = {4}, year = {1975}, month = {1975}, pages = {p.216-240}, keywords = {abundance, aquatic invertebrates, blacktail bay shrimp=Crangon nigricauda, California bay shrimp=Crangon franciscorum, crustaceans, decapods, geographical distribution, growth, physiology, population biology, reproductive behavior, salinity data, sex ratio, size composition, temporal distribution, water temperature data, Yaquina Bay}, author = {Krygier, Earl E. and Horton, Howard F.} } @article {29591, title = {Geologic hazards inventory of the Oregon coastal zone}, volume = {no. 17}, year = {1974}, month = {1974}, pages = {94 p.}, institution = {[Oregon Department of Geology and Mineral Industries]}, address = {Portland, Or.}, keywords = {coastal hazards, environmental policy and law, erosion, general, hydrology, land use, physical, sediments}, doi = { }, url = {https://www.oregongeology.org/pubs/mp/MP-17.pdf}, author = {Beaulieu, John D. and Hughes, Paul W. and Mathiot, R. Kent and Oregon. Dept. of Geology and Mineral Industries,} } @article {29641, title = {History of the Lincoln County Tidelands}, year = {1974}, note = {(1998, Maggie Rivers, Port of Alsea Bay manager has incomplete copy, no year of publication given, 1973-1975?)}, month = {[1974]}, institution = {[Oregon Division of State Lands]}, address = {[Salem, Or.]}, keywords = {environmental policy and law, general, historical, land ownership}, author = {Harbert, Mark E. and Oregon. Division of State Lands,} } @article {29646, title = {Occurrence of intergrade brant in Oregon}, journal = {Western Birds}, volume = {5}, year = {1974}, month = {1974}, pages = {91-93}, keywords = {biological, birds, black brant=Branta bernicla nigricans, eelgrass=Zostera marina, new species description, taxonomy, Yaquina Bay}, url = {https://sora.unm.edu/sites/default/files/journals/wb/v05n03/p0091-p0093.pdf}, author = {Hoffman, Wayne and Elliott, William P.} } @mastersthesis {29431, title = {Life Cycle and Host Specificity of Diclidophora Sp. (Monogenea-Diclidophoridae), a Parasite of Embiotocid Fishes}, year = {1973}, note = {Major professor was Ivan Pratt. }, month = {July_1973}, pages = {103 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Zoology}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, biological, developmental stages, Diclidophora species, Embiotocidae = surf perches, fish disease, life history information, new species description, parasites, physiology, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/tb09j783q}, author = {Hanson, Alfred W.} } @article {29501, title = {Oregon Estuaries}, year = {1973}, note = {Excellent aerial photographs and maps}, month = {June_1973}, pages = {48 p.}, institution = {Oregon Division of State Lands}, address = {Salem, Or.}, keywords = {Alsea River estuary, Chetco River estuary, Columbia River estuary, Coos River estuary, Coquille River estuary, general ecosystem description, Necanicum River estuary, Nehalem River estuary, Nestucca River estuary, Netarts estuary, Rogue River estuary, Sally{\textquoteright}s Bend, Salmon River estuary, Sand Lake Estuary, Siletz River estuary, Siuslaw River estuary, Tillamook estuary, Umpqua River estuary, wetland delineation, wetland vegetation, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/defaults/kk91fr39t}, author = {Oregon. Division of State Lands, and Hamilton, Stanley F.} } @mastersthesis {29231, title = {A Green Algal Symbiont in Clinocardium nuttallii}, year = {1972}, note = {Major professor was Ivan Pratt. Doctoral dissertation..}, month = {1972}, pages = {65 p.}, school = {Oregon State University}, type = {Doctoral Dissertation}, edition = {Ph. D.}, chapter = {Dept. of Zoology}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, aquatic vegetation, biological, bivalves, green algae, molluscs, Nuttall cockle=Clinocardium nuttallii, parasites, physiology, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/k930c051w}, author = {Hartman, Michael C.} } @article {29281, title = {An Inventory of Filled Lands in Yaquina Bay and River}, year = {1972}, month = {June_1972}, pages = {31 p.}, institution = {Oregon Division of State Lands}, address = {[Salem, Or.]}, keywords = {diking, dredging, general, historical, human impacts, land ownership, land use, physical modifications, water rights, water use, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/defaults/w9505477b}, author = {Oregon. Advisory Committee to the State Land Board, and Hamilton, Stanley F.} } @proceedings {29356, title = {Multi-disciplinary study of water quality relationships: A case study of Yaquina Bay, Oregon}, volume = {no.348}, year = {1972}, note = {ill., maps ; 28 cm. Introduction -- The demand for sport fishing at Yaquina Bay -- The impact of sport angling on the Yaquina Bay economy -- Alternative waste disposal methods -- The predicted influence of kraft mill effluent on the fisheries resources -- An economic evaluation of alternative levels of water quality -- Institutional considerations -- Resource management decisions -- Appendix I. Index estimation of angler effort -- Appendix II. Consumer{\textquoteright}s surplus as a measure of direct benefits -- Appendix III. Field survey questionnaire on yield and expenditures.}, pages = {135 p.}, publisher = {Oregon State University Agricultural Experiment Station}, address = {Corvallis, Or.}, keywords = {bioassay, chemical, commercial fisheries, ecological values, economics, ecosystem modeling, environmental policy and law, general, general ecosystem description, Grassy Point, industrial development, land use, natural resource management, outfall, pulp mill effluent, recreational fisheries, sulphate, toxicity, urban development, waste disposal, water pollution, water quality, water rights, water use, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/1g05fg61j}, author = {Stoevener, Herbert H. and Stevens, Joseph B. and Horton, Howard F. and Sokoloski, Adam and Parrish, Loys P. and Castle, Emery N.} } @article {29276, title = {Supplementary Report to an Inventory of Filled Lands in Yaquina Bay}, year = {1972}, month = {August_1972}, pages = {20 p.}, institution = {Oregon Division of State Lands}, address = {[Salem, Or.]}, keywords = {diking, dredging, general, historical, human impacts, land ownership, land use, physical modifications, water rights, water use, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/defaults/hh63t155h}, author = {Oregon. Advisory Committee to the State Land Board, and Hamilton, Stanley F.} } @proceedings {29351, title = {Technical and economic issues in the water quality management in Yaquina Bay}, year = {1972}, month = {March_1972}, pages = {p.93-108}, publisher = {Oregon State University, Engineering Experiment Station}, address = {Corvallis, Or.}, keywords = {commercial fisheries, demographics, economics, environmental policy and law, estuarine dynamics, general, Grassy Point, hydrology, industrial development, natural resource management, outfall, pulp mill effluent, recreational fisheries, tourism, water pollution, water quality, Yaquina Bay, Yaquina River}, url = {https://repository.library.noaa.gov/view/noaa/34931}, author = {Stoevener, Herbert H. and Stevens, Joseph B. and Horton, Howard F.} } @article {29116, title = {Toxicity of kraft mill effluent to selected organisms from Yaquina Bay, Oregon}, journal = {Northwest Science}, volume = {45}, number = {4}, year = {1971}, month = {1971}, pages = {p.244-251}, keywords = {bioassay, biological, chemical, dungeness crab=Metacarcinus magister (Cancer magister), English sole=Pleuronectes vetulus, kelp greenling=Hexagrammos decagrammus, Oregon State University Hatfield Marine Science Center, pile perch=Rhacochilus vacca, pulp mill effluent, starry flounder=Platichthys stellatus, striped seaperch=Embiotoca lateralis, sulphate, toxicity, walleye surfperch=Hyperprosopon argenteum, water pollution, white seaperch=Phanerodon furcatus, Yaquina Bay}, author = {Parrish, Loys P. and Horton, Howard F.} } @mastersthesis {28916, title = {Metabolic Responses of the Burrowing Mud Shrimp, Callianassa californiensis, to Anoxic Conditions}, year = {1970}, note = {Major professor was Austin W. Pritchard. Masters thesis.}, month = {August_1970}, pages = {43 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Zoology}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, biological, crustaceans, decapods, dissolved oxygen, Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), physiology, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/z316q4839}, author = {Hawkins, Dan L.} } @mastersthesis {28911, title = {The Symbiotic Relationships and Morphology of Paravortex sp. nov. (Turbellaria, Rhabdocoelida), a Parasite of Macoma nasuta Conrad, 1837}, year = {1970}, note = {Major professor was Ivan Pratt. Masters thesis.}, month = {1970}, pages = {42 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Zoology}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, bent-nose clam = Macoma nasuta, biological, bivalves, molluscs, parasites, physiology, platyhelminthes, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/pc289n18p}, author = {Hanson, Alfred W.} } @article {28716, title = {Discussion of difference modeling of stream pollution by David A. Bella and William E. Dobbins}, journal = {Journal of Sanitary Engineering Division, American Society of Civil Engineers}, volume = {95}, year = {1969}, month = {October_1969}, pages = {p.968-972}, keywords = {hydrology, mathematical modeling, methodology, physical, water pollution}, author = {Holley, Edward R.} } @article {28766, title = {An Oregon record of the emperor goose}, journal = {The Murrelet}, volume = {50}, year = {1969}, month = {1969}, pages = {p.38}, keywords = {biological, birds, emporer goose=Philacte canagica, North Jetty, Yaquina Bay}, author = {Scott, J. Michael and Haislip, Thomas W. Jr.} } @mastersthesis {28451, title = {Population Characteristics of the Dusky Canada Goose as Determined from Banding Data}, year = {1967}, note = {Major professor was Howard M Wight. Masters thesis.}, month = {June_1967}, pages = {98 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fisheries and Wildlife, Wildlife Ecology}, address = {Corvallis, Or.}, keywords = {biological, birds, dusky Canada goose= Branta canadensis occidentalis, population biology, theses}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/9880vt67b}, author = {Henny, Charles J.} } @mastersthesis {28346, title = {Occurrence of Clostridium botulinum Type E in Shellfish, Lake Fish and Aquatic Sediments in the Northwest}, year = {1966}, note = {Major professor was Dr. K.S. Pilcher. Masters thesis}, month = {June_1966}, pages = {106 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Microbiology}, address = {Corvallis, Or.}, keywords = {biological, dungeness crab=Metacarcinus magister (Cancer magister), eastern oyster=Crassostrea virginica, seafood processing, shellfish poisoning, theses, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/pg15bh211}, author = {Sidney Joseph III Hayes} } @article {28231, title = {An ambicolored starry flounder from Yaquina Bay}, journal = {California Fish and Game}, volume = {51}, number = {2}, year = {1965}, month = {April_1965}, pages = {p.126-128}, keywords = {biological, fishes, life history information, new species description, physiology, Starry flounder = Platichthys stellatus, Yaquina Bay}, url = {https://www.biodiversitylibrary.org/item/61619$\#$page/3/mode/1up}, author = {Beardsley, Alan J. and Horton, Howard F.} } @article {28256, title = {Fish and Wildlife Resources of the Middle Coast Basin, Oregon, and Their Water Use Requirements}, year = {1965}, note = {"April, 1965." Assesses fish and wildlife resources (primarily fish) of the Mid-Coast Basin. Makes recommendations on minimum stream flows needed to sustain fish. Includes reports on the stream cleanup / log jam removal program of the mid-1960s. Includes list of dams and waterfalls. Two folded maps show known salmonid spawning areas.}, pages = {32 p.}, address = {Portland, Or.}, keywords = {abundance, Alsea River, birds, Chinook salmon = Oncorhynchus tshawytscha, chum salmon = Oncorhynchus keta, Coastal cutthroat trout = Oncorhynchus clarki clarki, Coho salmon = Oncorhynchus kisutch, commercial fisheries, ecological values, economics, fishes, geographical distribution, historical, human impacts, hydrology, life history information, Pacific salmonids=Oncorhynchus species, physical modifications, recreational fisheries, reproductive behavior, Salmon River, Siletz River, Siltcoos Lake, Siuslaw River, steelhead trout = Oncorhynchus mykiss, Tahkenitch Lake, temporal distribution, terrestrial mammals, Yachats River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/defaults/s7526d23w}, author = {Hutchinson, James M.} } @article {28121, title = {Alternatives for Disposal of Kraft Mill Wastes in Yaquina Estuary, Oregon}, year = {1963}, note = {"The purpose of this report is to evaluate alternate engineering plans for the disposal of wastes from a kraft process pulp and paper mill located at Toledo, Oregon. These alternatives have been evaluated from the standpoint of estimated annual cost and estimated resulting pollution of Yaquina Estuary in order to provide data for co-investigators on research grant R6-9515 "An Economic Evaluation of Water Pollution Control." (p.1)}, month = {September_1963}, pages = {28 p.}, address = {Corvallis, Or.}, keywords = {chemical, computer programs, dissolved oxygen, Grassy Point, McLean Point, outfall, physical, pulp mill effluent, Toledo, waste disposal, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/1544bp64r}, author = {Harris, Dennis R.} } @article {28126, title = {History of the Oregon trawl fishery, 1884-1961}, journal = {Research Briefs. Fish Commission of Oregon}, volume = {9}, number = {1}, year = {1963}, month = {May_1963}, pages = {p.5-26}, keywords = {commercial fisheries, economics, general, historical, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/hd76s074n}, author = {George Y. Jr. Harry and Morgan, Alfred R.} } @article {28131, title = {Recreational and Commercial Use Pattern for the Fish and Wildlife Resources of Yaquina Bay, Oregon}, year = {1963}, note = {Describes natural resource use in the Yaquina Bay area about 1963. Bay Crab, clam, oyster, salmon, cutthroat trout and bottomfish fisheries are discussed. Touches on jetty fishing, skin and scuba diving, offshore salmon fisheries, underutilized fisheries and waterfowl hunting.}, pages = {15 p.}, institution = {[Department of Fish and Game Management, Oregon State University]}, address = {[Corvallis, Or.]}, keywords = {birds, Butter clam = Saxidomus giganteus, cabezon = Scorpaenichthys marmoratus, Chinook salmon = Oncorhynchus tshawytscha, Coastal cutthroat trout = Oncorhynchus clarki clarki, Coho salmon = Oncorhynchus kisutch, commercial fisheries - salmon, Dungeness crab = Metacarcinus magister (Cancer magister), Gaper clam = Tresus nuttallii, Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), Green sturgeon = Acipenser medirostris, jacksmelt = Atherinopsis californiensisbiological, kelp greenling = Hexagrammos decagrammus, Kumamoto oyster = Crassostrea sikamea, Littleneck clam = Leukoma staminea, Nuttall cockle = Clinocardium nuttallii, recreational fisheries, recreational fisheries - grounfish, recreational fisheries - shellfish, Red rock crab = Cancer productus, salmon, shellfish, Softshell clam = Mya arenaria, Starry flounder = Platichthys stellatus, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/qj72p772z}, author = {Long, J. B. and Horton, Howard F.} } @article {28096, title = {Lincoln District}, journal = {Oregon State Game Commission, Fishery Division. Annual Report - Fishery Division}, year = {1962}, note = {Numerous statistics, from creel censuses to catch-and-effort statistics. "Salmon fishing in streams of the district was good to excellent. A large run of silver salmon which entered the rivers during a freshet in early October permitted anglers an oppertunity to take bright fish in popular upstream fishing areas." (p.304)}, pages = {p.301-316}, keywords = {Alsea River, Big Elk Creek, catch statistics, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, cutthroat trout = Oncorhynchus clarki, Depoe Bay, Devils Lake, Drift Creek, Five Rivers, hatcheries, introduced species, Lobster Creek, North Fork Alsea River, population count, recreational fisheries, Salmon River, salmonid species, Schooner Creek, Siletz River, South Fork Alsea River, steelhead trout = Oncorhynchus mykiss, Yachats River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/pn89dc32p}, author = {Rousseau, Rollie F. and Herrig, Richard G.} } @article {28036, title = {Final Report. Some Recent Physical Changes of the Oregon Coast}, year = {1961}, month = {15 November_1961}, pages = {151 p.}, institution = {Department of Geography, University of Oregon}, address = {Eugene, Or.}, keywords = {coastal dunes, diking, erosion, human impacts, North Jetty, physical, physical modifications, sediments, South Jetty, terrestrial vegetation, Yaquina Bay, Yaquina Head}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/3n204436h}, author = {Dicken, Samuel N. and Hanneson, Bill and Johannessen, Carl L.} } @article {28041, title = {Lincoln District}, journal = {Oregon State Game Commission, Fishery Division. Annual Report - Fishery Division}, year = {1961}, note = {Numerous tables with catch statistics, creel censuses and catch-and-effort statistics. Includes table of pollution and stream barriers (logjams). Includes amusing account of attempts to study the diets of harbor seals in Alsea Bay (p.270-271)}, pages = {p.258-272}, keywords = {Alsea River, Big Elk Creek, catch statistics, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, cutthroat trout = Oncorhynchus clarki, Depoe Bay, Devils Lake, Drift Creek, Five Rivers, Harbor seal = Phoca vitulina, hatcheries, introduced species, Lobster Creek, North Fork Alsea River, population count, recreational fisheries, Salmon River, salmonid species, Schooner Creek, Siletz River, South Fork Alsea River, steelhead trout = Oncorhynchus mykiss, Yachats River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/fq978015s}, author = {Herrig, Richard G.} } @article {28026, title = {Lincoln District}, journal = {Oregon State Game Commission, Fishery Division. Annual Report - Fishery Division}, year = {1960}, note = {Reporting on the Salmon River was moved from the Tillamook District to the Lincoln District. Numerous tables with catch statistics, creel censuses and catch-and-effort statistics. Includes table of pollution and stream barriers (logjams). Extensive coverage of Devils Lake and the D River in this report.}, pages = {p.263-277}, keywords = {Alsea River, catch statistics, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, cutthroat trout = Oncorhynchus clarki, D River, Devils Lake, hatcheries, introduced species, North Fork Alsea River, population count, recreational fisheries, Salmon River, salmonid species, Siletz River, steelhead trout = Oncorhynchus mykiss, Yachats River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/z890rz974}, author = {Herrig, Richard G.} } @article {28001, title = {Lincoln District}, journal = {Oregon State Game Commission, Fishery Division. Annual Report - Fishery Division}, year = {1959}, note = {This chapter contains numerous statistics, from creel censuses, to spawning censuses, to catch-and-effort statistics. Siuslaw River is included in the Lincoln District 1959 and earlier. With 1960, the Siuslaw River Area got its own chapter. In 1959 and earlier, Salmon River data is in the Tillamook District; after 1959, the Salmon River is in the Lincoln District. }, pages = {p.243-254}, keywords = {Alsea River, Big Elk Creek, catch statistics, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, commercial fisheries, cutthroat trout = Oncorhynchus clarki, Depoe Bay, Devils Lake, Drift Creek, Five Rivers, hatcheries, introduced species, Lobster Creek, North Fork Alsea River, population count, recreational fisheries, salmonid species, Schooner Creek, Siletz River, Siuslaw River, South Fork Alsea River, steelhead trout = Oncorhynchus mykiss, Yachats River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/0r967823f}, author = {Herrig, Richard} } @article {28006, title = {Occurence of juvenile pink salmon in a coastal stream south of the Columbia River}, journal = {Research Briefs. Fish Commission of Oregon}, volume = {7}, number = {1}, year = {1959}, month = {July_1959}, pages = {p.81}, keywords = {biological, developmental stages, fishes, Pacific salmonids=Oncorhynchus species, pink salmon=Oncorhynchus gorbuscha, reproductive behavior, straying, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/p2676w188}, author = {Herrmann, Robert B.} } @article {27926, title = {Coastal Harbors of Oregon and Washington}, year = {1957}, note = {Maps, "navigational" charts}, month = {[1957]}, pages = {44 p.}, address = {[Seattle, Wa.]}, keywords = {Alsea River estuary, Chetco River estuary, Columbia River estuary, Coos River estuary, Coquille River estuary, Depoe Bay, general, Nehalem River estuary, Nestucca River estuary, Netarts estuary, Port Orford, recreational fisheries, Rogue River estuary, Siletz River estuary, Siuslaw River estuary, Tillamook estuary, tourism, Umpqua River estuary, Yaquina Bay, Yaquina Head, Yaquina River}, author = {Morris, Frank and Heath, W. R.} } @mastersthesis {27791, title = {Stratigraphy of the Miocene Agate Beach Formation in Lincoln County, Oregon}, year = {1953}, note = {Major professor was Harold A Boyd Jr. Masters thesis.}, month = {June_1953}, pages = {73 p.}, school = {Oregon State College}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Geology}, address = {Corvallis, Or.}, keywords = {Agate Beach, aquatic invertebrates, Depoe Bay, foraminifera, fossils, geological, Jump-Off Joe, Nye Beach, Otter Rock, paleosciences, Schooner Creek, theses, Yaquina Head}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/pc289p42z}, author = {Herron, John E.} } @article {27756, title = {The effect of kraft mill waste components on certain salmonid fishes of the Pacific Northwest}, journal = {Tappi}, volume = {35}, number = {12}, year = {1952}, month = {December_1952}, pages = {p.545-549}, keywords = {bioassay, biological, chemical, chinook salmon=Oncorhynchus tshawytscha, coastal cutthroat trout=Oncorhynchus clarki clarki, coho salmon=Oncorhynchus kisutch, fishes, Pacific salmonids=Oncorhynchus species, physiology, pulp mill effluent, toxicity, water pollution}, author = {Haydu, Eugene P. and Amberg, H. R. and Dimick, Roland E.} } @article {77126, title = {Shellfish Investigation Progress Report}, volume = {no.26}, year = {1952}, note = {This investigation focuses on growth and survival of Pacific razor clams, measuring clams from multiple sites. It tracks the length frequencies of clams recorded, as well as length-live weight relationships. This report also includes data on number of crab pots being fished between the Columbia and Siuslaw Rivers in April, 1952. 110 cases of Japanese oyster seed were imported into Coos Bay in March, 1952, and trucked to Alsea Bay for planting. Japanese oyster seed was a source for introduced species in Oregon. Table 11 (p.23) gives a rough list of species from Japan found among the oyster spat in Alsea Bay from the March, 1952 shipment.}, month = {1952, Jan.-May}, pages = {27 p.}, keywords = {abundance, Alsea Bay, aquaculture, bivalves, clams, commercial fisheries {\textendash} shellfish, Coos Bay, crustaceans, Dungeness crab = Metacarcinus magister (Cancer magister), geographic distribution, molluscs, natural resource management, oysters, Pacific oyster = Crassostrea gigas, Pacific razor clam = Siliqua patula, recreational fisheries {\textendash} shellfish, Sea lettuce = Ulva spp. (Enteromorpha spp.), Tillamook Bay, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/v979v371b}, author = {Marriage, Lowell D. and Waldron, Kenneth D. and Hirschhorn, George and Oregon. Fish Commission,} } @mastersthesis {27761, title = {Stratigraphy and Foraminifera of the Upper Part of the Nye Formation, Yaquina Bay, Oregon}, year = {1952}, note = {Major professor was Harold A. Boyd Jr. Masters thesis.}, month = {June_1952}, pages = {47 p.}, school = {Oregon State College}, edition = {M.S.}, chapter = {Dept. of Geology}, address = {Corvallis, Or.}, keywords = {aquatic invertebrates, foraminifera, geological, paleosciences, theses, Yaquina Bay, Yaquina River Basin}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/pz50gz46z}, author = {Heacock, Robert L.} } @article {27711, title = {A study of the bait seine fisheries of Oregon}, journal = {Research Briefs. Fish Commission of Oregon}, volume = {3}, number = {2}, year = {1951}, month = {August_1951}, pages = {p.3-7}, keywords = {catch statistics, commercial fisheries, general, recreational fisheries, species composition, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/vt150j866}, author = {George Y. Jr. Harry} } @article {27681, title = {The salmon catch of the sport fishery in the coastal rivers of Oregon in 1949}, journal = {Research Briefs. Fish Commission of Oregon}, volume = {3}, number = {1}, year = {1950}, month = {September_1950}, pages = {p.33-38}, keywords = {Alsea River estuary, biological, catch statistics, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, Coquille River estuary, general, natural resource management, Nehalem River estuary, Nestucca River estuary, Pacific salmonids=Oncorhynchus species, recreational fisheries - salmon, Siuslaw River estuary, statistical analysis, Tillamook estuary, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/1544bp92x}, author = {Henry, Kenneth A. and Morgan, Alfred R. and Rulifson, Robert L.} } @article {27676, title = {Salmon fisheries of the coastal rivers of Oregon south of the Columbia}, volume = {no.13}, year = {1950}, note = {Excellent photographs of splash dams. Hand drawn maps. December, 1950.}, pages = {31 p.}, institution = {Oregon Fish Commission}, address = {Portland, Or.}, keywords = {Alsea River estuary, biological, catch statistics, chinook salmon=Oncorhynchus tshawytscha, chum salmon=Oncorhynchus keta, coastal cutthroat trout= Oncorhynchus clarki clarki, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, Coquille River estuary, fishes, general, hatchery salmonids, human impacts, land use, life history information, natural resource management, Nehalem River estuary, Nestucca River estuary, Pacific salmonids=Oncorhynchus species, physical modifications, recreational fisheries - salmon, Siuslaw River estuary, steelhead=Oncorhynchus mykiss, Tillamook estuary, Umpqua River estuary, water use, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/defaults/1z40kz755}, author = {Gharrett, John T and Hodges, John I. and Oregon. Fish Commission} } @article {27686, title = {Some factors influencing the trends of salmon populations in Oregon}, volume = {no.12}, year = {1950}, note = {December_1950. Three factors were found to be significantly correlated with the fluctuations and trends in silver salmon production in Oregon. Logging was found to adversely affect the runs of salmon in later years. Exceptional winter floods seem to produce poor resulting runs. Low summer water flows also appear to produce lower than average runs on some rivers, while higher summer flows appear to be followed by an increase in the resultant runs. The intensity of fishing was also found to affect the subsequent productivity of the fisheries. Increases in fishing effort on the rivers studied were followed in succeeding cycles by a lower catch, and when the fishing effort declined the ensuing production of silver salmon generally increased. Other factors studied did not bear a significant relationship to the fluctuations or trends of productivity of silver salmon.}, pages = {449 p.}, institution = {Oregon Fish Commission}, address = {Portland, Or.}, keywords = {Alsea River estuary, biological, catch statistics, coho salmon=Oncorhynchus kisutch, commercial fisheries - salmon, Coquille River estuary, depleted populations, economics, environmental policy and law, fishes, general, hatchery salmonids, human impacts, hydrology, industrial development, land use, Pacific salmonids=Oncorhynchus species, physical modifications, population biology, recreational fisheries - salmon, Siletz River estuary, water pollution, water use, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/defaults/rf55zd889}, author = {McKernan, Donald L. and Johnson, Donald R. and Hodges, John I. and Oregon. Fish Commission} } @mastersthesis {27641, title = {The Effects of Kraft Mill Waste Effluents on King and Silver Salmon}, year = {1949}, note = {Major professor was Roland E. Dimick. Masters thesis. Good photographs.}, month = {June_1949}, pages = {71 p.}, school = {Oregon State College}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fish and Game Management}, address = {Corvallis, Or.}, keywords = {bioassay, biological, chemical, chinook salmon=Oncorhynchus tshawytscha, coho salmon=Oncorhynchus kisutch, fishes, Pacific salmonids=Oncorhynchus species, physiology, pulp mill effluent, theses, toxicity, water pollution}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/fj2364397}, author = {Haydu, Eugene P.} } @article {37496, title = {Statistical Bulletin: Take or Catch of Commercial Food Fish, Columbia River and Major Coastal Streams, 1928-1943}, year = {1944}, note = {Gives statistics of landings from 1928-1943.}, pages = {48 p.}, institution = {Fish Commission of Oregon}, address = {Portland, Or.}, keywords = {Alsea River, Chinook almon = Oncorhynchus tshawytscha, chum salmon = Oncorhynchus keta, Coho salmon = Oncorhynchus kisutch, Columbia River, commercial fisheries, Coos Bay, Coquille River, Green sturgeon = Acipenser medirostris, Nehalem River, recreational fisheries, Shad = Alosa sapidissima, Siletz Bay, Siuslaw River, statistics, Striped Bass = Morone saxatilis, Tillamook Bay, Umpqua River, White sturgeon = Acipenser transmontanus, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/02870w51s}, author = {Hoy, M. T. and Oregon. Fish Commission} } @article {27556, title = {A pollen study of a fossil peat deposit on the Oregon coast}, journal = {Northwest Science}, volume = {16}, number = {4}, year = {1942}, month = {1942}, pages = {p.86-92}, keywords = {coastal dunes, community ecology, ecological succession, geological, Nye Beach, paleosciences, terrestrial vegetation}, author = {Hansen, Henry P. and Allison, Ira S.} } @article {77076, title = {History of the salmon industry in Oregon}, journal = {The Commonwealth Review: a Journal of Applied Social Science}, volume = {14}, year = {1932}, note = {This article summarizes the author{\textquoteright}s work in her 1930 M.A. thesis (University of Oregon). It gives a brief history of the salmon industry. Statistics cover the fish pack from 1866-1927. Worth reading to see what the issues looked like to someone at that time.}, pages = {p.84-107}, keywords = {canneries, commercial fisheries {\textendash} salmon, depleted populations, economics, environmental law and policy, general, hatcheries, historical, Pacific salmon = Oncorhynchus spp., statistics}, author = {Hayden, Mildred Vera} } @mastersthesis {83270, title = {History of the Salmon Industry in Oregon}, volume = {M.A.}, year = {1930}, note = {History of the salmon industry. Statistics cover the fish pack from 1866-1927. Worth reading to see what the issues looked like to someone at that time.}, pages = {54 p.}, school = {University of Oregon }, address = {Eugene, Or.}, keywords = {canneries, commercial fisheries {\textendash} salmon, depleted populations, economics, environmental law and policy, general, hatcheries, historical, Pacific salmon = Oncorhynchus spp., statistics, theses}, author = {Hayden, Mildred Vera} }